Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS07105

Experiment: LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDZA65_RS07100 and DZA65_RS07105 are separated by 224 nucleotidesDZA65_RS07105 and DZA65_RS07110 are separated by 93 nucleotides DZA65_RS07100: DZA65_RS07100 - undecaprenyl-phosphate galactose phosphotransferase WbaP, at 1,474,187 to 1,475,602 _RS07100 DZA65_RS07105: DZA65_RS07105 - glycosyltransferase family 2 protein, at 1,475,827 to 1,476,738 _RS07105 DZA65_RS07110: DZA65_RS07110 - dTDP-glucose 4,6-dehydratase, at 1,476,832 to 1,477,896 _RS07110 Position (kb) 1475 1476 1477Strain fitness (log2 ratio) -2 -1 0 1 2at 1474.862 kb on - strand, within DZA65_RS07100at 1474.862 kb on - strand, within DZA65_RS07100at 1474.862 kb on - strand, within DZA65_RS07100at 1474.919 kb on + strand, within DZA65_RS07100at 1474.919 kb on + strand, within DZA65_RS07100at 1474.920 kb on - strand, within DZA65_RS07100at 1474.930 kb on + strand, within DZA65_RS07100at 1474.931 kb on - strand, within DZA65_RS07100at 1474.931 kb on - strand, within DZA65_RS07100at 1474.940 kb on - strand, within DZA65_RS07100at 1475.023 kb on + strand, within DZA65_RS07100at 1475.044 kb on + strand, within DZA65_RS07100at 1475.044 kb on + strand, within DZA65_RS07100at 1475.045 kb on - strand, within DZA65_RS07100at 1475.045 kb on - strand, within DZA65_RS07100at 1475.048 kb on - strand, within DZA65_RS07100at 1475.072 kb on + strand, within DZA65_RS07100at 1475.072 kb on + strand, within DZA65_RS07100at 1475.072 kb on + strand, within DZA65_RS07100at 1475.072 kb on + strand, within DZA65_RS07100at 1475.072 kb on + strand, within DZA65_RS07100at 1475.072 kb on + strand, within DZA65_RS07100at 1475.072 kb on + strand, within DZA65_RS07100at 1475.073 kb on - strand, within DZA65_RS07100at 1475.073 kb on - strand, within DZA65_RS07100at 1475.073 kb on - strand, within DZA65_RS07100at 1475.073 kb on - strand, within DZA65_RS07100at 1475.074 kb on + strand, within DZA65_RS07100at 1475.075 kb on - strand, within DZA65_RS07100at 1475.075 kb on - strand, within DZA65_RS07100at 1475.114 kb on + strand, within DZA65_RS07100at 1475.114 kb on + strand, within DZA65_RS07100at 1475.114 kb on + strand, within DZA65_RS07100at 1475.115 kb on - strand, within DZA65_RS07100at 1475.152 kb on + strand, within DZA65_RS07100at 1475.152 kb on + strand, within DZA65_RS07100at 1475.173 kb on + strand, within DZA65_RS07100at 1475.173 kb on + strand, within DZA65_RS07100at 1475.174 kb on - strand, within DZA65_RS07100at 1475.174 kb on - strand, within DZA65_RS07100at 1475.254 kb on + strandat 1475.254 kb on + strand, within DZA65_RS07100at 1475.279 kb on - strand, within DZA65_RS07100at 1475.323 kb on - strand, within DZA65_RS07100at 1475.335 kb on + strand, within DZA65_RS07100at 1475.335 kb on + strand, within DZA65_RS07100at 1475.336 kb on - strand, within DZA65_RS07100at 1475.336 kb on - strand, within DZA65_RS07100at 1475.420 kb on + strand, within DZA65_RS07100at 1475.421 kb on - strand, within DZA65_RS07100at 1475.423 kb on + strand, within DZA65_RS07100at 1475.423 kb on + strand, within DZA65_RS07100at 1475.423 kb on + strand, within DZA65_RS07100at 1475.423 kb on + strand, within DZA65_RS07100at 1475.424 kb on - strand, within DZA65_RS07100at 1475.424 kb on - strand, within DZA65_RS07100at 1475.434 kb on + strandat 1475.481 kb on + strandat 1475.482 kb on - strandat 1475.502 kb on - strandat 1475.516 kb on + strandat 1475.517 kb on - strandat 1475.561 kb on - strandat 1475.601 kb on - strandat 1475.601 kb on - strandat 1475.625 kb on + strandat 1475.822 kb on + strandat 1475.823 kb on - strandat 1475.854 kb on + strandat 1475.925 kb on - strand, within DZA65_RS07105at 1476.007 kb on + strand, within DZA65_RS07105at 1476.007 kb on + strand, within DZA65_RS07105at 1476.033 kb on + strand, within DZA65_RS07105at 1476.055 kb on - strand, within DZA65_RS07105at 1476.055 kb on - strand, within DZA65_RS07105at 1476.061 kb on - strand, within DZA65_RS07105at 1476.064 kb on + strand, within DZA65_RS07105at 1476.064 kb on + strand, within DZA65_RS07105at 1476.064 kb on + strand, within DZA65_RS07105at 1476.065 kb on - strand, within DZA65_RS07105at 1476.065 kb on - strand, within DZA65_RS07105at 1476.077 kb on + strand, within DZA65_RS07105at 1476.077 kb on + strand, within DZA65_RS07105at 1476.163 kb on + strand, within DZA65_RS07105at 1476.192 kb on + strand, within DZA65_RS07105at 1476.193 kb on - strand, within DZA65_RS07105at 1476.193 kb on - strand, within DZA65_RS07105at 1476.198 kb on + strand, within DZA65_RS07105at 1476.199 kb on - strand, within DZA65_RS07105at 1476.217 kb on + strand, within DZA65_RS07105at 1476.222 kb on + strand, within DZA65_RS07105at 1476.223 kb on - strand, within DZA65_RS07105at 1476.223 kb on - strand, within DZA65_RS07105at 1476.252 kb on + strand, within DZA65_RS07105at 1476.253 kb on - strand, within DZA65_RS07105at 1476.254 kb on + strand, within DZA65_RS07105at 1476.254 kb on + strand, within DZA65_RS07105at 1476.254 kb on + strand, within DZA65_RS07105at 1476.255 kb on - strand, within DZA65_RS07105at 1476.277 kb on - strand, within DZA65_RS07105at 1476.279 kb on + strand, within DZA65_RS07105at 1476.291 kb on + strand, within DZA65_RS07105at 1476.357 kb on + strand, within DZA65_RS07105at 1476.357 kb on + strand, within DZA65_RS07105at 1476.357 kb on + strand, within DZA65_RS07105at 1476.357 kb on + strand, within DZA65_RS07105at 1476.379 kb on + strand, within DZA65_RS07105at 1476.379 kb on + strand, within DZA65_RS07105at 1476.380 kb on - strand, within DZA65_RS07105at 1476.380 kb on - strand, within DZA65_RS07105at 1476.380 kb on - strand, within DZA65_RS07105at 1476.380 kb on - strand, within DZA65_RS07105at 1476.409 kb on + strand, within DZA65_RS07105at 1476.411 kb on + strand, within DZA65_RS07105at 1476.411 kb on + strand, within DZA65_RS07105at 1476.411 kb on + strand, within