Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS05785

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS05775 and DZA65_RS05785 are separated by 750 nucleotidesDZA65_RS05785 and DZA65_RS05790 are separated by 46 nucleotides DZA65_RS05775: DZA65_RS05775 - pyrimidine/purine nucleoside phosphorylase, at 1,185,925 to 1,186,209 _RS05775 DZA65_RS05785: DZA65_RS05785 - methyl-accepting chemotaxis protein, at 1,186,960 to 1,188,750 _RS05785 DZA65_RS05790: DZA65_RS05790 - recombination-associated protein RdgC, at 1,188,797 to 1,189,708 _RS05790 Position (kb) 1186 1187 1188 1189Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1186.027 kb on + strand, within DZA65_RS05775at 1186.027 kb on + strand, within DZA65_RS05775at 1186.027 kb on + strand, within DZA65_RS05775at 1186.028 kb on - strand, within DZA65_RS05775at 1186.029 kb on + strand, within DZA65_RS05775at 1186.030 kb on - strand, within DZA65_RS05775at 1186.030 kb on - strand, within DZA65_RS05775at 1186.030 kb on - strand, within DZA65_RS05775at 1186.030 kb on - strand, within DZA65_RS05775at 1186.064 kb on + strand, within DZA65_RS05775at 1186.137 kb on + strand, within DZA65_RS05775at 1186.189 kb on + strandat 1186.189 kb on + strandat 1186.190 kb on - strandat 1186.190 kb on - strandat 1186.202 kb on - strandat 1186.219 kb on + strandat 1186.272 kb on + strandat 1186.272 kb on + strandat 1186.272 kb on + strandat 1186.273 kb on - strandat 1186.273 kb on - strandat 1186.275 kb on + strandat 1186.275 kb on + strandat 1186.276 kb on - strandat 1186.294 kb on + strandat 1186.295 kb on - strandat 1186.297 kb on - strandat 1186.297 kb on - strandat 1186.315 kb on - strandat 1186.316 kb on + strandat 1186.316 kb on + strandat 1186.317 kb on - strandat 1186.317 kb on - strandat 1186.334 kb on + strandat 1186.335 kb on - strandat 1186.336 kb on + strandat 1186.337 kb on - strandat 1186.337 kb on - strandat 1186.337 kb on - strandat 1186.337 kb on - strandat 1186.407 kb on + strandat 1186.407 kb on + strandat 1186.408 kb on - strandat 1186.429 kb on + strandat 1186.439 kb on + strandat 1186.493 kb on + strandat 1186.497 kb on + strandat 1186.497 kb on + strandat 1186.497 kb on + strandat 1186.498 kb on - strandat 1186.498 kb on - strandat 1186.511 kb on + strandat 1186.525 kb on + strandat 1186.525 kb on + strandat 1186.525 kb on + strandat 1186.585 kb on - strandat 1186.585 kb on - strandat 1186.585 kb on - strandat 1186.707 kb on + strandat 1186.718 kb on + strandat 1186.718 kb on + strandat 1186.719 kb on - strandat 1186.719 kb on - strandat 1186.719 kb on - strandat 1186.719 kb on - strandat 1186.733 kb on + strandat 1186.791 kb on + strandat 1186.833 kb on + strandat 1186.848 kb on + strandat 1186.848 kb on + strandat 1186.848 kb on + strandat 1186.849 kb on - strandat 1186.849 kb on - strandat 1186.849 kb on - strandat 1186.849 kb on - strandat 1186.855 kb on + strandat 1186.855 kb on + strandat 1186.855 kb on + strandat 1186.855 kb on + strandat 1186.855 kb on + strandat 1186.855 kb on + strandat 1186.856 kb on - strandat 1186.856 kb on - strandat 1186.856 kb