Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS04430 and DZA65_RS04440 are separated by 249 nucleotides DZA65_RS04440 and DZA65_RS04445 are separated by 30 nucleotides DZA65_RS04445 and DZA65_RS04450 are separated by 62 nucleotides DZA65_RS04450 and DZA65_RS04455 are separated by 62 nucleotides
DZA65_RS04430: DZA65_RS04430 - multidrug/biocide efflux PACE transporter, at 925,680 to 926,147
_RS04430
DZA65_RS04440: DZA65_RS04440 - DNA oxidative demethylase AlkB, at 926,397 to 927,050
_RS04440
DZA65_RS04445: DZA65_RS04445 - FAD-dependent oxidoreductase, at 927,081 to 928,652
_RS04445
DZA65_RS04450: DZA65_RS04450 - FMN-binding protein, at 928,715 to 929,065
_RS04450
DZA65_RS04455: DZA65_RS04455 - MFS transporter, at 929,128 to 930,507
_RS04455
Position (kb) 927
928
929 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 926.082 kb on + strand, within DZA65_RS04430 at 926.082 kb on + strand, within DZA65_RS04430 at 926.082 kb on + strand, within DZA65_RS04430 at 926.082 kb on + strand, within DZA65_RS04430 at 926.082 kb on + strand, within DZA65_RS04430 at 926.082 kb on + strand, within DZA65_RS04430 at 926.082 kb on + strand, within DZA65_RS04430 at 926.083 kb on - strand, within DZA65_RS04430 at 926.083 kb on - strand, within DZA65_RS04430 at 926.083 kb on - strand, within DZA65_RS04430 at 926.083 kb on - strand, within DZA65_RS04430 at 926.083 kb on - strand, within DZA65_RS04430 at 926.146 kb on - strand at 926.180 kb on - strand at 926.310 kb on - strand at 926.325 kb on + strand at 926.359 kb on + strand at 926.359 kb on + strand at 926.359 kb on + strand at 926.360 kb on - strand at 926.360 kb on - strand at 926.360 kb on - strand at 926.570 kb on + strand, within DZA65_RS04440 at 926.570 kb on + strand, within DZA65_RS04440 at 926.570 kb on + strand at 926.571 kb on - strand, within DZA65_RS04440 at 926.571 kb on - strand, within DZA65_RS04440 at 926.571 kb on - strand, within DZA65_RS04440 at 926.571 kb on - strand, within DZA65_RS04440 at 926.571 kb on - strand, within DZA65_RS04440 at 926.571 kb on - strand, within DZA65_RS04440 at 926.571 kb on - strand, within DZA65_RS04440 at 926.571 kb on - strand, within DZA65_RS04440 at 926.571 kb on - strand, within DZA65_RS04440 at 926.637 kb on + strand, within DZA65_RS04440 at 926.638 kb on - strand, within DZA65_RS04440 at 926.958 kb on + strand, within DZA65_RS04440 at 926.958 kb on + strand, within DZA65_RS04440 at 926.959 kb on - strand, within DZA65_RS04440 at 926.959 kb on - strand, within DZA65_RS04440 at 926.961 kb on + strand, within DZA65_RS04440 at 926.961 kb on + strand, within DZA65_RS04440 at 926.962 kb on - strand, within DZA65_RS04440 at 926.962 kb on - strand, within DZA65_RS04440 at 926.962 kb on - strand, within DZA65_RS04440 at 927.026 kb on + strand at 927.027 kb on - strand