DZA65_RS07105at 1476.411 kb on + strand, within DZA65_RS07105at 1476.412 kb on - strandat 1476.412 kb on - strand, within DZA65_RS07105at 1476.422 kb on - strand, within DZA65_RS07105at 1476.422 kb on - strand, within DZA65_RS07105at 1476.422 kb on - strand, within DZA65_RS07105at 1476.603 kb on + strand, within DZA65_RS07105at 1476.603 kb on + strand, within DZA65_RS07105at 1476.611 kb on - strandat 1476.634 kb on - strand, within DZA65_RS07105at 1476.640 kb on - strand, within DZA65_RS07105at 1476.675 kb on + strandat 1476.699 kb on + strandat 1476.699 kb on + strandat 1476.711 kb on + strandat 1476.736 kb on + strandat 1476.736 kb on + strandat 1476.736 kb on + strandat 1476.801 kb on - strandat 1476.837 kb on + strandat 1476.864 kb on + strandat 1476.888 kb on + strandat 1476.900 kb on + strandat 1476.900 kb on + strandat 1476.920 kb on + strandat 1476.921 kb on - strandat 1476.937 kb on + strandat 1476.937 kb on + strandat 1476.938 kb on - strandat 1477.132 kb on - strand, within DZA65_RS07110at 1477.144 kb on + strand, within DZA65_RS07110at 1477.144 kb on + strand, within DZA65_RS07110at 1477.144 kb on + strand, within DZA65_RS07110at 1477.144 kb on + strand, within DZA65_RS07110at 1477.144 kb on + strand, within DZA65_RS07110at 1477.145 kb on - strand, within DZA65_RS07110at 1477.145 kb on - strandat 1477.240 kb on + strand, within DZA65_RS07110at 1477.241 kb on - strand, within DZA65_RS07110at 1477.360 kb on + strand, within DZA65_RS07110at 1477.399 kb on + strand, within DZA65_RS07110at 1477.399 kb on + strand, within DZA65_RS07110at 1477.400 kb on - strand, within DZA65_RS07110at 1477.400 kb on - strand, within DZA65_RS07110at 1477.509 kb on - strand, within DZA65_RS07110at 1477.510 kb on + strand, within DZA65_RS07110at 1477.510 kb on + strand, within DZA65_RS07110at 1477.510 kb on + strand, within DZA65_RS07110at 1477.510 kb on + strand, within DZA65_RS07110at 1477.510 kb on + strand, within DZA65_RS07110at 1477.510 kb on + strand, within DZA65_RS07110at 1477.510 kb on + strand, within DZA65_RS07110at 1477.510 kb on + strand, within DZA65_RS07110at 1477.510 kb on + strand, within DZA65_RS07110at 1477.511 kb on - strand, within DZA65_RS07110at 1477.511 kb on - strand, within DZA65_RS07110at 1477.537 kb on + strand, within DZA65_RS07110at 1477.538 kb on - strand, within DZA65_RS07110at 1477.538 kb on - strand, within DZA65_RS07110at 1477.573 kb on + strand, within DZA65_RS07110at 1477.590 kb on + strand, within DZA65_RS07110at 1477.590 kb on + strand, within DZA65_RS07110at 1477.590 kb on + strand, within DZA65_RS07110at 1477.590 kb on + strand, within DZA65_RS07110at 1477.590 kb on + strandat 1477.591 kb on - strand, within DZA65_RS07110at 1477.591 kb on - strand, within DZA65_RS07110at 1477.730 kb on - strand, within DZA65_RS07110

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB
remove
1,474,862 - DZA65_RS07100 0.48 +1.4
1,474,862 - DZA65_RS07100 0.48 +1.2
