Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS04280 and DZA65_RS04285 are separated by 500 nucleotides DZA65_RS04285 and DZA65_RS04290 are separated by 446 nucleotides
DZA65_RS04280: DZA65_RS04280 - GNAT family acetyltransferase, at 893,174 to 893,599
_RS04280
DZA65_RS04285: DZA65_RS04285 - RpoE-regulated lipoprotein, at 894,100 to 894,708
_RS04285
DZA65_RS04290: DZA65_RS04290 - N-glycosyltransferase, at 895,155 to 896,429
_RS04290
Position (kb) 894
895 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 893.108 kb on + strand at 893.108 kb on + strand at 893.109 kb on - strand at 893.109 kb on - strand at 893.109 kb on - strand at 893.109 kb on - strand at 893.158 kb on + strand at 893.158 kb on + strand at 893.158 kb on + strand at 893.158 kb on + strand at 893.158 kb on + strand at 893.159 kb on - strand at 893.159 kb on - strand at 893.159 kb on - strand at 893.159 kb on - strand at 893.159 kb on - strand at 893.159 kb on - strand at 893.159 kb on - strand at 893.159 kb on - strand at 893.159 kb on - strand at 893.159 kb on - strand at 893.159 kb on - strand at 893.187 kb on + strand at 893.187 kb on + strand at 893.287 kb on + strand, within DZA65_RS04280 at 893.287 kb on + strand, within DZA65_RS04280 at 893.288 kb on - strand, within DZA65_RS04280 at 893.288 kb on - strand, within DZA65_RS04280 at 893.381 kb on + strand, within DZA65_RS04280 at 893.382 kb on - strand, within DZA65_RS04280 at 893.382 kb on - strand at 893.384 kb on + strand, within DZA65_RS04280 at 893.384 kb on + strand, within DZA65_RS04280 at 893.384 kb on + strand, within DZA65_RS04280 at 893.384 kb on + strand, within DZA65_RS04280 at 893.384 kb on + strand, within DZA65_RS04280 at 893.385 kb on - strand, within DZA65_RS04280 at 893.385 kb on - strand, within DZA65_RS04280 at 893.385 kb on - strand, within DZA65_RS04280 at 893.385 kb on - strand, within DZA65_RS04280 at 893.385 kb on - strand, within DZA65_RS04280 at 893.525 kb on + strand, within DZA65_RS04280 at 893.525 kb on + strand, within DZA65_RS04280 at 893.525 kb on + strand, within DZA65_RS04280 at 893.526 kb on - strand, within DZA65_RS04280 at 893.526 kb on - strand, within DZA65_RS04280 at 893.526 kb on - strand, within DZA65_RS04280 at 893.526 kb on - strand, within DZA65_RS04280 at 893.526 kb on - strand, within DZA65_RS04280 at 893.526 kb on - strand, within DZA65_RS04280 at 893.526 kb on - strand, within DZA65_RS04280 at 893.540 kb on + strand, within DZA65_RS04280 at 893.540 kb on + strand, within DZA65_RS04280 at 893.540 kb on + strand, within DZA65_RS04280 at 893.540 kb on + strand at 893.540 kb on + strand, within DZA65_RS04280 at 893.540 kb on + strand, within DZA65_RS04280 at 893.594 kb on + strand at 893.657 kb on - strand at 893.657 kb on - strand at 893.752 kb on + strand at 893.756 kb on + strand at 893.756 kb on + strand at 893.756 kb on + strand at 893.756 kb on + strand at 893.757 kb on - strand at 893.757 kb on - strand at 893.757 kb on - strand at 893.757 kb on - strand at 893.757 kb on - strand at 893.757 kb on - strand at 893.849 kb on + strand at 893.850 kb on - strand at 893.870 kb on + strand at 893.870 kb on + strand at 893.870 kb on + strand at 893.870 kb on + strand at 893.870 kb on + strand at 893.870 kb on + strand at 893.871 kb on - strand at 893.871 kb on - strand at 893.871 kb on - strand at 893.871 kb on - strand at 893.871 kb on - strand at 893.871 kb on - strand at 893.871 kb on - strand at 893.958 kb on + strand at 893.958 kb on + strand at 894.047 kb on + strand at 894.082 kb on + strand at 894.082 kb on + strand at 894.082 kb on + strand at 