at 927.027 kb on - strand at 927.027 kb on - strand at 927.082 kb on + strand at 927.103 kb on + strand at 927.103 kb on + strand at 927.104 kb on - strand at 927.181 kb on + strand at 927.181 kb on + strand at 927.181 kb on + strand at 927.181 kb on + strand at 927.181 kb on + strand at 927.182 kb on - strand at 927.182 kb on - strand at 927.193 kb on + strand at 927.193 kb on + strand at 927.193 kb on + strand at 927.193 kb on + strand at 927.193 kb on + strand at 927.194 kb on - strand at 927.194 kb on - strand at 927.223 kb on + strand at 927.223 kb on + strand at 927.223 kb on + strand at 927.223 kb on + strand at 927.224 kb on - strand at 927.328 kb on + strand, within DZA65_RS04445 at 927.359 kb on - strand, within DZA65_RS04445 at 927.359 kb on - strand, within DZA65_RS04445 at 927.359 kb on - strand, within DZA65_RS04445 at 927.365 kb on + strand, within DZA65_RS04445 at 927.365 kb on + strand, within DZA65_RS04445 at 927.366 kb on - strand, within DZA65_RS04445 at 927.582 kb on + strand, within DZA65_RS04445 at 927.583 kb on - strand, within DZA65_RS04445 at 927.583 kb on - strand, within DZA65_RS04445 at 927.637 kb on + strand, within DZA65_RS04445 at 927.637 kb on + strand, within DZA65_RS04445 at 927.637 kb on + strand, within DZA65_RS04445 at 927.637 kb on + strand, within DZA65_RS04445 at 927.637 kb on + strand, within DZA65_RS04445 at 927.637 kb on + strand, within DZA65_RS04445 at 927.638 kb on - strand, within DZA65_RS04445 at 927.638 kb on - strand, within DZA65_RS04445 at 927.638 kb on - strand, within DZA65_RS04445 at 927.638 kb on - strand, within DZA65_RS04445 at 927.638 kb on - strand, within DZA65_RS04445 at 927.638 kb on - strand, within DZA65_RS04445 at 927.686 kb on + strand, within DZA65_RS04445 at 927.686 kb on + strand, within DZA65_RS04445 at 927.687 kb on - strand, within DZA65_RS04445 at 927.687 kb on - strand, within DZA65_RS04445 at 927.687 kb on - strand, within DZA65_RS04445 at 927.739 kb on + strand, within DZA65_RS04445 at 927.740 kb on - strand, within DZA65_RS04445 at 927.740 kb on - strand, within DZA65_RS04445 at 927.810 kb on + strand, within DZA65_RS04445 at 927.810 kb on + strand, within DZA65_RS04445 at 927.810 kb on + strand, within DZA65_RS04445 at 927.810 kb on + strand, within DZA65_RS04445 at 927.810 kb on + strand, within DZA65_RS04445 at 927.810 kb on + strand, within DZA65_RS04445 at 927.810 kb on + strand, within DZA65_RS04445 at 927.810 kb on + strand, within DZA65_RS04445 at 927.810 kb on + strand, within DZA65_RS04445 at 927.810 kb on + strand at 927.811 kb on - strand, within DZA65_RS04445 at 927.811 kb on - strand, within DZA65_RS04445 at 927.811 kb on - strand, within DZA65_RS04445 at 927.811 kb on - strand, within DZA65_RS04445 at 927.811 kb on - strand, within DZA65_RS04445 at 927.811 kb on - strand, within DZA65_RS04445 at 927.811 kb on - strand, within DZA65_RS04445 at 927.811 kb on - strand, within DZA65_RS04445 at 927.811 kb on - strand, within DZA65_RS04445 at 927.811 kb on - strand, within DZA65_RS04445 at 927.811 kb on - strand, within DZA65_RS04445 at 927.811 kb on - strand, within DZA65_RS04445 at 927.811 kb on - strand, within DZA65_RS04445 at 927.811 kb on - strand, within DZA65_RS04445 at 927.811 kb on - strand, within DZA65_RS04445 at 927.813 kb on + strand, within DZA65_RS04445 at 927.813 kb on + strand, within DZA65_RS04445 at 927.814 kb on - strand, within DZA65_RS04445 at 927.814 kb on - strand, within DZA65_RS04445 at 927.916 kb on + strand, within DZA65_RS04445 at 927.916 kb on + strand, within DZA65_RS04445 at 927.916 kb on + strand, within DZA65_RS04445 at 927.917 kb on - strand, within DZA65_RS04445 at 927.917 kb on - strand, within DZA65_RS04445 at 927.917 kb on - strand, within DZA65_RS04445 at 927.917 kb on - strand, within DZA65_RS04445 at 927.917 kb on - strand, within DZA65_RS04445 at 927.917 kb on - strand, within DZA65_RS04445 at 927.961 kb on - strand, within DZA65_RS04445 at 927.974 kb on + strand, within DZA65_RS04445 at 927.975 kb on - strand, within DZA65_RS04445 at 927.975 kb on - strand, within DZA65_RS04445 at 927.975 kb on - strand, within DZA65_RS04445 at 927.981 kb on + strand, within DZA65_RS04445 at 927.982 kb on - strand, within DZA65_RS04445 at 927.982 kb on - strand, within DZA65_RS04445 at 927.982 kb on - strand, within DZA65_RS04445 at 928.076 kb on + strand, within DZA65_RS04445 at 928.077 kb on - strand, within DZA65_RS04445 at 928.077 kb on - strand, within DZA65_RS04445 at 928.077 kb on - strand, within DZA65_RS04445 at 928.192 kb on + strand, within DZA65_RS04445 at 928.192 kb on + strand, within DZA65_RS04445 at 928.192 kb on + strand, within DZA65_RS04445 at 928.192 kb on + strand, within DZA65_RS04445 at 928.192 kb on + strand, within DZA65_RS04445 at 928.192 kb on + strand, within DZA65_RS04445 at 928.192 kb on + strand, within DZA65_RS04445 at 928.192 kb on + strand, within DZA65_RS04445 at 928.192 kb on + strand, within DZA65_RS04445 at 928.193 kb on - strand, within DZA65_RS04445 at 928.193 kb on - strand, within DZA65_RS04445 at 928.193 kb on - strand, within DZA65_RS04445 at 928.193 kb on - strand, within DZA65_RS04445 at 928.193 kb on - strand, within DZA65_RS04445 at 928.193 kb on - strand, within DZA65_RS04445 at 928.193 kb on - strand, within DZA65_RS04445 at 928.193 kb on - strand, within DZA65_RS04445 at 928.193 kb on - strand, within DZA65_RS04445 at 928.291 kb on + strand, within DZA65_RS04445 at 928.292 kb on - strand, within DZA65_RS04445 at 928.292 kb on - strand, within DZA65_RS04445 at 928.329 kb on + strand, within DZA65_RS04445 at 928.329 kb on + strand, within