Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS04445 and DZA65_RS04450 are separated by 62 nucleotides DZA65_RS04450 and DZA65_RS04455 are separated by 62 nucleotides DZA65_RS04455 and DZA65_RS04460 are separated by 2 nucleotides DZA65_RS04460 and DZA65_RS04465 overlap by 8 nucleotides
DZA65_RS04445: DZA65_RS04445 - FAD-dependent oxidoreductase, at 927,081 to 928,652
_RS04445
DZA65_RS04450: DZA65_RS04450 - FMN-binding protein, at 928,715 to 929,065
_RS04450
DZA65_RS04455: DZA65_RS04455 - MFS transporter, at 929,128 to 930,507
_RS04455
DZA65_RS04460: DZA65_RS04460 - cytochrome c nitrite reductase subunit NrfD, at 930,510 to 931,466
_RS04460
DZA65_RS04465: DZA65_RS04465 - 4Fe-4S dicluster domain-containing protein, at 931,459 to 932,157
_RS04465
Position (kb) 929
930
931 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 928.192 kb on + strand, within DZA65_RS04445 at 928.192 kb on + strand, within DZA65_RS04445 at 928.192 kb on + strand, within DZA65_RS04445 at 928.192 kb on + strand, within DZA65_RS04445 at 928.192 kb on + strand, within DZA65_RS04445 at 928.192 kb on + strand, within DZA65_RS04445 at 928.192 kb on + strand, within DZA65_RS04445 at 928.192 kb on + strand, within DZA65_RS04445 at 928.192 kb on + strand, within DZA65_RS04445 at 928.193 kb on - strand, within DZA65_RS04445 at 928.193 kb on - strand, within DZA65_RS04445 at 928.193 kb on - strand, within DZA65_RS04445 at 928.193 kb on - strand, within DZA65_RS04445 at 928.193 kb on - strand, within DZA65_RS04445 at 928.193 kb on - strand, within DZA65_RS04445 at 928.193 kb on - strand, within DZA65_RS04445 at 928.193 kb on - strand, within DZA65_RS04445 at 928.193 kb on - strand, within DZA65_RS04445 at 928.291 kb on + strand, within DZA65_RS04445 at 928.292 kb on - strand, within DZA65_RS04445 at 928.292 kb on - strand, within DZA65_RS04445 at 928.329 kb on + strand, within DZA65_RS04445 at 928.329 kb on + strand, within DZA65_RS04445 at 928.329 kb on + strand, within DZA65_RS04445 at 928.329 kb on + strand, within DZA65_RS04445 at 928.330 kb on - strand, within DZA65_RS04445 at 928.330 kb on - strand, within DZA65_RS04445 at 928.330 kb on - strand, within DZA65_RS04445 at 928.330 kb on - strand, within DZA65_RS04445 at 928.330 kb on - strand, within DZA65_RS04445 at 928.458 kb on - strand, within DZA65_RS04445 at 928.548 kb on - strand at 928.617 kb on + strand at 928.653 kb on - strand at 928.653 kb on - strand at 928.655 kb on + strand at 928.655 kb on + strand at 928.655 kb on + strand at 928.655 kb on + strand at 928.656 kb on - strand at 928.656 kb on - strand at 928.656 kb on - strand at 928.672 kb on - strand at 928.672 kb on - strand at 928.737 kb on + strand at 928.972 kb on - strand, within DZA65_RS04450 at 929.065 kb on + strand at 929.065 kb on + strand at 929.066 kb on - strand at 929.066 kb on - strand at 929.066 kb on - strand at 929.089 kb on - strand at 929.097 kb on - strand at 929.099 kb on + strand at 929.099 kb on + strand at 929.100 kb on - strand at 929.103 kb on + strand at 929.104 kb on - strand at 929.104 kb on - strand at 929.104 kb on - strand at 929.146 kb on + strand at 929.146 kb on + strand at 929.146 kb on + strand at 929.147 kb on - strand at 929.147 kb on - strand at 929.147 kb on - strand at 929.147 kb on - strand at 929.149 kb on + strand at 929.149 kb on + strand at 929.149 kb on + strand at 929.149 kb on + strand at 929.149 kb on + strand at 929.149 kb on + strand at 929.149 kb on + strand at 929.150 kb on - strand at 929.150 kb on - strand at 929.150 kb on - strand at 929.150 kb on - strand at 929.150 kb on - strand at 929.150 kb on - strand at 929.150 kb on - strand at 929.150 kb on - strand at 929.150 kb on - strand at 929.150 kb on - strand at 929.150 kb on - strand at 929.150 kb on - strand at 929.150 kb on - strand at 929.150 kb on - strand at 929.150 kb on - strand at 929.704 kb on + strand, within DZA65_RS04455 at 929.726 kb on + strand, within DZA65_RS04455 at 929.726 kb on + strand, within DZA65_RS04455 at 929.726 kb on + strand, within DZA65_RS04455 at 929.726 kb on + strand, within DZA65_RS04455 at 929.726 kb on + strand, within DZA65_RS04455 at 929.726 kb on + strand, within DZA65_RS04455 at 929.726 kb on + strand, within DZA65_RS04455 at 929.726 kb on + strand, within DZA65_RS04455 at 929.727 kb on - strand, within DZA65_RS04455 at 929.727 kb on - strand, within DZA65_RS04455 at 929.727 kb on - strand, within DZA65_RS04455 at 929.727 kb on - strand, within DZA65_RS04455 at 929.727 kb on - strand, within DZA65_RS04455 at 929.727 kb on - strand, within DZA65_RS04455 at 929.727 kb on - strand, within DZA65_RS04455 at 929.777 kb on + strand, within DZA65_RS04455 at 929.778 kb on - strand, within DZA65_RS04455 at 929.795 kb on + strand, within DZA65_RS04455 at 929.796 kb on - strand, within DZA65_RS04455 at 929.796 kb on - strand, within DZA65_RS04455 at 929.934 kb on + strand, within DZA65_RS04455 at 929.935 kb on - strand, within DZA65_RS04455 at 929.935 kb on - strand, within DZA65_RS04455 at 929.973 kb on - strand, within DZA65_RS04455 at 930.359 kb on + strand, within DZA65_RS04455 at 930.360 kb on - strand, within DZA65_RS04455 at 930.360 kb on - strand, within DZA65_RS04455 at 930.406 kb on - strand at 930.406 kb on - strand at 930.406 kb on - strand at 930.406 kb on - strand at 930.431 kb on + strand at 930.431 kb on + strand at 930.431 kb on + strand at 930.431 kb on + strand at 930.431 kb on + strand at 930.431 kb on + strand at 930.431 kb on + strand at 930.431 kb on + strand at 930.431 kb on + strand at 930.431 kb on + strand at 930.431 kb on + strand at 930.431 kb on + strand at 930.431 kb on + strand at 930.432 kb on - strand at 930.432 kb on - strand at 930.432 kb on - strand at 930.432 kb on - strand at 930.432 kb on - strand at 930.432 kb on - strand at 930.459 kb on + strand at 