894.082 kb on + strand at 894.083 kb on - strand at 894.083 kb on - strand at 894.084 kb on + strand at 894.084 kb on + strand at 894.085 kb on - strand at 894.261 kb on + strand, within DZA65_RS04285 at 894.367 kb on + strand, within DZA65_RS04285 at 894.368 kb on - strand, within DZA65_RS04285 at 894.505 kb on + strand, within DZA65_RS04285 at 894.505 kb on + strand, within DZA65_RS04285 at 894.598 kb on + strand, within DZA65_RS04285 at 894.598 kb on + strand, within DZA65_RS04285 at 894.599 kb on - strand, within DZA65_RS04285 at 894.599 kb on - strand, within DZA65_RS04285 at 894.651 kb on + strand at 894.652 kb on - strand at 894.717 kb on + strand at 894.717 kb on + strand at 894.717 kb on + strand at 894.718 kb on - strand at 894.718 kb on - strand at 894.718 kb on - strand at 894.718 kb on - strand at 894.805 kb on + strand at 894.806 kb on - strand at 894.806 kb on - strand at 894.837 kb on + strand at 894.838 kb on - strand at 894.838 kb on - strand at 894.853 kb on - strand at 894.884 kb on + strand at 894.884 kb on + strand at 894.887 kb on + strand at 894.887 kb on + strand at 894.888 kb on - strand at 894.945 kb on + strand at 894.946 kb on - strand at 894.946 kb on - strand at 894.946 kb on - strand at 894.959 kb on + strand at 894.959 kb on + strand at 894.960 kb on - strand at 894.960 kb on - strand at 894.971 kb on + strand at 894.971 kb on + strand at 894.971 kb on + strand at 894.971 kb on + strand at 894.971 kb on + strand at 894.972 kb on - strand at 894.972 kb on - strand at 894.972 kb on - strand at 894.996 kb on + strand at 894.996 kb on + strand at 894.997 kb on - strand at 894.997 kb on - strand at 894.997 kb on - strand at 895.009 kb on - strand at 895.023 kb on + strand at 895.023 kb on + strand at 895.023 kb on + strand at 895.023 kb on + strand at 895.023 kb on + strand at 895.023 kb on + strand at 895.023 kb on + strand at 895.024 kb on - strand at 895.024 kb on - strand at 895.024 kb on - strand at 895.024 kb on - strand at 895.074 kb on - strand at 895.082 kb on + strand at 895.083 kb on - strand at 895.083 kb on - strand at 895.143 kb on + strand at 895.143 kb on + strand at 895.143 kb on + strand at 895.144 kb on - strand at 895.144 kb on - strand at 895.144 kb on - strand at 895.200 kb on + strand at 895.200 kb on + strand at 895.205 kb on + strand at 895.205 kb on + strand at 895.205 kb on + strand at 895.205 kb on + strand at 895.206 kb on - strand at 895.206 kb on - strand at 895.206 kb on - strand at 895.206 kb on - strand at 895.206 kb on - strand at 895.206 kb on - strand at 895.206 kb on - strand at 895.206 kb on - strand at 895.206 kb on - strand at 895.235 kb on + strand at 895.235 kb on + strand at 895.235 kb on + strand at 895.236 kb on - strand at 895.307 kb on + strand, within DZA65_RS04290 at 895.433 kb on + strand, within DZA65_RS04290 at 895.433 kb on + strand, within DZA65_RS04290 at 895.433 kb on + strand, within DZA65_RS04290 at 895.433 kb on + strand, within DZA65_RS04290 at 895.433 kb on + strand, within DZA65_RS04290 at 895.434 kb on - strand, within DZA65_RS04290 at 895.513 kb on - strand, within DZA65_RS04290 at 895.513 kb on - strand, within DZA65_RS04290
