Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS06350 and DZA65_RS06355 are separated by 63 nucleotides DZA65_RS06355 and DZA65_RS06360 overlap by 33 nucleotides DZA65_RS06360 and DZA65_RS06365 overlap by 4 nucleotides
DZA65_RS06350: DZA65_RS06350 - SDR family oxidoreductase, at 1,321,766 to 1,322,542
_RS06350
DZA65_RS06355: DZA65_RS06355 - multifunctional acyl-CoA thioesterase I/protease I/lysophospholipase L1, at 1,322,606 to 1,323,247
_RS06355
DZA65_RS06360: DZA65_RS06360 - ABC transporter ATP-binding protein, at 1,323,215 to 1,323,901
_RS06360
DZA65_RS06365: DZA65_RS06365 - ABC transporter permease, at 1,323,898 to 1,326,330
_RS06365
Position (kb) 1323
1324 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1322.283 kb on + strand, within DZA65_RS06350 at 1322.316 kb on + strand, within DZA65_RS06350 at 1322.317 kb on - strand, within DZA65_RS06350 at 1322.338 kb on + strand, within DZA65_RS06350 at 1322.338 kb on + strand, within DZA65_RS06350 at 1322.542 kb on + strand at 1322.543 kb on - strand at 1322.548 kb on + strand at 1322.548 kb on + strand at 1322.548 kb on + strand at 1322.565 kb on + strand at 1322.565 kb on + strand at 1322.565 kb on + strand at 1322.570 kb on - strand at 1322.608 kb on - strand at 1322.617 kb on + strand at 1322.617 kb on + strand at 1322.618 kb on - strand at 1322.719 kb on - strand, within DZA65_RS06355 at 1322.752 kb on + strand, within DZA65_RS06355 at 1322.752 kb on + strand, within DZA65_RS06355 at 1322.752 kb on + strand, within DZA65_RS06355 at 1322.753 kb on - strand, within DZA65_RS06355 at 1322.800 kb on + strand, within DZA65_RS06355 at 1322.803 kb on - strand, within DZA65_RS06355 at 1322.803 kb on - strand, within DZA65_RS06355 at 1322.803 kb on - strand, within DZA65_RS06355 at 1322.814 kb on + strand, within DZA65_RS06355 at 1322.814 kb on + strand, within DZA65_RS06355 at 1322.814 kb on + strand, within DZA65_RS06355 at 1322.843 kb on + strand, within DZA65_RS06355 at 1322.875 kb on + strand, within DZA65_RS06355 at 1322.876 kb on - strand, within DZA65_RS06355 at 1322.876 kb on - strand, within DZA65_RS06355 at 1322.876 kb on - strand, within DZA65_RS06355 at 1322.876 kb on - strand, within DZA65_RS06355 at 1322.876 kb on - strand, within DZA65_RS06355 at 1323.118 kb on + strand, within DZA65_RS06355 at 1323.119 kb on - strand, within DZA65_RS06355 at 1323.134 kb on + strand, within DZA65_RS06355 at 1323.135 kb on - strand, within DZA65_RS06355 at 1323.135 kb on - strand, within DZA65_RS06355 at 1323.160 kb on + strand, within DZA65_RS06355 at 1323.160 kb on + strand, within DZA65_RS06355 at 1323.160 kb on + strand, within DZA65_RS06355 at 1323.160 kb on + strand, within DZA65_RS06355 at 1323.161 kb on - strand, within DZA65_RS06355 at 1323.200 kb on + strand at 1323.201 kb on - strand at 1323.201 kb on - strand at 1323.214 kb on + strand at 1323.215 kb on - strand at 1323.215 kb on - strand at 1323.250 kb on + strand at 1323.250 kb on + strand at 1323.250 kb on + strand at 1323.251 kb on - strand at 1323.254 kb on - strand at 1323.254 kb on - strand at 1323.254 kb on - strand at 1323.505 kb on + strand, within DZA65_RS06360 at 1323.505 kb on + strand, within DZA65_RS06360 at 1323.506 kb on - strand, within DZA65_RS06360 at 1323.506 kb on - strand, within DZA65_RS06360 at 1323.697 kb on + strand, within DZA65_RS06360 