1,474,862 - DZA65_RS07100 0.48 -1.0
1,474,919 + DZA65_RS07100 0.52 -0.1
1,474,919 + DZA65_RS07100 0.52 +1.0
1,474,920 - DZA65_RS07100 0.52 -0.3
1,474,930 + DZA65_RS07100 0.52 +0.4
1,474,931 - DZA65_RS07100 0.53 +0.3
1,474,931 - DZA65_RS07100 0.53 +0.9
1,474,940 - DZA65_RS07100 0.53 -1.3
1,475,023 + DZA65_RS07100 0.59 -0.6
1,475,044 + DZA65_RS07100 0.61 -0.2
1,475,044 + DZA65_RS07100 0.61 -0.4
1,475,045 - DZA65_RS07100 0.61 +0.7
1,475,045 - DZA65_RS07100 0.61 -0.5
1,475,048 - DZA65_RS07100 0.61 -0.7
1,475,072 + DZA65_RS07100 0.62 +1.0
1,475,072 + DZA65_RS07100 0.62 +0.7
1,475,072 + DZA65_RS07100 0.62 +0.2
1,475,072 + DZA65_RS07100 0.62 +0.2
1,475,072 + DZA65_RS07100 0.62 -0.6
1,475,072 + DZA65_RS07100 0.62 -1.0
1,475,072 + DZA65_RS07100 0.62 -2.3
1,475,073 - DZA65_RS07100 0.63 -1.2
1,475,073 - DZA65_RS07100 0.63 -0.1
1,475,073 - DZA65_RS07100 0.63 +0.8
1,475,073 - DZA65_RS07100 0.63 -0.3
1,475,074 + DZA65_RS07100 0.63 +0.2
1,475,075 - DZA65_RS07100 0.63 -0.3
1,475,075 - DZA65_RS07100 0.63 -0.2
1,475,114 + DZA65_RS07100 0.65 +0.0
1,475,114 + DZA65_RS07100 0.65 -0.7
1,475,114 + DZA65_RS07100 0.65 -1.3
1,475,115 - DZA65_RS07100 0.66 -0.2
1,475,152 + DZA65_RS07100 0.68 +0.1
1,475,152 + DZA65_RS07100 0.68 -1.3
1,475,173 + DZA65_RS07100 0.70 -1.0
1,475,173 + DZA65_RS07100 0.70 -2.0
1,475,174 - DZA65_RS07100 0.70 +0.3
1,475,174 - DZA65_RS07100 0.70 +0.2
1,475,254 + +1.0
1,475,254 + DZA65_RS07100 0.75 +0.0
1,475,279 - DZA65_RS07100 0.77 -0.8
1,475,323 - DZA65_RS07100 0.80 -2.0
1,475,335 + DZA65_RS07100 0.81 -0.9
1,475,335 + DZA65_RS07100 0.81 -0.8
1,475,336 - DZA65_RS07100 0.81 +0.4
1,475,336 - DZA65_RS07100 0.81 +0.8
1,475,420 + DZA65_RS07100 0.87 -0.5
1,475,421 - DZA65_RS07100 0.87 -0.6
1,475,423 + DZA65_RS07100 0.87 -0.3
1,475,423 + DZA65_RS07100 0.87 -0.5
1,475,423 + DZA65_RS07100 0.87 -0.7
1,475,423 + DZA65_RS07100 0.87 -0.2
1,475,424 - DZA65_RS07100 0.87 -0.1
1,475,424 - DZA65_RS07100 0.87 -0.7
1,475,434 + +1.4
1,475,481 + +0.1
1,475,482 - +0.4
1,475,502 - +0.4
1,475,516 + -0.6
1,475,517 - -0.3
1,475,561 - +0.3
1,475,601 - -0.2
1,475,601 - +0.1
1,475,625 + -0.4
1,475,822 + +0.7
1,475,823 - -2.3
1,475,854 + +0.7
1,475,925 - DZA65_RS07105 0.11 +0.3
1,476,007 + DZA65_RS07105 0.20 +0.5
1,476,007 + DZA65_RS07105 0.20 +0.2
1,476,033 + DZA65_RS07105 0.23 +1.0
1,476,055 - DZA65_RS07105 0.25 -0.9
1,476,055 - DZA65_RS07105 0.25 -0.4
1,476,061 - DZA65_RS07105 0.26 -1.1
1,476,064 + DZA65_RS07105 0.26 -0.9
1,476,064 + DZA65_RS07105 0.26 +0.7
1,476,064 + DZA65_RS07105 0.26 +1.2
1,476,065 - DZA65_RS07105 0.26 -0.5
1,476,065 - DZA65_RS07105 0.26 -1.3
1,476,077 + DZA65_RS07105 0.27 -0.2
1,476,077 + DZA65_RS07105 0.27 +0.7
1,476,163 + DZA65_RS07105 0.37 +0.6
1,476,192 + DZA65_RS07105 0.40 -2.2
1,476,193 - DZA65_RS07105 0.40 -0.2
1,476,193 - DZA65_RS07105 0.40 +0.7
1,476,198 + DZA65_RS07105 0.41 +0.3
1,476,199 - DZA65_RS07105 0.41 -0.4
1,476,217 + DZA65_RS07105 0.43 +0.1
1,476,222 + DZA65_RS07105 0.43 -0.8
1,476,223 - DZA65_RS07105 0.43 +0.4