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 893,108 + +0.8 893,108 + -0.4 893,109 - -1.1 893,109 - -0.0 893,109 - +1.6 893,109 - -1.0 893,158 + -0.2 893,158 + -0.5 893,158 + +1.1 893,158 + -0.4 893,158 + +0.5 893,159 - +1.5 893,159 - +0.6 893,159 - +0.1 893,159 - -0.2 893,159 - +0.4 893,159 - -0.1 893,159 - -0.2 893,159 - -1.8 893,159 - +0.7 893,159 - -0.4 893,159 - -1.5 893,187 + -1.5 893,187 + +0.1 893,287 + DZA65_RS04280 0.27 +0.5 893,287 + DZA65_RS04280 0.27 +0.3 893,288 - DZA65_RS04280 0.27 -0.0 893,288 - DZA65_RS04280 0.27 -0.9 893,381 + DZA65_RS04280 0.49 +1.8 893,382 - DZA65_RS04280 0.49 -0.2 893,382 - +0.8 893,384 + DZA65_RS04280 0.49 +0.4 893,384 + DZA65_RS04280 0.49 -0.3 893,384 + DZA65_RS04280 0.49 -0.1 893,384 + DZA65_RS04280 0.49 -0.3 893,384 + DZA65_RS04280 0.49 +0.4 893,385 - DZA65_RS04280 0.50 -2.0 893,385 - DZA65_RS04280 0.50 -1.1 893,385 - DZA65_RS04280 0.50 +1.4 893,385 - DZA65_RS04280 0.50 +0.1 893,385 - DZA65_RS04280 0.50 -2.8 893,525 + DZA65_RS04280 0.82 +0.2 893,525 + DZA65_RS04280 0.82 +0.5 893,525 + DZA65_RS04280 0.82 +0.1 893,526 - DZA65_RS04280 0.83 -1.2 893,526 - DZA65_RS04280 0.83 -0.5 893,526 - DZA65_RS04280 0.83 +0.4 893,526 - DZA65_RS04280 0.83 +0.4 893,526 - DZA65_RS04280 0.83 +0.3 893,526 - DZA65_RS04280 0.83 +0.6 893,526 - DZA65_RS04280 0.83 -1.7 893,540 + DZA65_RS04280 0.86 +0.1 893,540 + DZA65_RS04280 0.86 +0.1 893,540 + DZA65_RS04280 0.86 +0.4 893,540 + +2.5 893,540 + DZA65_RS04280 0.86 +1.2 893,540 + DZA65_RS04280 0.86 -0.1 893,594 + -0.7 893,657 - -0.5 893,657 - -0.3 893,752 + -0.9 893,756 + -1.0 893,756 + -1.0 893,756 + +0.5 893,756 + -0.5 893,757 - -0.9 893,757 - +0.1 893,757 - -0.8 893,757 - -0.1 893,757 - +0.8 893,757 - +0.5 893,849 + +0.1 893,850 - +0.4 893,870 + -0.2 893,870 + -0.7 893,870 + +0.5 893,870 + -2.2 893,870 + +0.3 893,870 + +0.1 893,871 - +0.6 893,871 - -3.4 893,871 - +0.5 893,871 - -0.5 893,871 - -0.1 893,871 - -0.1 893,871 - +1.2 893,958 + +0.1 893,958 + -1.0 894,047 + +0.2 894,082 + +1.1 894,082 + -0.2 894,082 + +0.2 894,082 + -0.5 894,083 - -0.1 894,083 - -1.9 894,084 + -0.6 894,084 + -0.7 894,085 - -0.1 894,261 + DZA65_RS04285 0.26 -0.8 894,367 + DZA65_RS04285 0.44 +0.1 894,368 - DZA65_RS04285 0.44 +0.0 894,505 + DZA65_RS04285 0.67 +1.1 894,505 + DZA65_RS04285 0.67 +0.1 894,598 + DZA65_RS04285 0.82 -2.3 894,598 + DZA65_RS04285 0.82 +0.5 894,599 - DZA65_RS04285 0.82 +1.5 894,599 - DZA65_RS04285 0.82 +0.3 894,651 + -0.9 894,652 - -1.0 894,717 + +0.0 894,717 + +0.1 894,717 + +0.9 894,718 - -1.7 894,718 - +0.3 894,718 - -0.3 894,718 - -0.1 894,805 + +0.7 894,806 - -0.7 894,806 - -0.5 894,837 + -0.0 894,838 - -0.5 894,838 - +0.7 894,853 - -0.6 894,884 + -0.1 894,884 + -0.2 894,887 + -1.2 894,887 + +0.5 894,888 - +0.6 894,945 + +0.1 894,946 - -0.2 894,946 - -0.5 894,946 - +0.0 894,959 + +0.5 894,959 + +1.7 894,960 - -0.0 894,960 - -0.9 894,971 + -0.6 894,971 + +1.1 894,971 + -0.3 894,971 + +0.7 894,971 + -0.1 894,972 - -1.2 894,972 - -0.9 894,972 - -0.0 894,996 + +0.4 894,996 + -2.0 894,997 - +0.2 894,997 - -0.7 894,997 - +0.4 895,009 - +0.5 895,023 + +0.1 895,023 + +0.6 895,023 + +1.1 895,023 + -0.5 895,023 + -0.2 895,023 + +1.1 895,023 + -0.2 895,024 - +1.9 895,024 - +0.7 895,024 - -0.2 895,024 - +0.1 895,074 - +0.1 895,082 + +0.8 895,083 - -0.6 895,083 - +0.1 895,143 + -0.9 895,143 + -0.8 895,143 + -0.2 895,144 - -0.7 895,144 - +0.6 895,144 - +1.5 895,200 + -0.3 895,200 + -0.7 895,205 + -0.5 895,205 + -1.0 895,205 + +1.1 895,205 + -1.5 895,206 - +0.7 895,206 - +1.5 895,206 - -0.2 895,206 - -0.4 895,206 - +0.1 895,206 - -0.7 895,206 - -0.5 895,206 - +0.1 895,206 - -0.7 895,235 + -0.5 895,235 + +0.4 895,235 + -0.3 895,236 - -1.7 895,307 + DZA65_RS04290 0.12 +1.1 895,433 + DZA65_RS04290 0.22 -0.4 895,433 + DZA65_RS04290 0.22 +0.1 895,433 + DZA65_RS04290 0.22 +0.6 895,433 + DZA65_RS04290 0.22 +0.1 895,433 + DZA65_RS04290 0.22 +0.0 895,434 - DZA65_RS04290 0.22 -0.3 895,513 - DZA65_RS04290 0.28 -0.2 895,513 - DZA65_RS04290 0.28 -1.9
Or see this region's nucleotide sequence