930.535 kb on + strand at 930.536 kb on - strand at 930.536 kb on - strand at 930.536 kb on - strand at 930.561 kb on + strand at 930.561 kb on + strand at 930.561 kb on + strand at 930.561 kb on + strand at 930.562 kb on - strand at 930.562 kb on - strand at 930.562 kb on - strand at 930.562 kb on - strand at 930.562 kb on - strand at 930.562 kb on - strand at 930.562 kb on - strand at 930.601 kb on + strand at 930.602 kb on - strand at 930.656 kb on + strand, within DZA65_RS04460 at 930.657 kb on - strand, within DZA65_RS04460 at 930.672 kb on - strand, within DZA65_RS04460 at 930.672 kb on - strand, within DZA65_RS04460 at 930.792 kb on + strand, within DZA65_RS04460 at 930.793 kb on - strand, within DZA65_RS04460 at 930.793 kb on - strand, within DZA65_RS04460 at 930.980 kb on + strand, within DZA65_RS04460 at 930.980 kb on + strand, within DZA65_RS04460 at 930.982 kb on + strand, within DZA65_RS04460 at 930.982 kb on + strand, within DZA65_RS04460 at 930.982 kb on + strand, within DZA65_RS04460 at 930.983 kb on - strand, within DZA65_RS04460 at 931.035 kb on - strand, within DZA65_RS04460 at 931.035 kb on - strand, within DZA65_RS04460 at 931.056 kb on + strand, within DZA65_RS04460 at 931.056 kb on + strand, within DZA65_RS04460 at 931.127 kb on - strand, within DZA65_RS04460 at 931.162 kb on + strand, within DZA65_RS04460 at 931.162 kb on + strand, within DZA65_RS04460 at 931.162 kb on + strand, within DZA65_RS04460 at 931.162 kb on + strand, within DZA65_RS04460 at 931.162 kb on + strand, within DZA65_RS04460 at 931.162 kb on + strand, within DZA65_RS04460 at 931.162 kb on + strand, within DZA65_RS04460 at 931.162 kb on + strand, within DZA65_RS04460 at 931.162 kb on + strand, within DZA65_RS04460 at 931.162 kb on + strand, within DZA65_RS04460 at 931.163 kb on - strand, within DZA65_RS04460 at 931.163 kb on - strand, within DZA65_RS04460 at 931.163 kb on - strand, within DZA65_RS04460 at 931.163 kb on - strand, within DZA65_RS04460 at 931.163 kb on - strand, within DZA65_RS04460 at 931.163 kb on - strand, within DZA65_RS04460 at 931.163 kb on - strand, within DZA65_RS04460 at 931.163 kb on - strand, within DZA65_RS04460 at 931.163 kb on - strand, within DZA65_RS04460 at 931.211 kb on - strand, within DZA65_RS04460 at 931.211 kb on - strand, within DZA65_RS04460 at 931.211 kb on - strand, within DZA65_RS04460 at 931.225 kb on + strand, within DZA65_RS04460 at 931.226 kb on - strand, within DZA65_RS04460 at 931.226 kb on - strand, within DZA65_RS04460 at 931.226 kb on - strand, within DZA65_RS04460 at 931.226 kb on - strand, within DZA65_RS04460 at 931.278 kb on + strand, within DZA65_RS04460 at 931.328 kb on + strand, within DZA65_RS04460 at 931.328 kb on + strand, within DZA65_RS04460 at 931.328 kb on + strand, within DZA65_RS04460 at 931.328 kb on + strand, within DZA65_RS04460 at 931.329 kb on - strand, within DZA65_RS04460 at 931.329 kb on - strand, within