Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS04160

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS04155 and DZA65_RS04160 overlap by 1 nucleotidesDZA65_RS04160 and DZA65_RS04165 overlap by 4 nucleotides DZA65_RS04155: DZA65_RS04155 - phage tail tape measure protein, at 870,590 to 872,554 _RS04155 DZA65_RS04160: DZA65_RS04160 - DUF2590 family protein, at 872,554 to 872,883 _RS04160 DZA65_RS04165: DZA65_RS04165 - hypothetical protein, at 872,880 to 874,064 _RS04165 Position (kb) 872 873Strain fitness (log2 ratio) -2 -1 0 1at 871.638 kb on - strand, within DZA65_RS04155at 871.638 kb on - strand, within DZA65_RS04155at 871.638 kb on - strand, within DZA65_RS04155at 871.674 kb on + strandat 871.740 kb on + strand, within DZA65_RS04155at 871.775 kb on - strand, within DZA65_RS04155at 871.799 kb on - strand, within DZA65_RS04155at 871.864 kb on + strand, within DZA65_RS04155at 871.864 kb on + strand, within DZA65_RS04155at 871.865 kb on - strand, within DZA65_RS04155at 871.874 kb on + strand, within DZA65_RS04155at 871.874 kb on + strand, within DZA65_RS04155at 871.874 kb on + strand, within DZA65_RS04155at 871.875 kb on - strand, within DZA65_RS04155at 871.875 kb on - strand, within DZA65_RS04155at 871.876 kb on + strand, within DZA65_RS04155at 871.876 kb on + strand, within DZA65_RS04155at 871.877 kb on - strand, within DZA65_RS04155at 871.912 kb on + strand, within DZA65_RS04155at 871.912 kb on + strand, within DZA65_RS04155at 871.913 kb on - strand, within DZA65_RS04155at 871.913 kb on - strand, within DZA65_RS04155at 871.913 kb on - strand, within DZA65_RS04155at 871.927 kb on - strand, within DZA65_RS04155at 871.927 kb on - strand, within DZA65_RS04155at 871.927 kb on - strand, within DZA65_RS04155at 871.927 kb on - strand, within DZA65_RS04155at 871.943 kb on - strand, within DZA65_RS04155at 872.002 kb on + strand, within DZA65_RS04155at 872.065 kb on - strand, within DZA65_RS04155at 872.065 kb on - strand, within DZA65_RS04155at 872.133 kb on + strand, within DZA65_RS04155at 872.134 kb on - strand, within DZA65_RS04155at 872.134 kb on - strand, within DZA65_RS04155at 872.134 kb on - strand, within DZA65_RS04155at 872.137 kb on + strand, within DZA65_RS04155at 872.247 kb on + strand, within DZA65_RS04155at 872.248 kb on - strand, within DZA65_RS04155at 872.400 kb on + strandat 872.400 kb on + strandat 872.401 kb on - strandat 872.459 kb on + strandat 872.460 kb on - strandat 872.569 kb on + strandat 872.587 kb on - strand, within DZA65_RS04160at 872.587 kb on - strand, within DZA65_RS04160at 872.649 kb on + strand, within DZA65_RS04160at 872.754 kb on + strand, within DZA65_RS04160at 872.845 kb on + strandat 872.845 kb on + strand, within DZA65_RS04160at 872.879 kb on + strandat 872.879 kb on + strandat 872.880 kb on - strandat 872.880 kb on - strandat 872.880 kb on - strandat 872.904 kb on + strandat 872.905 kb on - strandat 872.905 kb on - strandat 872.999 kb on + strand, within DZA65_RS04165at 872.999 kb on + strand, within DZA65_RS04165at 873.092 kb on - strand, within DZA65_RS04165at 873.101 kb on + strand, within DZA65_RS04165at 873.101 kb on + strand, within DZA65_RS04165at 873.101 kb on + strand, within DZA65_RS04165at 873.101 kb on + strand, within DZA65_RS04165at 873.101 kb on + strand, within DZA65_RS04165at 873.101 kb on + strand, within DZA65_RS04165at 873.101 kb on + strand, within DZA65_RS04165at 873.101 kb on + strand, within DZA65_RS04165at 873.101 kb on + strand, within DZA65_RS04165at 873.101 kb on + strand, within DZA65_RS04165at 873.101 kb on + strand, within DZA65_RS04165at 873.101 kb on + strand, within DZA65_RS04165at 873.101 