DZA65_RS04445 at 928.329 kb on + strand, within DZA65_RS04445 at 928.329 kb on + strand, within DZA65_RS04445 at 928.330 kb on - strand, within DZA65_RS04445 at 928.330 kb on - strand, within DZA65_RS04445 at 928.330 kb on - strand, within DZA65_RS04445 at 928.330 kb on - strand, within DZA65_RS04445 at 928.330 kb on - strand, within DZA65_RS04445 at 928.458 kb on - strand, within DZA65_RS04445 at 928.548 kb on - strand at 928.617 kb on + strand at 928.653 kb on - strand at 928.653 kb on - strand at 928.655 kb on + strand at 928.655 kb on + strand at 928.655 kb on + strand at 928.655 kb on + strand at 928.656 kb on - strand at 928.656 kb on - strand at 928.656 kb on - strand at 928.672 kb on - strand at 928.672 kb on - strand at 928.737 kb on + strand at 928.972 kb on - strand, within DZA65_RS04450 at 929.065 kb on + strand at 929.065 kb on + strand at 929.066 kb on - strand at 929.066 kb on - strand at 929.066 kb on - strand at 929.089 kb on - strand at 929.097 kb on - strand at 929.099 kb on + strand at 929.099 kb on + strand at 929.100 kb on - strand at 929.103 kb on + strand at 929.104 kb on - strand at 929.104 kb on - strand at 929.104 kb on - strand at 929.146 kb on + strand at 929.146 kb on + strand at 929.146 kb on + strand at 929.147 kb on - strand at 929.147 kb on - strand at 929.147 kb on - strand at 929.147 kb on - strand at 929.149 kb on + strand at 929.149 kb on + strand at 929.149 kb on + strand at 929.149 kb on + strand at 929.149 kb on + strand at 929.149 kb on + strand at 929.149 kb on + strand at 929.150 kb on - strand at 929.150 kb on - strand at 929.150 kb on - strand at 929.150 kb on - strand at 929.150 kb on - strand at 929.150 kb on - strand at 929.150 kb on - strand at 929.150 kb on - strand at 929.150 kb on - strand at 929.150 kb on - strand at 929.150 kb on - strand at 929.150 kb on - strand at 929.150 kb on - strand at 929.150 kb on - strand at 929.150 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 926,082 + DZA65_RS04430 0.86 +1.1 926,082 + DZA65_RS04430 0.86 +0.2 926,082 + DZA65_RS04430 0.86 -0.1 926,082 + DZA65_RS04430 0.86 +1.1 926,082 + DZA65_RS04430 0.86 +0.3 926,082 + DZA65_RS04430 0.86 +0.0 926,082 + DZA65_RS04430 0.86 -1.5 926,083 - DZA65_RS04430 0.86 -0.2 926,083 - DZA65_RS04430 0.86 -0.3 926,083 - DZA65_RS04430 0.86 -1.0 926,083 - DZA65_RS04430 0.86 -1.0 926,083 - DZA65_RS04430 0.86 -0.2 926,146 - +0.7 926,180 - +0.8 926,310 - +0.1 926,325 + +0.4 926,359 + -0.1 926,359 + +0.1 926,359 + -1.8 926,360 - -0.5 926,360 - +0.2 926,360 - +1.7 926,570 + DZA65_RS04440 0.26 -1.4 926,570 + DZA65_RS04440 0.26 +0.1 926,570 + +0.9 926,571 - DZA65_RS04440 0.27 -1.2 926,571 - DZA65_RS04440 0.27 -0.8 926,571 - DZA65_RS04440 0.27 -1.7 926,571 - DZA65_RS04440 0.27 +0.4 926,571 - DZA65_RS04440 0.27 -0.4 926,571 - DZA65_RS04440 