DZA65_RS04460 at 931.329 kb on - strand, within DZA65_RS04460 at 931.351 kb on + strand, within DZA65_RS04460 at 931.411 kb on + strand at 931.411 kb on + strand at 931.412 kb on - strand at 931.412 kb on - strand at 931.434 kb on + strand at 931.481 kb on + strand at 931.482 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 928,192 + DZA65_RS04445 0.71 +0.3 928,192 + DZA65_RS04445 0.71 -0.7 928,192 + DZA65_RS04445 0.71 -2.3 928,192 + DZA65_RS04445 0.71 -0.7 928,192 + DZA65_RS04445 0.71 +0.8 928,192 + DZA65_RS04445 0.71 -0.7 928,192 + DZA65_RS04445 0.71 -0.2 928,192 + DZA65_RS04445 0.71 +0.6 928,192 + DZA65_RS04445 0.71 -1.5 928,193 - DZA65_RS04445 0.71 -0.3 928,193 - DZA65_RS04445 0.71 -0.7 928,193 - DZA65_RS04445 0.71 -0.3 928,193 - DZA65_RS04445 0.71 -3.0 928,193 - DZA65_RS04445 0.71 +0.6 928,193 - DZA65_RS04445 0.71 -1.2 928,193 - DZA65_RS04445 0.71 -1.7 928,193 - DZA65_RS04445 0.71 -0.3 928,193 - DZA65_RS04445 0.71 -0.7 928,291 + DZA65_RS04445 0.77 -1.5 928,292 - DZA65_RS04445 0.77 -0.8 928,292 - DZA65_RS04445 0.77 -0.9 928,329 + DZA65_RS04445 0.79 -0.9 928,329 + DZA65_RS04445 0.79 +0.3 928,329 + DZA65_RS04445 0.79 -0.9 928,329 + DZA65_RS04445 0.79 -0.1 928,330 - DZA65_RS04445 0.79 -1.0 928,330 - DZA65_RS04445 0.79 -0.3 928,330 - DZA65_RS04445 0.79 -0.2 928,330 - DZA65_RS04445 0.79 -0.2 928,330 - DZA65_RS04445 0.79 +0.1 928,458 - DZA65_RS04445 0.88 -0.1 928,548 - -0.2 928,617 + -0.2 928,653 - -1.1 928,653 - -1.2 928,655 + +0.0 928,655 + +0.4 928,655 + +0.4 928,655 + -0.0 928,656 - -0.5 928,656 - +0.3 928,656 - +0.0 928,672 - -0.8 928,672 - -0.4 928,737 + -0.3 928,972 - DZA65_RS04450 0.73 +0.1 929,065 + -0.9 929,065 + -0.6 929,066 - -0.0 929,066 - -1.3 929,066 - +0.1 929,089 - -0.5 929,097 - -0.9 929,099 + +0.4 929,099 + -0.0 929,100 - +0.3 929,103 + +0.8 929,104 - -0.3 929,104 - +0.1 929,104 - +0.4 929,146 + -0.7 929,146 + +1.1 929,146 + +0.5 929,147 - +0.3 929,147 - -0.3 929,147 - -0.7 929,147 - -0.5 929,149 + -0.3 929,149 + -0.4 929,149 + -0.1 929,149 + +1.0 929,149 + -0.3 929,149 + -1.2 929,149 + -0.4 929,150 - +0.3 929,150 - +0.1 929,150 - -1.0 929,150 - -0.9 929,150 - -0.5 929,150 - +0.7 929,150 - -0.3 929,150 - +0.7 929,150 - -1.6 929,150 - +1.1 929,150 - -1.2 929,150 - -0.2 929,150 - -0.1 929,150 - +0.1 929,150 - +1.5 929,704 + DZA65_RS04455 0.42 +1.3 929,726 + DZA65_RS04455 0.43 -0.7 929,726 + DZA65_RS04455 0.43 +0.4 929,726 + DZA65_RS04455 0.43 +0.2 929,726 + DZA65_RS04455 0.43 -0.5 929,726 + DZA65_RS04455 0.43 -1.2 929,726 + DZA65_RS04455 0.43 -0.3 929,726 + DZA65_RS04455 0.43 +0.3 929,726 + DZA65_RS04455 0.43 +1.1 929,727 - DZA65_RS04455 0.43 -0.0 929,727 - DZA65_RS04455 0.43 -1.1 929,727 - DZA65_RS04455 0.43 -0.7 929,727 - DZA65_RS04455 0.43 -1.3 929,727 - DZA65_RS04455 0.43 -0.8 929,727 - DZA65_RS04455 0.43 -0.5 929,727 - DZA65_RS04455 0.43 +0.1 929,777 + DZA65_RS04455 0.47 -0.3 929,778 - DZA65_RS04455 0.47 -0.7 929,795 + DZA65_RS04455 