1,476,223 - DZA65_RS07105 0.43 +0.0
1,476,252 + DZA65_RS07105 0.47 +0.5
1,476,253 - DZA65_RS07105 0.47 +0.1
1,476,254 + DZA65_RS07105 0.47 +0.5
1,476,254 + DZA65_RS07105 0.47 +0.4
1,476,254 + DZA65_RS07105 0.47 +0.2
1,476,255 - DZA65_RS07105 0.47 +0.4
1,476,277 - DZA65_RS07105 0.49 -0.7
1,476,279 + DZA65_RS07105 0.50 +0.4
1,476,291 + DZA65_RS07105 0.51 -0.4
1,476,357 + DZA65_RS07105 0.58 +0.3
1,476,357 + DZA65_RS07105 0.58 +1.5
1,476,357 + DZA65_RS07105 0.58 +0.1
1,476,357 + DZA65_RS07105 0.58 +1.0
1,476,379 + DZA65_RS07105 0.61 +0.8
1,476,379 + DZA65_RS07105 0.61 +0.8
1,476,380 - DZA65_RS07105 0.61 +0.7
1,476,380 - DZA65_RS07105 0.61 +0.0
1,476,380 - DZA65_RS07105 0.61 +1.1
1,476,380 - DZA65_RS07105 0.61 +0.6
1,476,409 + DZA65_RS07105 0.64 -1.3
1,476,411 + DZA65_RS07105 0.64 -1.0
1,476,411 + DZA65_RS07105 0.64 +0.2
1,476,411 + DZA65_RS07105 0.64 +0.1
1,476,411 + DZA65_RS07105 0.64 -0.1
1,476,412 - +2.0
1,476,412 - DZA65_RS07105 0.64 +1.3
1,476,422 - DZA65_RS07105 0.65 -0.3
1,476,422 - DZA65_RS07105 0.65 -0.2
1,476,422 - DZA65_RS07105 0.65 -0.9
1,476,603 + DZA65_RS07105 0.85 +0.1
1,476,603 + DZA65_RS07105 0.85 -0.7
1,476,611 - +0.0
1,476,634 - DZA65_RS07105 0.88 -0.9
1,476,640 - DZA65_RS07105 0.89 +0.2
1,476,675 + -1.2
1,476,699 + +1.0
1,476,699 + +0.1
1,476,711 + +0.7
1,476,736 + +0.2
1,476,736 + +0.1
1,476,736 + -0.5
1,476,801 - +1.4
1,476,837 + -0.1
1,476,864 + +0.2
1,476,888 + -0.9
1,476,900 + +0.1
1,476,900 + -0.4
1,476,920 + -0.9
1,476,921 - -0.9
1,476,937 + -1.6
1,476,937 + +0.3
1,476,938 - +0.1
1,477,132 - DZA65_RS07110 0.28 +1.0
1,477,144 + DZA65_RS07110 0.29 -2.3
1,477,144 + DZA65_RS07110 0.29 -0.7
1,477,144 + DZA65_RS07110 0.29 -0.6
1,477,144 + DZA65_RS07110 0.29 +0.6
1,477,144 + DZA65_RS07110 0.29 +0.2
1,477,145 - DZA65_RS07110 0.29 -0.7
1,477,145 - +1.6
1,477,240 + DZA65_RS07110 0.38 +1.7
1,477,241 - DZA65_RS07110 0.38 -1.3
1,477,360 + DZA65_RS07110 0.50 +0.4
1,477,399 + DZA65_RS07110 0.53 -0.1
1,477,399 + DZA65_RS07110 0.53 -0.2
1,477,400 - DZA65_RS07110 0.53 -1.0
1,477,400 - DZA65_RS07110 0.53 +0.5
1,477,509 - DZA65_RS07110 0.64 -0.2
1,477,510 + DZA65_RS07110 0.64 +1.7
1,477,510 + DZA65_RS07110 0.64 +0.3
1,477,510 + DZA65_RS07110 0.64 -0.7
1,477,510 + DZA65_RS07110 0.64 +0.1
1,477,510 + DZA65_RS07110 0.64 -0.8
1,477,510 + DZA65_RS07110 0.64 -0.7
1,477,510 + DZA65_RS07110 0.64 +0.7
1,477,510 + DZA65_RS07110 0.64 -0.7
1,477,510 + DZA65_RS07110 0.64 -0.2
1,477,511 - DZA65_RS07110 0.64 +0.0
1,477,511 - DZA65_RS07110 0.64 -0.7
1,477,537 + DZA65_RS07110 0.66 -0.1
1,477,538 - DZA65_RS07110 0.66 -0.2
1,477,538 - DZA65_RS07110 0.66 +0.2
1,477,573 + DZA65_RS07110 0.70 -0.1
1,477,590 + DZA65_RS07110 0.71 +0.8
1,477,590 + DZA65_RS07110 0.71 +0.5
1,477,590 + DZA65_RS07110 0.71 +0.4
1,477,590 + DZA65_RS07110 0.71 -0.1
1,477,590 + +1.0
1,477,591 - DZA65_RS07110 0.71 +0.5
1,477,591 - DZA65_RS07110 0.71 +0.3
1,477,730 - DZA65_RS07110 0.84 +0.8

Or see this region's nucleotide sequence