on - strandat 1186.856 kb on - strandat 1186.856 kb on - strandat 1186.881 kb on - strandat 1186.899 kb on - strandat 1186.923 kb on + strandat 1186.924 kb on - strandat 1186.928 kb on - strandat 1186.928 kb on - strandat 1186.928 kb on - strandat 1186.945 kb on - strandat 1186.948 kb on + strandat 1186.948 kb on + strandat 1186.957 kb on - strandat 1186.957 kb on - strandat 1186.959 kb on + strandat 1186.959 kb on + strandat 1186.959 kb on + strandat 1186.960 kb on - strandat 1186.965 kb on + strandat 1186.965 kb on + strandat 1186.965 kb on + strandat 1186.965 kb on + strandat 1186.966 kb on - strandat 1186.966 kb on - strandat 1186.966 kb on - strandat 1186.966 kb on - strandat 1186.989 kb on - strandat 1186.989 kb on - strandat 1186.998 kb on + strandat 1187.025 kb on - strandat 1187.028 kb on + strandat 1187.028 kb on + strandat 1187.029 kb on - strandat 1187.029 kb on - strandat 1187.062 kb on + strandat 1187.062 kb on + strandat 1187.062 kb on + strandat 1187.063 kb on - strandat 1187.063 kb on - strandat 1187.063 kb on - strandat 1187.063 kb on - strandat 1187.063 kb on - strandat 1187.063 kb on - strandat 1187.064 kb on + strandat 1187.064 kb on + strandat 1187.065 kb on - strandat 1187.082 kb on + strandat 1187.157 kb on + strand, within DZA65_RS05785at 1187.157 kb on + strand, within DZA65_RS05785at 1187.157 kb on + strand, within DZA65_RS05785at 1187.157 kb on + strand, within DZA65_RS05785at 1187.157 kb on + strand, within DZA65_RS05785at 1187.158 kb on - strand, within DZA65_RS05785at 1187.158 kb on - strand, within DZA65_RS05785at 1187.169 kb on + strand, within DZA65_RS05785at 1187.245 kb on + strand, within DZA65_RS05785at 1187.245 kb on + strand, within DZA65_RS05785at 1187.245 kb on + strand, within DZA65_RS05785at 1187.245 kb on + strand, within DZA65_RS05785at 1187.245 kb on + strand, within DZA65_RS05785at 1187.245 kb on + strand, within DZA65_RS05785at 1187.245 kb on + strand, within DZA65_RS05785at 1187.245 kb on + strand, within DZA65_RS05785at 1187.245 kb on + strand, within DZA65_RS05785at 1187.246 kb on - strand, within DZA65_RS05785at 1187.246 kb on - strand, within DZA65_RS05785at 1187.246 kb on - strand, within DZA65_RS05785at 1187.246 kb on - strand, within DZA65_RS05785at 1187.246 kb on - strand, within DZA65_RS05785at 1187.246 kb on - strand, within DZA65_RS05785at 1187.246 kb on - strand, within DZA65_RS05785at 1187.246 kb on - strand, within DZA65_RS05785at 1187.246 kb on - strand, within DZA65_RS05785at 1187.246 kb on - strand, within DZA65_RS05785at 1187.246 kb on - strand, within DZA65_RS05785at 1187.246 kb on - strand, within DZA65_RS05785at 1187.246 kb on - strand, within DZA65_RS05785at 1187.246 kb on - strand, within DZA65_RS05785at 1187.247 kb on + strand, within DZA65_RS05785at 1187.254 kb on + strand, within DZA65_RS05785at 1187.255 kb on - strand, within DZA65_RS05785at 1187.305 kb on + strand, within DZA65_RS05785at 1187.305 kb on + strand, within DZA65_RS05785at 1187.305 kb on + strand, within DZA65_RS05785at 1187.305 kb on + strand, within DZA65_RS05785at 1187.305 kb on + strandat 1187.306 kb on - strand, within DZA65_RS05785at 1187.306 kb on - strand, within DZA65_RS05785at 1187.306 kb on - strand, within DZA65_RS05785at 1187.306 kb on - strand, within DZA65_RS05785at 1187.306 kb on - strand, within DZA65_RS05785at 1187.306 kb on - strand, within DZA65_RS05785at 1187.306 kb on - strand, within DZA65_RS05785at 1187.329 kb on + strand, within DZA65_RS05785at 1187.352 kb on + strand, within DZA65_RS05785at 1187.352 kb on + strand, within DZA65_RS05785at 1187.352 kb on + strand, within DZA65_RS05785at 1187.352 kb on + strand, within DZA65_RS05785at 1187.353 kb on - strand, within DZA65_RS05785at 1187.353 kb on - strand, within DZA65_RS05785at 1187.395 kb on - strand, within DZA65_RS05785at 1187.395 kb on - strand, within DZA65_RS05785at 1187.395 kb on - strand, within DZA65_RS05785at 1187.494 kb on - strand, within DZA65_RS05785at 1187.521 kb on + strand, within DZA65_RS05785at 1187.521 kb on + strand, within DZA65_RS05785at 1187.522 kb on - strand, within DZA65_RS05785at 1187.522 kb on - strand, within DZA65_RS05785at 1187.655 kb on - strand, within DZA65_RS05785at 1187.713 kb on + strandat 1187.713 kb on + strand, within DZA65_RS05785at 1187.713 kb on + strand, within DZA65_RS05785at 1187.713 kb on + strand, within DZA65_RS05785at 1187.713 kb on + strand, within DZA65_RS05785at 1187.713 kb on + strand, within DZA65_RS05785at 1187.714 kb on - strand, within DZA65_RS05785at 1187.714 kb on - strand, within DZA65_RS05785at 1187.714 kb on - strand, within DZA65_RS05785at 1187.714 kb on - strand, within DZA65_RS05785at 1187.714 kb on - strand, within DZA65_RS05785at 1187.714 kb on - strandat 1187.714 kb on - strand, within DZA65_RS05785at 1187.714 kb on - strand, within DZA65_RS05785at 1187.714 kb on - strand, within DZA65_RS05785at 1187.714 kb on - strand, within DZA65_RS05785at 1187.828 kb on + strand, within DZA65_RS05785at 1187.988 kb on + strand, within DZA65_RS05785at 1187.988 kb on + strand, within DZA65_RS05785at 1187.988 kb on + strand, within DZA65_RS05785at 1187.988 kb on + strand, within DZA65_RS05785at 1187.988 kb on + strand, within DZA65_RS05785at 1187.989 kb on - strand, within DZA65_RS05785at 1188.447 kb on + strand, within DZA65_RS05785at 1188.447 kb on + strand, within DZA65_RS05785at 1188.448 kb on - strand, within DZA65_RS05785at 1188.500 kb on + strand, within DZA65_RS05785at 1188.500 kb on + strand, within DZA65_RS05785at 1188.501 kb on - strand, within DZA65_RS05785at 1188.501 kb on - strand, within DZA65_RS05785at 1188.501 kb on - strand, within DZA65_RS05785at 1188.669 kb on - strandat 1188.669 kb on - strandat 1188.748 kb on + strandat 1188.872 kb on - strandat 1189.208 kb on - strand, within DZA65_RS05790at 1189.244 kb on - strand, within DZA65_RS05790at 1189.262 kb on - strand, within DZA65_RS05790at 1189.262 kb on - strand, within DZA65_RS05790at 1189.310 kb on - strand, within DZA65_RS05790at 1189.310 kb on - strand, within DZA65_RS05790at 1189.340 kb on - strand, within DZA65_RS05790at 1189.680 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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1,186,027 + DZA65_RS05775 0.36 -0.3