0.48 -1.0 929,796 - DZA65_RS04455 0.48 +0.9 929,796 - DZA65_RS04455 0.48 -0.5 929,934 + DZA65_RS04455 0.58 -0.7 929,935 - DZA65_RS04455 0.58 -1.3 929,935 - DZA65_RS04455 0.58 -0.6 929,973 - DZA65_RS04455 0.61 +0.0 930,359 + DZA65_RS04455 0.89 -0.1 930,360 - DZA65_RS04455 0.89 -0.4 930,360 - DZA65_RS04455 0.89 +0.1 930,406 - -0.3 930,406 - -1.3 930,406 - -0.2 930,406 - -0.2 930,431 + +1.5 930,431 + +1.6 930,431 + +0.1 930,431 + -1.1 930,431 + -0.4 930,431 + -0.5 930,431 + -0.0 930,431 + -0.6 930,431 + +0.5 930,431 + -1.1 930,431 + -1.6 930,431 + +0.1 930,431 + +0.4 930,432 - -0.2 930,432 - -0.6 930,432 - -0.5 930,432 - -0.9 930,432 - +1.1 930,432 - -0.4 930,459 + -0.8 930,535 + +0.5 930,536 - -0.0 930,536 - -0.4 930,536 - -1.8 930,561 + +0.2 930,561 + -0.7 930,561 + +0.3 930,561 + -0.1 930,562 - +0.4 930,562 - -0.1 930,562 - -1.5 930,562 - +0.1 930,562 - -1.5 930,562 - +0.9 930,562 - -0.4 930,601 + -1.5 930,602 - -1.2 930,656 + DZA65_RS04460 0.15 +0.1 930,657 - DZA65_RS04460 0.15 -1.2 930,672 - DZA65_RS04460 0.17 -0.2 930,672 - DZA65_RS04460 0.17 +0.4 930,792 + DZA65_RS04460 0.29 -0.5 930,793 - DZA65_RS04460 0.30 -0.3 930,793 - DZA65_RS04460 0.30 -0.3 930,980 + DZA65_RS04460 0.49 -0.6 930,980 + DZA65_RS04460 0.49 +0.1 930,982 + DZA65_RS04460 0.49 -0.2 930,982 + DZA65_RS04460 0.49 -0.1 930,982 + DZA65_RS04460 0.49 +0.1 930,983 - DZA65_RS04460 0.49 -0.2 931,035 - DZA65_RS04460 0.55 -1.2 931,035 - DZA65_RS04460 0.55 -0.5 931,056 + DZA65_RS04460 0.57 -0.1 931,056 + DZA65_RS04460 0.57 -0.3 931,127 - DZA65_RS04460 0.64 -0.0 931,162 + DZA65_RS04460 0.68 -0.2 931,162 + DZA65_RS04460 0.68 -0.5 931,162 + DZA65_RS04460 0.68 -0.9 931,162 + DZA65_RS04460 0.68 +0.1 931,162 + DZA65_RS04460 0.68 -0.2 931,162 + DZA65_RS04460 0.68 +0.4 931,162 + DZA65_RS04460 0.68 -0.9 931,162 + DZA65_RS04460 0.68 +0.3 931,162 + DZA65_RS04460 0.68 -0.4 931,162 + DZA65_RS04460 0.68 -0.5 931,163 - DZA65_RS04460 0.68 +0.7 931,163 - DZA65_RS04460 0.68 -2.2 931,163 - DZA65_RS04460 0.68 -0.9 931,163 - DZA65_RS04460 0.68 -0.2 931,163 - DZA65_RS04460 0.68 -0.9 931,163 - DZA65_RS04460 0.68 -0.7 931,163 - DZA65_RS04460 0.68 +0.1 931,163 - DZA65_RS04460 0.68 -1.8 931,163 - DZA65_RS04460 0.68 -0.2 931,211 - DZA65_RS04460 0.73 +0.1 931,211 - DZA65_RS04460 0.73 +0.1 931,211 - DZA65_RS04460 0.73 +0.3 931,225 + DZA65_RS04460 0.75 -2.0 931,226 - DZA65_RS04460 0.75 +0.4 931,226 - DZA65_RS04460 0.75 -0.7 931,226 - DZA65_RS04460 0.75 -0.2 931,226 - DZA65_RS04460 0.75 -0.7 931,278 + DZA65_RS04460 0.80 -0.1 931,328 + DZA65_RS04460 0.85 -0.5 931,328 + DZA65_RS04460 0.85 -0.1 931,328 + DZA65_RS04460 0.85 -0.1 931,328 + DZA65_RS04460 0.85 +0.5 931,329 - DZA65_RS04460 0.86 -1.5 931,329 - DZA65_RS04460 0.86 -0.9 931,329 - DZA65_RS04460 0.86 -0.2 931,351 + DZA65_RS04460 0.88 -0.2 931,411 + -2.0 931,411 + -0.9 931,412 - -0.0 931,412 - +0.6 931,434 + +0.1 931,481 + +0.2 931,482 - -0.2
Or see this region's nucleotide sequence