0.27 -2.0 926,571 - DZA65_RS04440 0.27 -0.3 926,571 - DZA65_RS04440 0.27 +1.1 926,571 - DZA65_RS04440 0.27 +0.3 926,637 + DZA65_RS04440 0.37 -0.0 926,638 - DZA65_RS04440 0.37 -0.1 926,958 + DZA65_RS04440 0.86 -3.2 926,958 + DZA65_RS04440 0.86 +0.3 926,959 - DZA65_RS04440 0.86 -0.4 926,959 - DZA65_RS04440 0.86 +0.4 926,961 + DZA65_RS04440 0.86 +0.4 926,961 + DZA65_RS04440 0.86 +0.1 926,962 - DZA65_RS04440 0.86 -0.3 926,962 - DZA65_RS04440 0.86 +0.6 926,962 - DZA65_RS04440 0.86 +0.4 927,026 + -1.7 927,027 - -0.3 927,027 - -0.0 927,027 - +0.9 927,082 + +0.4 927,103 + +0.1 927,103 + -0.5 927,104 - +0.5 927,181 + -0.5 927,181 + -1.0 927,181 + +0.2 927,181 + -0.7 927,181 + -0.3 927,182 - +0.1 927,182 - +0.4 927,193 + -0.9 927,193 + -0.2 927,193 + +0.1 927,193 + -0.6 927,193 + -0.3 927,194 - +0.8 927,194 - +0.4 927,223 + -1.0 927,223 + +0.5 927,223 + +0.3 927,223 + -0.7 927,224 - -0.4 927,328 + DZA65_RS04445 0.16 -0.2 927,359 - DZA65_RS04445 0.18 +1.1 927,359 - DZA65_RS04445 0.18 -1.7 927,359 - DZA65_RS04445 0.18 +1.4 927,365 + DZA65_RS04445 0.18 -1.8 927,365 + DZA65_RS04445 0.18 -1.6 927,366 - DZA65_RS04445 0.18 -0.2 927,582 + DZA65_RS04445 0.32 -0.2 927,583 - DZA65_RS04445 0.32 +0.1 927,583 - DZA65_RS04445 0.32 -0.3 927,637 + DZA65_RS04445 0.35 -1.2 927,637 + DZA65_RS04445 0.35 +2.4 927,637 + DZA65_RS04445 0.35 +0.3 927,637 + DZA65_RS04445 0.35 +0.2 927,637 + DZA65_RS04445 0.35 -0.5 927,637 + DZA65_RS04445 0.35 -1.3 927,638 - DZA65_RS04445 0.35 -0.5 927,638 - DZA65_RS04445 0.35 -0.5 927,638 - DZA65_RS04445 0.35 -0.0 927,638 - DZA65_RS04445 0.35 +0.1 927,638 - DZA65_RS04445 0.35 +1.9 927,638 - DZA65_RS04445 0.35 -0.9 927,686 + DZA65_RS04445 0.38 +0.3 927,686 + DZA65_RS04445 0.38 -0.0 927,687 - DZA65_RS04445 0.39 -0.0 927,687 - DZA65_RS04445 0.39 +0.6 927,687 - DZA65_RS04445 0.39 +0.4 927,739 + DZA65_RS04445 0.42 +0.4 927,740 - DZA65_RS04445 0.42 -0.1 927,740 - DZA65_RS04445 0.42 -1.0 927,810 + DZA65_RS04445 0.46 -0.6 927,810 + DZA65_RS04445 0.46 -0.7 927,810 + DZA65_RS04445 0.46 -0.4 927,810 + DZA65_RS04445 0.46 -0.8 927,810 + DZA65_RS04445 0.46 -0.5 927,810 + DZA65_RS04445 0.46 -2.3 927,810 + DZA65_RS04445 0.46 -0.2 927,810 + DZA65_RS04445 0.46 -0.7 927,810 + DZA65_RS04445 0.46 -0.3 927,810 + -1.5 927,811 - DZA65_RS04445 0.46 +0.5 927,811 - DZA65_RS04445 0.46 -0.9 927,811 - DZA65_RS04445 0.46 -0.3 927,811 - DZA65_RS04445 0.46 -1.1 927,811 - DZA65_RS04445 0.46 -0.9 927,811 - DZA65_RS04445 0.46 -0.1 927,811 - DZA65_RS04445 0.46 -0.7 927,811 - DZA65_RS04445 0.46 -0.3 927,811 - DZA65_RS04445 0.46 -1.1 927,811 - DZA65_RS04445 0.46 -0.9 927,811 - DZA65_RS04445 0.46 +0.6 927,811 - DZA65_RS04445 0.46 -0.2 927,811 - DZA65_RS04445 0.46 -0.2 927,811 - DZA65_RS04445 0.46 -0.9 927,811 - DZA65_RS04445 0.46 +1.3 927,813 + DZA65_RS04445 0.47 +0.1 927,813 + DZA65_RS04445 0.47 -0.6 927,814 - DZA65_RS04445 0.47 +0.2 927,814 - DZA65_RS04445 0.47 -0.5 927,916 + DZA65_RS04445 0.53 +1.1 927,916 + DZA65_RS04445 0.53 +0.8 927,916 + DZA65_RS04445 0.53 -0.7 927,917 - DZA65_RS04445 0.53 +1.1 927,917 - DZA65_RS04445 0.53 -0.5 927,917 - DZA65_RS04445 0.53 +0.4 927,917 - DZA65_RS04445 0.53 +0.4 927,917 - DZA65_RS04445 0.53 +0.1 927,917 - DZA65_RS04445 0.53 -0.7 927,961 - DZA65_RS04445 0.56 +1.1 927,974 + DZA65_RS04445 0.57 +0.3 927,975 - DZA65_RS04445 0.57 +0.4 927,975 - DZA65_RS04445 0.57 -0.9 927,975 - DZA65_RS04445 0.57 -0.6 927,981 + DZA65_RS04445 0.57 +1.1 927,982 - DZA65_RS04445 0.57 +1.5 927,982 - DZA65_RS04445 0.57 -1.1 927,982 - DZA65_RS04445 0.57 -0.3 928,076 + DZA65_RS04445 0.63 -2.0 928,077 - DZA65_RS04445 0.63 -2.1 928,077 - DZA65_RS04445 0.63 -0.5 928,077 - DZA65_RS04445 0.63 -0.5 928,192 + DZA65_RS04445 0.71 +0.3 928,192 + DZA65_RS04445 0.71 -0.7 928,192 + DZA65_RS04445 0.71 -2.3 928,192 + DZA65_RS04445 0.71 -0.7 928,192 + DZA65_RS04445 0.71 +0.8 928,192 + DZA65_RS04445 0.71 -0.7 928,192 + DZA65_RS04445 0.71 -0.2 928,192 + DZA65_RS04445 0.71 +0.6 928,192 + DZA65_RS04445 0.71 -1.5 928,193 - DZA65_RS04445 0.71 -0.3 928,193 - DZA65_RS04445 0.71 -0.7 928,193 - DZA65_RS04445 0.71 -0.3 928,193 - DZA65_RS04445 0.71 -3.0 928,193 - DZA65_RS04445 0.71 +0.6 928,193 - DZA65_RS04445 0.71 -1.2 928,193 - DZA65_RS04445 0.71 -1.7 928,193 - DZA65_RS04445 0.71 -0.3 928,193 - DZA65_RS04445 0.71 -0.7 928,291 + DZA65_RS04445 0.77 -1.5 928,292 - DZA65_RS04445 0.77 -0.8 928,292 - DZA65_RS04445 0.77 -0.9 928,329 + DZA65_RS04445 0.79 -0.9 928,329 + DZA65_RS04445 0.79 +0.3 928,329 + DZA65_RS04445 0.79 -0.9 928,329 + DZA65_RS04445 0.79 -0.1 928,330 - DZA65_RS04445 0.79 -1.0 928,330 - DZA65_RS04445 0.79 -0.3 928,330 - DZA65_RS04445 0.79 -0.2 928,330 - DZA65_RS04445 0.79 -0.2 928,330 - DZA65_RS04445 0.79 +0.1 928,458 - DZA65_RS04445 0.88 -0.1 928,548 - -0.2 928,617 + -0.2 928,653 - -1.1 928,653 - -1.2 928,655 + +0.0 928,655 + +0.4 928,655 + +0.4 928,655 + -0.0 928,656 - -0.5 928,656 - +0.3 928,656 - +0.0 928,672 - -0.8 928,672 - -0.4 928,737 + -0.3 928,972 - DZA65_RS04450 0.73 +0.1 929,065 + -0.9 929,065 + -0.6 929,066 - -0.0 929,066 - -1.3 929,066 - +0.1 929,089 - -0.5 929,097 - -0.9 929,099 + +0.4 929,099 + -0.0 929,100 - +0.3 929,103 + +0.8 929,104 - -0.3 929,104 - +0.1 929,104 - +0.4 929,146 + -0.7 929,146 + +1.1 929,146 + +0.5 929,147 - +0.3 929,147 - -0.3 929,147 - -0.7 929,147 - -0.5 929,149 + -0.3 929,149 + -0.4 929,149 + -0.1 929,149 + +1.0 929,149 + -0.3 929,149 + -1.2 929,149 + -0.4 929,150 - +0.3 929,150 - +0.1 929,150 - -1.0 929,150 - -0.9 929,150 - -0.5 929,150 - +0.7 929,150 - -0.3 929,150 - +0.7 929,150 - -1.6 929,150 - +1.1 929,150 - -1.2 929,150 - -0.2 929,150 - -0.1 929,150 - +0.1 929,150 - +1.5
Or see this region's nucleotide sequence