at 1323.697 kb on + strand, within DZA65_RS06360 at 1323.697 kb on + strand, within DZA65_RS06360 at 1323.808 kb on + strand, within DZA65_RS06360 at 1323.950 kb on + strand at 1323.950 kb on + strand at 1323.950 kb on + strand at 1323.951 kb on - strand at 1323.951 kb on - strand at 1323.951 kb on - strand at 1323.951 kb on - strand at 1324.162 kb on + strand, within DZA65_RS06365 at 1324.162 kb on + strand, within DZA65_RS06365 at 1324.162 kb on + strand, within DZA65_RS06365 at 1324.162 kb on + strand, within DZA65_RS06365 at 1324.162 kb on + strand, within DZA65_RS06365 at 1324.222 kb on + strand, within DZA65_RS06365 at 1324.222 kb on + strand, within DZA65_RS06365 at 1324.222 kb on + strand, within DZA65_RS06365 at 1324.223 kb on - strand, within DZA65_RS06365 at 1324.223 kb on - strand, within DZA65_RS06365 at 1324.223 kb on - strand, within DZA65_RS06365 at 1324.350 kb on - strand, within DZA65_RS06365 at 1324.473 kb on + strand, within DZA65_RS06365 at 1324.474 kb on - strand, within DZA65_RS06365 at 1324.476 kb on + strand, within DZA65_RS06365 at 1324.476 kb on + strand, within DZA65_RS06365 at 1324.477 kb on - strand, within DZA65_RS06365 at 1324.477 kb on - strand, within DZA65_RS06365 at 1324.486 kb on + strand, within DZA65_RS06365 at 1324.486 kb on + strand, within DZA65_RS06365 at 1324.486 kb on + strand, within DZA65_RS06365 at 1324.486 kb on + strand, within DZA65_RS06365 at 1324.486 kb on + strand, within DZA65_RS06365 at 1324.488 kb on + strand, within DZA65_RS06365 at 1324.488 kb on + strand, within DZA65_RS06365 at 1324.488 kb on + strand, within DZA65_RS06365 at 1324.489 kb on - strand, within DZA65_RS06365 at 1324.489 kb on - strand, within DZA65_RS06365 at 1324.489 kb on - strand, within DZA65_RS06365 at 1324.489 kb on - strand, within DZA65_RS06365 at 1324.489 kb on - strand, within DZA65_RS06365 at 1324.489 kb on - strand, within DZA65_RS06365 at 1324.489 kb on - strand, within DZA65_RS06365 at 1324.489 kb on - strand, within DZA65_RS06365 at 1324.528 kb on + strand, within DZA65_RS06365 at 1324.529 kb on - strand, within DZA65_RS06365 at 1324.529 kb on - strand, within DZA65_RS06365 at 1324.529 kb on - strand, within DZA65_RS06365 at 1324.529 kb on - strand, within DZA65_RS06365 at 1324.529 kb on - strand, within DZA65_RS06365 at 1324.529 kb on - strand, within DZA65_RS06365 at 1324.533 kb on + strand, within DZA65_RS06365 at 1324.567 kb on + strand, within DZA65_RS06365 at 1324.567 kb on + strand, within DZA65_RS06365 at 1324.693 kb on + strand, within DZA65_RS06365 at 1324.694 kb on - strand, within DZA65_RS06365 at 1324.694 kb on - strand, within DZA65_RS06365 at 1324.694 kb on - strand, within DZA65_RS06365 at 1324.694 kb on - strand, within DZA65_RS06365
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,322,283 + DZA65_RS06350 0.67 +0.2 1,322,316 + DZA65_RS06350 0.71 +0.1 1,322,317 - DZA65_RS06350 0.71 +1.1 1,322,338 + DZA65_RS06350 0.74 -0.9 1,322,338 + DZA65_RS06350 0.74 -0.7 1,322,542 + +0.1 1,322,543 - +1.0 1,322,548 + +0.5 1,322,548 + +0.2 1,322,548 + -0.1 1,322,565 + +1.3 1,322,565 + +0.1 1,322,565 + +0.3 1,322,570 - +0.5 1,322,608 - -1.6 1,322,617 + -0.1 1,322,617 + +0.1 1,322,618 - -1.6 1,322,719 - DZA65_RS06355 0.18 +0.1 1,322,752 + DZA65_RS06355 0.23 -0.1 1,322,752 + DZA65_RS06355 0.23 -2.6 1,322,752 + DZA65_RS06355 0.23 +1.5 1,322,753 - DZA65_RS06355 0.23 -0.1 1,322,800 + DZA65_RS06355 0.30 -0.1 1,322,803 - DZA65_RS06355 0.31 -0.9 1,322,803 - DZA65_RS06355 0.31 -2.4 1,322,803 - DZA65_RS06355 0.31 -0.4 1,322,814 + DZA65_RS06355 0.32 +0.4 1,322,814 + DZA65_RS06355 0.32 -0.4 1,322,814 + DZA65_RS06355 0.32 -0.1 1,322,843 + DZA65_RS06355 0.37 -0.0 1,322,875 + DZA65_RS06355 0.42 -0.6 1,322,876 - DZA65_RS06355 0.42 -0.1 1,322,876 - DZA65_RS06355 0.42 +0.4 1,322,876 - DZA65_RS06355 0.42 -0.4 1,322,876 - DZA65_RS06355 0.42 +0.5 1,322,876 - DZA65_RS06355 0.42 +0.8 1,323,118 + DZA65_RS06355 0.80 -0.9 1,323,119 - DZA65_RS06355 0.80 -0.0 1,323,134 + DZA65_RS06355 0.82 -0.1 1,323,135 - DZA65_RS06355 0.82 +0.8 1,323,135 - DZA65_RS06355 0.82 -0.4 1,323,160 + DZA65_RS06355 0.86 -0.4 1,323,160 + DZA65_RS06355 0.86 +0.3 1,323,160 + DZA65_RS06355 0.86 -2.0 1,323,160 + DZA65_RS06355 0.86 +0.3 1,323,161 - DZA65_RS06355 0.86 +0.7 1,323,200 + +0.2 1,323,201 - -0.5 1,323,201 - -0.2 1,323,214 + +0.6 1,323,215 - +0.3 1,323,215 - -0.7 1,323,250 + +0.3 1,323,250 + -1.1 1,323,250 + -0.1 1,323,251 - -0.4 1,323,254 - +0.9 1,323,254 - +0.4 1,323,254 - +0.6 1,323,505 + DZA65_RS06360 0.42 +0.4 1,323,505 + DZA65_RS06360 0.42 +0.3 1,323,506 - DZA65_RS06360 0.42 -1.3 1,323,506 - DZA65_RS06360 0.42 +0.1 1,323,697 + DZA65_RS06360 0.70 +0.4 1,323,697 + DZA65_RS06360 0.70 -1.1 1,323,697 + DZA65_RS06360 0.70 -1.3 1,323,808 + DZA65_RS06360 0.86 -1.4 1,323,950 + -1.3 1,323,950 + -1.7 1,323,950 + +0.5 1,323,951 - -0.9 1,323,951 - -0.4 1,323,951 - +0.6 1,323,951 - -0.6 1,324,162 + DZA65_RS06365 0.11 -0.4 1,324,162 + DZA65_RS06365 0.11 -0.3 1,324,162 + DZA65_RS06365 0.11 -1.0 1,324,162 + DZA65_RS06365 0.11 +0.4 1,324,162 + DZA65_RS06365 0.11 +2.1 1,324,222 + DZA65_RS06365 0.13 +0.5 1,324,222 + DZA65_RS06365 0.13 +1.1 1,324,222 + DZA65_RS06365 0.13 +0.0 1,324,223 - DZA65_RS06365 0.13 +0.6 1,324,223 - DZA65_RS06365 0.13 -0.6 1,324,223 - DZA65_RS06365 0.13 -0.3 1,324,350 - DZA65_RS06365 0.19 -0.5 1,324,473 + DZA65_RS06365 0.24 +0.4 1,324,474 - DZA65_RS06365 0.24 +0.0 1,324,476 + DZA65_RS06365 0.24 -0.3 1,324,476 + DZA65_RS06365 0.24 -0.4 1,324,477 - DZA65_RS06365 0.24 -0.4 1,324,477 - DZA65_RS06365 0.24 -0.4 1,324,486 + DZA65_RS06365 0.24 +0.6 1,324,486 + DZA65_RS06365 0.24 -0.5 1,324,486 + DZA65_RS06365 0.24 +0.6 1,324,486 + DZA65_RS06365 0.24 -0.6 1,324,486 + DZA65_RS06365 0.24 +0.4 1,324,488 + DZA65_RS06365 0.24 +0.4 1,324,488 + DZA65_RS06365 0.24 +0.2 1,324,488 + DZA65_RS06365 0.24 -0.1 1,324,489 - DZA65_RS06365 0.24 -2.1 1,324,489 - DZA65_RS06365 0.24 -0.4 1,324,489 - DZA65_RS06365 0.24 -0.3 1,324,489 - DZA65_RS06365 0.24 -0.4 1,324,489 - DZA65_RS06365 0.24 -0.7 1,324,489 - DZA65_RS06365 0.24 +0.8 1,324,489 - DZA65_RS06365 0.24 +0.6 1,324,489 - DZA65_RS06365 0.24 -0.1 1,324,528 + DZA65_RS06365 0.26 -0.7 1,324,529 - DZA65_RS06365 0.26 -0.6 1,324,529 - DZA65_RS06365 0.26 -0.1 1,324,529 - DZA65_RS06365 0.26 +0.4 1,324,529 - DZA65_RS06365 0.26 -2.4 1,324,529 - DZA65_RS06365 0.26 +1.1 1,324,529 - DZA65_RS06365 0.26 +1.8 1,324,533 + DZA65_RS06365 0.26 +1.3 1,324,567 + DZA65_RS06365 0.27 -0.6 1,324,567 + DZA65_RS06365 0.27 +0.9 1,324,693 + DZA65_RS06365 0.33 -0.6 1,324,694 - DZA65_RS06365 0.33 +0.5 1,324,694 - DZA65_RS06365 0.33 -0.7 1,324,694 - DZA65_RS06365 0.33 -0.5 1,324,694 - DZA65_RS06365 0.33 -0.0
Or see this region's nucleotide sequence