Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS04550 and DZA65_RS04555 are separated by 333 nucleotides DZA65_RS04555 and DZA65_RS04560 are separated by 98 nucleotides
DZA65_RS04550: DZA65_RS04550 - rhamnogalacturonate lyase, at 948,065 to 949,795
_RS04550
DZA65_RS04555: DZA65_RS04555 - TIGR00645 family protein, at 950,129 to 950,662
_RS04555
DZA65_RS04560: DZA65_RS04560 - molybdopterin-dependent oxidoreductase, at 950,761 to 953,022
_RS04560
Position (kb) 950
951 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 949.153 kb on - strand, within DZA65_RS04550 at 949.171 kb on - strand, within DZA65_RS04550 at 949.185 kb on + strand, within DZA65_RS04550 at 949.186 kb on - strand, within DZA65_RS04550 at 949.186 kb on - strand, within DZA65_RS04550 at 949.194 kb on + strand, within DZA65_RS04550 at 949.194 kb on + strand, within DZA65_RS04550 at 949.195 kb on - strand, within DZA65_RS04550 at 949.195 kb on - strand, within DZA65_RS04550 at 949.260 kb on + strand, within DZA65_RS04550 at 949.288 kb on + strand, within DZA65_RS04550 at 949.289 kb on - strand, within DZA65_RS04550 at 949.289 kb on - strand, within DZA65_RS04550 at 949.386 kb on + strand, within DZA65_RS04550 at 949.386 kb on + strand, within DZA65_RS04550 at 949.386 kb on + strand, within DZA65_RS04550 at 949.386 kb on + strand, within DZA65_RS04550 at 949.386 kb on + strand, within DZA65_RS04550 at 949.387 kb on - strand, within DZA65_RS04550 at 949.387 kb on - strand, within DZA65_RS04550 at 949.387 kb on - strand, within DZA65_RS04550 at 949.387 kb on - strand, within DZA65_RS04550 at 949.387 kb on - strand, within DZA65_RS04550 at 949.428 kb on + strand, within DZA65_RS04550 at 949.429 kb on - strand, within DZA65_RS04550 at 949.439 kb on + strand, within DZA65_RS04550 at 949.439 kb on + strand, within DZA65_RS04550 at 949.439 kb on + strand, within DZA65_RS04550 at 949.440 kb on - strand, within DZA65_RS04550 at 949.440 kb on - strand, within DZA65_RS04550 at 949.465 kb on - strand, within DZA65_RS04550 at 949.465 kb on - strand, within DZA65_RS04550 at 949.543 kb on - strand, within DZA65_RS04550 at 949.543 kb on - strand, within DZA65_RS04550 at 949.543 kb on - strand, within DZA65_RS04550 at 949.543 kb on - strand, within DZA65_RS04550 at 949.545 kb on + strand, within DZA65_RS04550 at 949.546 kb on - strand, within DZA65_RS04550 at 949.546 kb on - strand, within DZA65_RS04550 at 949.554 kb on + strand, within DZA65_RS04550 at 949.555 kb on - strand, within DZA65_RS04550 at 949.782 kb on - strand at 949.795 kb on + strand at 949.796 kb on - strand at 949.835 kb on + strand at 949.835 kb on + strand at 949.836 kb on - strand at 949.856 kb on + strand at 949.856 kb on + strand at 949.856 kb on + strand at 949.856 kb on + strand at 949.857 kb on - strand at 949.857 kb on - strand at 949.857 kb on - strand at 949.954 kb on + strand at 949.954 kb on + strand at 949.954 kb on + strand at 949.954 kb on + strand at 949.954 kb on + strand at 949.954 kb on + strand at 949.954 kb on + strand at 949.954 kb on + strand at 949.955 kb on - strand at 949.955 kb on - strand at 949.955 kb on - strand at 949.955 kb on - strand at 950.003 kb on + strand at 950.047 kb on - strand at 950.067 kb on - strand at 950.114 kb on + strand at 950.114 kb on + strand at 950.129 kb on - strand at 950.149 kb on + strand at 950.150 kb on - strand at 950.156 kb on + strand at 950.156 kb on + strand at 950.156 kb on + strand at 950.156 kb on + strand at 950.156 kb on + strand at 950.157 kb on - strand at 950.157 kb on - strand at 950.157 kb on - strand at 950.157 kb on - strand at 950.157 kb on - strand at 950.157 kb on - strand at 950.157 kb on - strand at 950.157 kb on - strand at 950.157 kb on - strand at 950.208 kb on + strand, within DZA65_RS04555 at 950.543 kb on + strand, within DZA65_RS04555 at 950.543 kb on + strand, within DZA65_RS04555 at 950.543 kb on + strand, within DZA65_RS04555 at 950.543 kb on + strand, within DZA65_RS04555 at 950.543 kb on + strand, within DZA65_RS04555 at 950.543 kb on + strand, within DZA65_RS04555 at 950.544 kb on - strand, within DZA65_RS04555 at 950.544 kb on - strand, within DZA65_RS04555 at 950.544 kb on - strand, within DZA65_RS04555 at 950.544 kb on - strand, within DZA65_RS04555 at 950.544 kb on - strand, within DZA65_RS04555 at 950.551 kb on - strand, within DZA65_RS04555 at 950.585 kb on - strand, within DZA65_RS04555 at 950.653 kb on + strand at 950.653 kb on + strand at 950.654 kb on - strand at 950.654 kb on - strand at 950.654 kb on - strand at 950.660 kb on + strand at 950.660 kb on + strand at 950.660 kb on + strand at 950.660 kb on + strand at 950.660 kb on + strand at 950.660 kb on + strand at 950.661 kb on - strand at 950.661 kb on - strand at 950.661 kb on - strand at 950.840 kb on - strand at 950.842 kb on + strand at 950.842 kb on + strand at 950.842 kb on + strand at 950.842 kb on + strand at 950.842 kb on + strand at 950.842 kb on + strand at 950.843 kb on - strand at 950.843 kb on - strand at 950.970 kb on - strand at 951.050 kb on + strand, within DZA65_RS04560 at 951.050 kb on + strand, within DZA65_RS04560 at 951.050 kb on + strand, within DZA65_RS04560 at 951.050 kb on + strand, within DZA65_RS04560 at 951.050 kb on + strand, within DZA65_RS04560 at 951.050 kb on + strand, within DZA65_RS04560 at 951.050 kb on + strand, within DZA65_RS04560 at 951.050 kb on + strand, within DZA65_RS04560 at 951.050 kb on + strand, within DZA65_RS04560 at 951.050 kb on + strand, within DZA65_RS04560 at 951.050 kb on + strand, within DZA65_RS04560 at 951.051 kb on - strand, within DZA65_RS04560 at 951.051 kb on - strand, within DZA65_RS04560 at 951.051 kb on - strand, within DZA65_RS04560 at 951.141 kb on + strand, within DZA65_RS04560 at 951.142 kb on - strand, within DZA65_RS04560 at 951.142 kb on - strand, within DZA65_RS04560 at 951.256 kb on + strand, within DZA65_RS04560 at 951.256 kb on + strand, within DZA65_RS04560 at 951.256 kb on + strand, within DZA65_RS04560 at 951.256 kb on + strand, within DZA65_RS04560 at 951.257 kb on - strand, within DZA65_RS04560 at 951.257 kb on - strand, within DZA65_RS04560 at 951.352 kb on - strand, within DZA65_RS04560 at 951.360 kb on - strand, within DZA65_RS04560 at 951.360 kb on - strand, within DZA65_RS04560 at 951.360 kb on - strand, within DZA65_RS04560 at 951.434 kb on + strand, within DZA65_RS04560 at 951.434 kb on + strand, within DZA65_RS04560 at 951.434 kb on + strand, within DZA65_RS04560 at 951.434 kb on + strand, within DZA65_RS04560 at 951.434 kb on + strand, within DZA65_RS04560 at 951.435 kb on - strand, within DZA65_RS04560 at 951.435 kb on - strand, within DZA65_RS04560 at 951.435 kb on - strand, within DZA65_RS04560 at 951.435 kb on - strand, within DZA65_RS04560 at 951.435 kb on - strand at 951.435 kb on - strand, within DZA65_RS04560 at 951.522 kb on + strand, within DZA65_RS04560 at 951.523 kb on - strand, within DZA65_RS04560 at 951.527 kb on + strand, within DZA65_RS04560 at 951.527 kb on + strand, within DZA65_RS04560 at 951.528 kb on - strand, within DZA65_RS04560 at 951.555 kb on + strand, within DZA65_RS04560
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 949,153 - DZA65_RS04550 0.63 -0.7 949,171 - DZA65_RS04550 0.64 -2.0 949,185 + DZA65_RS04550 0.65 -0.1 949,186 - DZA65_RS04550 0.65 -0.2 949,186 - DZA65_RS04550 0.65 +0.0 949,194 + DZA65_RS04550 0.65 -0.6 949,194 + DZA65_RS04550 0.65 -0.1 949,195 - DZA65_RS04550 0.65 +0.1 949,195 - DZA65_RS04550 0.65 -0.2 949,260 + DZA65_RS04550 0.69 -1.2 949,288 + DZA65_RS04550 0.71 -0.6 949,289 - DZA65_RS04550 0.71 +0.1 949,289 - DZA65_RS04550 0.71 -0.9 949,386 + DZA65_RS04550 0.76 -0.3 949,386 + DZA65_RS04550 0.76 -1.9 949,386 + DZA65_RS04550 0.76 -1.2 949,386 + DZA65_RS04550 0.76 -1.3 949,386 + DZA65_RS04550 0.76 -0.0 949,387 - DZA65_RS04550 0.76 -1.2 949,387 - DZA65_RS04550 0.76 -0.2 949,387 - DZA65_RS04550 0.76 -0.4 949,387 - DZA65_RS04550 0.76 +0.4 949,387 - DZA65_RS04550 0.76 -1.0 949,428 + DZA65_RS04550 0.79 -0.9 949,429 - DZA65_RS04550 0.79 -0.7 949,439 + DZA65_RS04550 0.79 +0.5 949,439 + DZA65_RS04550 0.79 -1.1 949,439 + DZA65_RS04550 0.79 +0.9 949,440 - DZA65_RS04550 0.79 -0.1 949,440 - DZA65_RS04550 0.79 +0.5 949,465 - DZA65_RS04550 0.81 -0.9 949,465 - DZA65_RS04550 0.81 -0.9 949,543 - DZA65_RS04550 0.85 -1.0 949,543 - DZA65_RS04550 0.85 -0.6 949,543 - DZA65_RS04550 0.85 -1.6 949,543 - DZA65_RS04550 0.85 -1.2 949,545 + DZA65_RS04550 0.85 -0.5 949,546 - DZA65_RS04550 0.86 -0.8 949,546 - DZA65_RS04550 0.86 -1.2 949,554 + DZA65_RS04550 0.86 +0.0 949,555 - DZA65_RS04550 0.86 -1.7 949,782 - +1.3 949,795 + -1.2 949,796 - +1.1 949,835 + +0.0 949,835 + -0.1 949,836 - +0.1 949,856 + -0.6 949,856 + +0.7 949,856 + -1.2 949,856 + -0.3 949,857 - +0.3 949,857 - +0.7 949,857 - -1.4 949,954 + +0.1 949,954 + -0.4 949,954 + -0.7 949,954 + -0.1 949,954 + -1.5 949,954 + +0.7 949,954 + +0.0 949,954 + -0.5 949,955 - -1.6 949,955 - -0.4 949,955 - +0.9 949,955 - +0.7 950,003 + -0.9 950,047 - -0.1 950,067 - +0.7 950,114 + +0.1 950,114 + -0.2 950,129 - +1.1 950,149 + -0.8 950,150 - -0.1 950,156 + -0.8 950,156 + -0.7 950,156 + -1.0 950,156 + -0.6 950,156 + -1.2 950,157 - +0.1 950,157 - -1.3 950,157 - +1.1 950,157 - -0.8 950,157 - -0.0 950,157 - -0.4 950,157 - -1.5 950,157 - -1.7 950,157 - +0.8 950,208 + DZA65_RS04555 0.15 +1.3 950,543 + DZA65_RS04555 0.78 +0.5 950,543 + DZA65_RS04555 0.78 -0.4 950,543 + DZA65_RS04555 0.78 +1.0 950,543 + DZA65_RS04555 0.78 -0.1 950,543 + DZA65_RS04555 0.78 -0.6 950,543 + DZA65_RS04555 0.78 -0.6 950,544 - DZA65_RS04555 0.78 -0.4 950,544 - DZA65_RS04555 0.78 -1.7 950,544 - DZA65_RS04555 0.78 +0.7 950,544 - DZA65_RS04555 0.78 +1.8 950,544 - DZA65_RS04555 0.78 +0.4 950,551 - DZA65_RS04555 0.79 +0.5 950,585 - DZA65_RS04555 0.85 +0.9 950,653 + -0.5 950,653 + +0.3 950,654 - +0.1 950,654 - -0.3 950,654 - -1.0 950,660 + -2.8 950,660 + -1.1 950,660 + +0.4 950,660 + -0.2 950,660 + +0.6 950,660 + -0.7 950,661 - -2.3 950,661 - +0.1 950,661 - +1.1 950,840 - -0.5 950,842 + -0.1 950,842 + -0.9 950,842 + +0.1 950,842 + -0.0 950,842 + -0.3 950,842 + -0.9 950,843 - -0.4 950,843 - -0.1 950,970 - +0.9 951,050 + DZA65_RS04560 0.13 +0.2 951,050 + DZA65_RS04560 0.13 +0.5 951,050 + DZA65_RS04560 0.13 -1.9 951,050 + DZA65_RS04560 0.13 +0.6 951,050 + DZA65_RS04560 0.13 -0.6 951,050 + DZA65_RS04560 0.13 -0.3 951,050 + DZA65_RS04560 0.13 +0.7 951,050 + DZA65_RS04560 0.13 +1.1 951,050 + DZA65_RS04560 0.13 +0.5 951,050 + DZA65_RS04560 0.13 -1.3 951,050 + DZA65_RS04560 0.13 -2.5 951,051 - DZA65_RS04560 0.13 +0.8 951,051 - DZA65_RS04560 0.13 +0.2 951,051 - DZA65_RS04560 0.13 -0.5 951,141 + DZA65_RS04560 0.17 +0.5 951,142 - DZA65_RS04560 0.17 +0.1 951,142 - DZA65_RS04560 0.17 -0.1 951,256 + DZA65_RS04560 0.22 +2.1 951,256 + DZA65_RS04560 0.22 +1.5 951,256 + DZA65_RS04560 0.22 -1.0 951,256 + DZA65_RS04560 0.22 +0.7 951,257 - DZA65_RS04560 0.22 -0.2 951,257 - DZA65_RS04560 0.22 +0.1 951,352 - DZA65_RS04560 0.26 -0.8 951,360 - DZA65_RS04560 0.26 -1.7 951,360 - DZA65_RS04560 0.26 -1.2 951,360 - DZA65_RS04560 0.26 +1.0 951,434 + DZA65_RS04560 0.30 +0.4 951,434 + DZA65_RS04560 0.30 -0.5 951,434 + DZA65_RS04560 0.30 -1.5 951,434 + DZA65_RS04560 0.30 +0.3 951,434 + DZA65_RS04560 0.30 -1.9 951,435 - DZA65_RS04560 0.30 +0.8 951,435 - DZA65_RS04560 0.30 +0.9 951,435 - DZA65_RS04560 0.30 -0.8 951,435 - DZA65_RS04560 0.30 -0.5 951,435 - +0.1 951,435 - DZA65_RS04560 0.30 +0.6 951,522 + DZA65_RS04560 0.34 +0.1 951,523 - DZA65_RS04560 0.34 -0.6 951,527 + DZA65_RS04560 0.34 -0.2 951,527 + DZA65_RS04560 0.34 +0.1 951,528 - DZA65_RS04560 0.34 -0.5 951,555 + DZA65_RS04560 0.35 -1.3
Or see this region's nucleotide sequence