1,186,027 + DZA65_RS05775 0.36 -0.2
1,186,027 + DZA65_RS05775 0.36 -0.9
1,186,028 - DZA65_RS05775 0.36 +0.2
1,186,029 + DZA65_RS05775 0.36 +0.1
1,186,030 - DZA65_RS05775 0.37 -0.7
1,186,030 - DZA65_RS05775 0.37 -0.3
1,186,030 - DZA65_RS05775 0.37 -2.1
1,186,030 - DZA65_RS05775 0.37 -0.3
1,186,064 + DZA65_RS05775 0.49 -0.3
1,186,137 + DZA65_RS05775 0.74 +0.8
1,186,189 + -1.2
1,186,189 + -0.5
1,186,190 - +1.5
1,186,190 - -1.3
1,186,202 - -0.3
1,186,219 + -1.5
1,186,272 + -0.6
1,186,272 + -0.6
1,186,272 + +0.4
1,186,273 - -0.3
1,186,273 - -1.3
1,186,275 + +0.1
1,186,275 + +0.6
1,186,276 - +0.1
1,186,294 + -0.5
1,186,295 - -1.5
1,186,297 - -0.7
1,186,297 - -0.7
1,186,315 - -0.5
1,186,316 + -1.0
1,186,316 + -0.3
1,186,317 - +1.2
1,186,317 - +0.2
1,186,334 + -1.3
1,186,335 - -0.4
1,186,336 + -0.1
1,186,337 - +0.8
1,186,337 - -0.2
1,186,337 - +0.6
1,186,337 - +0.6
1,186,407 + -2.1
1,186,407 + +0.9
1,186,408 - -0.9
1,186,429 + -0.7
1,186,439 + -0.4
1,186,493 + +1.2
1,186,497 + -0.8
1,186,497 + -2.5
1,186,497 + +0.6
1,186,498 - -1.5
1,186,498 - -0.4
1,186,511 + +0.4
1,186,525 + +0.5
1,186,525 + +0.5
1,186,525 + -1.1
1,186,585 - -0.7
1,186,585 - -0.5
1,186,585 - -0.1
1,186,707 + -0.4
1,186,718 + +1.6
1,186,718 + -1.9
1,186,719 - -0.1
1,186,719 - -1.2
1,186,719 - +0.8
1,186,719 - -0.7
1,186,733 + +0.1
1,186,791 + -1.9
1,186,833 + -0.3
1,186,848 + -3.1
1,186,848 + +1.1
1,186,848 + -1.3
1,186,849 - -1.0
1,186,849 - +0.3
1,186,849 - +0.3
1,186,849 - -0.2
1,186,855 + -0.1
1,186,855 + -0.2
1,186,855 + +0.2
1,186,855 + -1.3
1,186,855 + +0.3
1,186,855 + -0.5
1,186,856 - -0.2
1,186,856 - -1.6
1,186,856 - -1.5
1,186,856 - +0.7
1,186,856 - -1.3
1,186,881 - +0.1
1,186,899 - -2.1
1,186,923 + +0.7
1,186,924 - -0.2
1,186,928 - +0.8
1,186,928 - -0.0
1,186,928 - +0.1
1,186,945 - -0.1
1,186,948 + +0.1
1,186,948 + -0.3
1,186,957 - -0.9
1,186,957 - +1.1
1,186,959 + -0.9
1,186,959 + -0.4
1,186,959 + -0.5
1,186,960 - -0.7
1,186,965 + +0.7
1,186,965 + -0.8
1,186,965 + +1.3
1,186,965 + +0.8
1,186,966 - -0.2
1,186,966 - +0.4
1,186,966 - -1.1
1,186,966 - +0.3
1,186,989 - -0.4
1,186,989 - -0.9
1,186,998 + -0.1
1,187,025 - -0.7
1,187,028 + -0.2
1,187,028 + +0.7
1,187,029 - +0.1
1,187,029 - +0.7
1,187,062 + +0.1
1,187,062 + +1.5
1,187,062 + -0.5
1,187,063 - +0.2
1,187,063 - -1.7
1,187,063 - +1.3
1,187,063 - +0.1
1,187,063 - +0.1
1,187,063 - +1.5
1,187,064 + -0.2
1,187,064 + -0.1
1,187,065 - -0.9
1,187,082 + +0.4
1,187,157 + DZA65_RS05785 0.11 +0.5
1,187,157 + DZA65_RS05785 0.11 -1.3
1,187,157 + DZA65_RS05785 0.11 +0.3
1,187,157 + DZA65_RS05785 0.11 +0.3
1,187,157 + DZA65_RS05785 0.11 -0.5
1,187,158 - DZA65_RS05785 0.11 -0.7
1,187,158 - DZA65_RS05785 0.11 -0.3
1,187,169 + DZA65_RS05785 0.12 +0.1
1,187,245 + DZA65_RS05785 0.16 +0.2
1,187,245 + DZA65_RS05785 0.16 -0.5
1,187,245 + DZA65_RS05785 0.16 -0.5
1,187,245 + DZA65_RS05785 0.16 -0.7
1,187,245 + DZA65_RS05785 0.16 -1.7
1,187,245 + DZA65_RS05785 0.16 +1.0
1,187,245 + DZA65_RS05785 0.16 +0.2
1,187,245 + DZA65_RS05785 0.16 -0.3
