Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS06225 and DZA65_RS06230 are separated by 123 nucleotides DZA65_RS06230 and DZA65_RS06235 are separated by 98 nucleotides DZA65_RS06235 and DZA65_RS06240 overlap by 1 nucleotides
DZA65_RS06225: DZA65_RS06225 - copper-exporting P-type ATPase CopA, at 1,289,060 to 1,291,876
_RS06225
DZA65_RS06230: DZA65_RS06230 - Cu(I)-responsive transcriptional regulator, at 1,292,000 to 1,292,422
_RS06230
DZA65_RS06235: DZA65_RS06235 - NfeD family protein, at 1,292,521 to 1,292,973
_RS06235
DZA65_RS06240: DZA65_RS06240 - SPFH/Band 7/PHB domain protein, at 1,292,973 to 1,293,887
_RS06240
Position (kb) 1291
1292
1293 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 1291.286 kb on + strand, within DZA65_RS06225 at 1291.286 kb on + strand, within DZA65_RS06225 at 1291.287 kb on - strand, within DZA65_RS06225 at 1291.287 kb on - strand, within DZA65_RS06225 at 1291.287 kb on - strand, within DZA65_RS06225 at 1291.287 kb on - strand, within DZA65_RS06225 at 1291.287 kb on - strand, within DZA65_RS06225 at 1291.330 kb on + strand, within DZA65_RS06225 at 1291.330 kb on + strand, within DZA65_RS06225 at 1291.330 kb on + strand, within DZA65_RS06225 at 1291.330 kb on + strand, within DZA65_RS06225 at 1291.330 kb on + strand, within DZA65_RS06225 at 1291.330 kb on + strand, within DZA65_RS06225 at 1291.331 kb on - strand, within DZA65_RS06225 at 1291.331 kb on - strand, within DZA65_RS06225 at 1291.331 kb on - strand, within DZA65_RS06225 at 1291.331 kb on - strand, within DZA65_RS06225 at 1291.331 kb on - strand, within DZA65_RS06225 at 1291.331 kb on - strand, within DZA65_RS06225 at 1291.331 kb on - strand, within DZA65_RS06225 at 1291.548 kb on + strand at 1291.549 kb on - strand, within DZA65_RS06225 at 1291.549 kb on - strand, within DZA65_RS06225 at 1291.571 kb on - strand, within DZA65_RS06225 at 1291.678 kb on + strand at 1291.758 kb on + strand at 1291.862 kb on + strand at 1291.863 kb on - strand at 1291.863 kb on - strand at 1291.863 kb on - strand at 1291.876 kb on + strand at 1291.876 kb on + strand at 1291.876 kb on + strand at 1291.876 kb on + strand at 1291.876 kb on + strand at 1291.876 kb on + strand at 1291.876 kb on + strand at 1291.876 kb on + strand at 1291.877 kb on - strand at 1291.877 kb on - strand at 1291.877 kb on - strand at 1291.877 kb on - strand at 1291.877 kb on - strand at 1291.879 kb on + strand at 1291.879 kb on + strand at 1291.879 kb on + strand at 1291.879 kb on + strand at 1291.879 kb on + strand at 1291.879 kb on + strand at 1291.879 kb on + strand at 1291.880 kb on - strand at 1291.880 kb on - strand at 1291.880 kb on - strand at 1291.883 kb on - strand at 1291.883 kb on - strand at 1291.883 kb on - strand at 1291.883 kb on - strand at 1291.940 kb on + strand at 1291.946 kb on + strand at 1291.946 kb on + strand at 1291.946 kb on + strand at 1291.946 kb on + strand at 1291.946 kb on + strand at 1291.946 kb on + strand at 1291.946 kb on + strand at 1291.947 kb on - strand at 1291.947 kb on - strand at 1291.947 kb on - strand at 1291.947 kb on - strand at 1291.953 kb on + strand at 1292.005 kb on + strand at 1292.006 kb on - strand at 1292.057 kb on + strand, within DZA65_RS06230 at 1292.057 kb on + strand, within DZA65_RS06230 at 1292.058 kb on - strand, within DZA65_RS06230 at 1292.058 kb on - strand, within DZA65_RS06230 at 1292.058 kb on - strand, within DZA65_RS06230 at 1292.114 kb on + strand, within DZA65_RS06230 at 1292.115 kb on - strand, within DZA65_RS06230 at 1292.115 kb on - strand, within DZA65_RS06230 at 1292.115 kb on - strand, within DZA65_RS06230 at 1292.128 kb on + strand, within DZA65_RS06230 at 1292.128 kb on + strand, within DZA65_RS06230 at 1292.128 kb on + strand, within DZA65_RS06230 at 1292.128 kb on + strand at 1292.129 kb on - strand, within DZA65_RS06230 at 1292.129 kb on - strand, within DZA65_RS06230 at 1292.129 kb on - strand, within DZA65_RS06230 at 1292.293 kb on + strand, within DZA65_RS06230 at 1292.293 kb on + strand, within DZA65_RS06230 at 1292.294 kb on - strand, within DZA65_RS06230 at 1292.294 kb on - strand, within DZA65_RS06230 at 1292.294 kb on - strand, within DZA65_RS06230 at 1292.294 kb on - strand, within DZA65_RS06230 at 1292.446 kb on + strand at 1292.446 kb on + strand at 1292.446 kb on + strand at 1292.446 kb on + strand at 1292.446 kb on + strand at 1292.465 kb on + strand at 1292.465 kb on + strand at 1292.465 kb on + strand at 1292.466 kb on - strand at 1292.466 kb on - strand at 1292.466 kb on - strand at 1292.466 kb on - strand at 1292.494 kb on + strand at 1292.494 kb on + strand at 1292.494 kb on + strand at 1292.494 kb on + strand at 1292.494 kb on + strand at 1292.494 kb on + strand at 1292.495 kb on - strand at 1292.495 kb on - strand at 1292.495 kb on - strand at 1292.495 kb on - strand at 1292.547 kb on + strand at 1292.547 kb on + strand at 1292.547 kb on + strand at 1292.547 kb on + strand at 1292.673 kb on + strand, within DZA65_RS06235 at 1292.673 kb on + strand, within DZA65_RS06235 at 1292.673 kb on + strand, within DZA65_RS06235 at 1292.673 kb on + strand, within DZA65_RS06235 at 1292.673 kb on + strand, within DZA65_RS06235 at 1292.673 kb on + strand, within DZA65_RS06235 at 1292.674 kb on - strand, within DZA65_RS06235 at 1292.674 kb on - strand, within DZA65_RS06235 at 1292.674 kb on - strand, within DZA65_RS06235 at 1292.674 kb on - strand, within DZA65_RS06235 at 1292.674 kb on - strand, within DZA65_RS06235 at 1292.674 kb on - strand, within DZA65_RS06235 at 1292.674 kb on - strand, within DZA65_RS06235 at 1292.676 kb on + strand, within DZA65_RS06235 at 1292.676 kb on + strand at 1292.676 kb on + strand, within DZA65_RS06235 at 1292.676 kb on + strand, within DZA65_RS06235 at 1292.676 kb on + strand, within DZA65_RS06235 at 1292.676 kb on + strand, within DZA65_RS06235 at 1292.676 kb on + strand, within DZA65_RS06235 at 1292.677 kb on - strand, within DZA65_RS06235 