1,187,245 + DZA65_RS05785 0.16 -0.2
1,187,246 - DZA65_RS05785 0.16 -0.2
1,187,246 - DZA65_RS05785 0.16 -0.6
1,187,246 - DZA65_RS05785 0.16 -0.4
1,187,246 - DZA65_RS05785 0.16 -0.5
1,187,246 - DZA65_RS05785 0.16 -0.4
1,187,246 - DZA65_RS05785 0.16 -2.7
1,187,246 - DZA65_RS05785 0.16 +0.5
1,187,246 - DZA65_RS05785 0.16 +0.3
1,187,246 - DZA65_RS05785 0.16 +1.3
1,187,246 - DZA65_RS05785 0.16 -0.1
1,187,246 - DZA65_RS05785 0.16 -0.1
1,187,246 - DZA65_RS05785 0.16 +0.1
1,187,246 - DZA65_RS05785 0.16 -0.3
1,187,246 - DZA65_RS05785 0.16 -0.3
1,187,247 + DZA65_RS05785 0.16 +0.3
1,187,254 + DZA65_RS05785 0.16 -1.2
1,187,255 - DZA65_RS05785 0.16 -1.2
1,187,305 + DZA65_RS05785 0.19 -0.1
1,187,305 + DZA65_RS05785 0.19 -0.4
1,187,305 + DZA65_RS05785 0.19 -0.2
1,187,305 + DZA65_RS05785 0.19 +0.7
1,187,305 + +1.1
1,187,306 - DZA65_RS05785 0.19 +1.9
1,187,306 - DZA65_RS05785 0.19 +1.1
1,187,306 - DZA65_RS05785 0.19 +0.1
1,187,306 - DZA65_RS05785 0.19 +0.1
1,187,306 - DZA65_RS05785 0.19 -0.5
1,187,306 - DZA65_RS05785 0.19 +1.0
1,187,306 - DZA65_RS05785 0.19 +0.6
1,187,329 + DZA65_RS05785 0.21 +0.1
1,187,352 + DZA65_RS05785 0.22 +0.3
1,187,352 + DZA65_RS05785 0.22 -0.6
1,187,352 + DZA65_RS05785 0.22 -0.6
1,187,352 + DZA65_RS05785 0.22 -1.4
1,187,353 - DZA65_RS05785 0.22 -0.5
1,187,353 - DZA65_RS05785 0.22 +0.3
1,187,395 - DZA65_RS05785 0.24 -0.6
1,187,395 - DZA65_RS05785 0.24 +2.4
1,187,395 - DZA65_RS05785 0.24 +0.2
1,187,494 - DZA65_RS05785 0.30 -0.5
1,187,521 + DZA65_RS05785 0.31 +0.3
1,187,521 + DZA65_RS05785 0.31 -0.4
1,187,522 - DZA65_RS05785 0.31 -0.2
1,187,522 - DZA65_RS05785 0.31 +0.7
1,187,655 - DZA65_RS05785 0.39 +1.2
1,187,713 + +2.1
1,187,713 + DZA65_RS05785 0.42 +0.3
1,187,713 + DZA65_RS05785 0.42 +0.2
1,187,713 + DZA65_RS05785 0.42 -0.7
1,187,713 + DZA65_RS05785 0.42 +0.5
1,187,713 + DZA65_RS05785 0.42 -0.0
1,187,714 - DZA65_RS05785 0.42 -1.0
1,187,714 - DZA65_RS05785 0.42 +1.1
1,187,714 - DZA65_RS05785 0.42 +0.3
1,187,714 - DZA65_RS05785 0.42 +0.8
1,187,714 - DZA65_RS05785 0.42 -0.4
1,187,714 - +0.1
1,187,714 - DZA65_RS05785 0.42 -0.5
1,187,714 - DZA65_RS05785 0.42 -0.0
1,187,714 - DZA65_RS05785 0.42 +0.3
1,187,714 - DZA65_RS05785 0.42 -0.1
1,187,828 + DZA65_RS05785 0.48 +0.9
1,187,988 + DZA65_RS05785 0.57 +0.5
1,187,988 + DZA65_RS05785 0.57 -0.2
1,187,988 + DZA65_RS05785 0.57 +0.7
1,187,988 + DZA65_RS05785 0.57 -0.3
1,187,988 + DZA65_RS05785 0.57 +0.2
1,187,989 - DZA65_RS05785 0.57 +0.2
1,188,447 + DZA65_RS05785 0.83 +0.6
1,188,447 + DZA65_RS05785 0.83 -2.1
1,188,448 - DZA65_RS05785 0.83 +0.1
1,188,500 + DZA65_RS05785 0.86 +0.4
1,188,500 + DZA65_RS05785 0.86 -0.7
1,188,501 - DZA65_RS05785 0.86 -0.6
1,188,501 - DZA65_RS05785 0.86 +0.3
1,188,501 - DZA65_RS05785 0.86 +1.7
1,188,669 - -0.3
1,188,669 - +0.3
1,188,748 + +1.6
1,188,872 - -0.6
1,189,208 - DZA65_RS05790 0.45 -1.5
1,189,244 - DZA65_RS05790 0.49 -0.5
1,189,262 - DZA65_RS05790 0.51 +0.4
1,189,262 - DZA65_RS05790 0.51 +0.6
1,189,310 - DZA65_RS05790 0.56 -1.0
1,189,310 - DZA65_RS05790 0.56 +0.6
1,189,340 - DZA65_RS05790 0.60 -0.9
1,189,680 + -0.1

Or see this region's nucleotide sequence