at 1292.677 kb on - strand, within DZA65_RS06235 at 1292.677 kb on - strand, within DZA65_RS06235 at 1292.677 kb on - strand, within DZA65_RS06235 at 1292.677 kb on - strand, within DZA65_RS06235 at 1292.677 kb on - strand, within DZA65_RS06235 at 1292.677 kb on - strand, within DZA65_RS06235 at 1292.677 kb on - strand, within DZA65_RS06235 at 1292.677 kb on - strand, within DZA65_RS06235 at 1292.677 kb on - strand, within DZA65_RS06235 at 1292.974 kb on + strand at 1292.974 kb on + strand at 1292.974 kb on + strand at 1292.974 kb on + strand at 1292.974 kb on + strand at 1292.974 kb on + strand at 1293.112 kb on + strand, within DZA65_RS06240 at 1293.112 kb on + strand, within DZA65_RS06240 at 1293.113 kb on - strand, within DZA65_RS06240 at 1293.113 kb on - strand, within DZA65_RS06240 at 1293.130 kb on + strand, within DZA65_RS06240 at 1293.130 kb on + strand, within DZA65_RS06240 at 1293.130 kb on + strand, within DZA65_RS06240 at 1293.131 kb on - strand, within DZA65_RS06240 at 1293.131 kb on - strand, within DZA65_RS06240 at 1293.146 kb on + strand, within DZA65_RS06240 at 1293.146 kb on + strand, within DZA65_RS06240 at 1293.146 kb on + strand, within DZA65_RS06240 at 1293.332 kb on + strand, within DZA65_RS06240 at 1293.333 kb on - strand, within DZA65_RS06240
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,291,286 + DZA65_RS06225 0.79 +0.2 1,291,286 + DZA65_RS06225 0.79 -1.7 1,291,287 - DZA65_RS06225 0.79 +0.2 1,291,287 - DZA65_RS06225 0.79 +0.6 1,291,287 - DZA65_RS06225 0.79 -0.9 1,291,287 - DZA65_RS06225 0.79 -0.5 1,291,287 - DZA65_RS06225 0.79 +1.2 1,291,330 + DZA65_RS06225 0.81 -1.5 1,291,330 + DZA65_RS06225 0.81 +0.8 1,291,330 + DZA65_RS06225 0.81 +2.8 1,291,330 + DZA65_RS06225 0.81 +0.4 1,291,330 + DZA65_RS06225 0.81 -0.4 1,291,330 + DZA65_RS06225 0.81 -1.4 1,291,331 - DZA65_RS06225 0.81 +0.1 1,291,331 - DZA65_RS06225 0.81 -1.5 1,291,331 - DZA65_RS06225 0.81 -1.6 1,291,331 - DZA65_RS06225 0.81 -0.7 1,291,331 - DZA65_RS06225 0.81 -0.5 1,291,331 - DZA65_RS06225 0.81 -0.8 1,291,331 - DZA65_RS06225 0.81 -0.3 1,291,548 + +2.4 1,291,549 - DZA65_RS06225 0.88 -1.5 1,291,549 - DZA65_RS06225 0.88 +1.3 1,291,571 - DZA65_RS06225 0.89 -0.4 1,291,678 + -1.5 1,291,758 + +0.2 1,291,862 + -1.0 1,291,863 - +0.3 1,291,863 - +0.1 1,291,863 - -1.4 1,291,876 + -0.5 1,291,876 + -0.9 1,291,876 + +0.9 1,291,876 + -1.2 1,291,876 + +0.1 1,291,876 + -0.1 1,291,876 + +0.4 1,291,876 + +0.0 1,291,877 - -0.0 1,291,877 - +0.2 1,291,877 - -0.6 1,291,877 - +0.1 1,291,877 - +1.1 1,291,879 + -0.9 1,291,879 + +0.8 1,291,879 + +0.1 1,291,879 + -0.5 1,291,879 + +0.6 1,291,879 + -0.0 1,291,879 + +0.7 1,291,880 - +0.2 1,291,880 - +0.2 1,291,880 - +1.8 1,291,883 - -0.1 1,291,883 - +0.1 1,291,883 - +0.5 1,291,883 - -0.6 1,291,940 + -0.2 1,291,946 + -0.3 1,291,946 + -0.8 1,291,946 + -0.6 1,291,946 + +0.6 1,291,946 + +1.7 1,291,946 + -0.2 1,291,946 + +1.7 1,291,947 - +1.2 1,291,947 - -0.9 1,291,947 - +0.9 1,291,947 - +0.2 1,291,953 + -0.2 1,292,005 + -0.2 1,292,006 - -0.5 1,292,057 + DZA65_RS06230 0.13 -0.1 1,292,057 + DZA65_RS06230 0.13 +0.1 1,292,058 - DZA65_RS06230 0.14 -1.5 1,292,058 - DZA65_RS06230 0.14 +0.8 1,292,058 - DZA65_RS06230 0.14 -1.9 1,292,114 + DZA65_RS06230 0.27 -2.4 1,292,115 - DZA65_RS06230 0.27 -0.1 1,292,115 - DZA65_RS06230 0.27 -0.3 1,292,115 - DZA65_RS06230 0.27 -0.9 1,292,128 + DZA65_RS06230 0.30 -0.6 1,292,128 + DZA65_RS06230 0.30 +0.7 1,292,128 + DZA65_RS06230 0.30 -0.4 1,292,128 + +1.1 1,292,129 - DZA65_RS06230 0.30 +0.4 1,292,129 - DZA65_RS06230 0.30 -0.2 1,292,129 - DZA65_RS06230 0.30 -0.5 1,292,293 + DZA65_RS06230 0.69 +0.3 1,292,293 + DZA65_RS06230 0.69 -0.5 1,292,294 - DZA65_RS06230 0.70 -1.3 1,292,294 - DZA65_RS06230 0.70 +0.4 1,292,294 - DZA65_RS06230 0.70 -2.1 1,292,294 - DZA65_RS06230 0.70 -0.2 1,292,446 + +1.1 1,292,446 + +1.6 1,292,446 + -0.6 1,292,446 + -1.0 1,292,446 + -0.9 1,292,465 + -1.0 1,292,465 + -1.3 1,292,465 + +0.2 1,292,466 - -0.1 1,292,466 - -0.7 1,292,466 - -1.8 1,292,466 - -0.2 1,292,494 + -0.5 1,292,494 + -0.1 1,292,494 + +0.3 1,292,494 + +0.3 1,292,494 + -0.3 1,292,494 + +0.3 1,292,495 - +0.7 1,292,495 - -1.4 1,292,495 - +1.2 1,292,495 - +0.1 1,292,547 + +2.1 1,292,547 + +0.1 1,292,547 + -1.3 1,292,547 + -0.2 1,292,673 + DZA65_RS06235 0.34 +0.1 1,292,673 + DZA65_RS06235 0.34 -1.9 1,292,673 + DZA65_RS06235 0.34 +0.7 1,292,673 + DZA65_RS06235 0.34 -0.5 1,292,673 + DZA65_RS06235 0.34 +1.1 1,292,673 + DZA65_RS06235 0.34 -0.5 1,292,674 - DZA65_RS06235 0.34 +0.4 1,292,674 - DZA65_RS06235 0.34 -2.4 1,292,674 - DZA65_RS06235 0.34 -0.7 1,292,674 - DZA65_RS06235 0.34 -0.1 1,292,674 - DZA65_RS06235 0.34 -0.0 1,292,674 - DZA65_RS06235 0.34 -0.7 1,292,674 - DZA65_RS06235 0.34 +1.1 1,292,676 + DZA65_RS06235 0.34 +0.3 1,292,676 + +1.5 1,292,676 + DZA65_RS06235 0.34 -0.1 1,292,676 + DZA65_RS06235 0.34 -0.9 1,292,676 + DZA65_RS06235 0.34 -1.3 1,292,676 + DZA65_RS06235 0.34 -0.3 1,292,676 + DZA65_RS06235 0.34 +0.5 1,292,677 - DZA65_RS06235 0.34 -2.9 1,292,677 - DZA65_RS06235 0.34 +0.1 1,292,677 - DZA65_RS06235 0.34 +0.5 1,292,677 - DZA65_RS06235 0.34 -2.7 1,292,677 - DZA65_RS06235 0.34 -0.1 1,292,677 - DZA65_RS06235 0.34 +0.8 1,292,677 - DZA65_RS06235 0.34 -1.4 1,292,677 - DZA65_RS06235 0.34 -0.3 1,292,677 - DZA65_RS06235 0.34 +0.2 1,292,677 - DZA65_RS06235 0.34 -2.0 1,292,974 + -0.5 1,292,974 + +0.4 1,292,974 + +0.2 1,292,974 + +0.2 1,292,974 + +0.2 1,292,974 + -1.2 1,293,112 + DZA65_RS06240 0.15 -0.8 1,293,112 + DZA65_RS06240 0.15 -1.4 1,293,113 - DZA65_RS06240 0.15 -0.4 1,293,113 - DZA65_RS06240 0.15 -0.8 1,293,130 + DZA65_RS06240 0.17 +0.2 1,293,130 + DZA65_RS06240 0.17 +0.5 1,293,130 + DZA65_RS06240 0.17 -0.9 1,293,131 - DZA65_RS06240 0.17 +0.2 1,293,131 - DZA65_RS06240 0.17 -0.3 1,293,146 + DZA65_RS06240 0.19 -0.8 1,293,146 + DZA65_RS06240 0.19 -0.8 1,293,146 + DZA65_RS06240 0.19 +1.7 1,293,332 + DZA65_RS06240 0.39 +0.1 1,293,333 - DZA65_RS06240 0.39 -1.2
Or see this region's nucleotide sequence