kb on + strand, within DZA65_RS04165at 873.102 kb on - strand, within DZA65_RS04165at 873.102 kb on - strand, within DZA65_RS04165at 873.102 kb on - strand, within DZA65_RS04165at 873.102 kb on - strand, within DZA65_RS04165at 873.102 kb on - strand, within DZA65_RS04165at 873.102 kb on - strand, within DZA65_RS04165at 873.102 kb on - strand, within DZA65_RS04165at 873.102 kb on - strand, within DZA65_RS04165at 873.105 kb on + strand, within DZA65_RS04165at 873.105 kb on + strand, within DZA65_RS04165at 873.105 kb on + strand, within DZA65_RS04165at 873.105 kb on + strand, within DZA65_RS04165at 873.105 kb on + strand, within DZA65_RS04165at 873.105 kb on + strand, within DZA65_RS04165at 873.106 kb on - strand, within DZA65_RS04165at 873.106 kb on - strand, within DZA65_RS04165at 873.106 kb on - strand, within DZA65_RS04165at 873.106 kb on - strand, within DZA65_RS04165at 873.106 kb on - strand, within DZA65_RS04165at 873.106 kb on - strand, within DZA65_RS04165at 873.106 kb on - strand, within DZA65_RS04165at 873.204 kb on + strand, within DZA65_RS04165at 873.204 kb on + strand, within DZA65_RS04165at 873.204 kb on + strand, within DZA65_RS04165at 873.205 kb on - strand, within DZA65_RS04165at 873.205 kb on - strand, within DZA65_RS04165at 873.205 kb on - strand, within DZA65_RS04165at 873.206 kb on + strand, within DZA65_RS04165at 873.206 kb on + strand, within DZA65_RS04165at 873.534 kb on + strand, within DZA65_RS04165at 873.535 kb on - strand, within DZA65_RS04165at 873.645 kb on + strand, within DZA65_RS04165at 873.645 kb on + strand, within DZA65_RS04165at 873.645 kb on + strand, within DZA65_RS04165at 873.645 kb on + strand, within DZA65_RS04165at 873.645 kb on + strand, within DZA65_RS04165at 873.645 kb on + strand, within DZA65_RS04165at 873.646 kb on - strand, within DZA65_RS04165at 873.646 kb on - strand, within DZA65_RS04165at 873.646 kb on - strand, within DZA65_RS04165at 873.646 kb on - strand, within DZA65_RS04165at 873.646 kb on - strand, within DZA65_RS04165at 873.702 kb on + strand, within DZA65_RS04165at 873.702 kb on + strand, within DZA65_RS04165at 873.702 kb on + strand, within DZA65_RS04165at 873.702 kb on + strand, within DZA65_RS04165at 873.702 kb on + strand, within DZA65_RS04165at 873.703 kb on - strand, within DZA65_RS04165at 873.703 kb on - strand, within DZA65_RS04165at 873.703 kb on - strand, within DZA65_RS04165at 873.703 kb on - strand, within DZA65_RS04165at 873.703 kb on - strand, within DZA65_RS04165at 873.703 kb on - strand, within DZA65_RS04165at 873.703 kb on - strand, within DZA65_RS04165at 873.749 kb on + strand, within DZA65_RS04165at 873.749 kb on + strand, within DZA65_RS04165at 873.749 kb on + strand, within DZA65_RS04165at 873.749 kb on + strand, within DZA65_RS04165at 873.749 kb on + strand, within DZA65_RS04165at 873.750 kb on - strand, within DZA65_RS04165at 873.779 kb on - strand, within DZA65_RS04165at 873.792 kb on + strand, within DZA65_RS04165at 873.792 kb on + strand, within DZA65_RS04165at 873.793 kb on - strand, within DZA65_RS04165at 873.860 kb on - strand, within DZA65_RS04165at 873.860 kb on - strand, within DZA65_RS04165

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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871,638 - DZA65_RS04155 0.53 +1.1
871,638 - DZA65_RS04155 0.53 +1.7
871,638 - DZA65_RS04155 0.53 -0.9
871,674 + +0.6
871,740 + DZA65_RS04155 0.59 +0.0
871,775 - DZA65_RS04155 0.60 -1.9
871,799 - DZA65_RS04155 0.62 -0.1
871,864 + DZA65_RS04155 0.65 -0.1
871,864 + DZA65_RS04155 0.65 -0.6
871,865 - DZA65_RS04155 0.65 -2.0
871,874 + DZA65_RS04155 0.65 -0.6
871,874 + DZA65_RS04155 0.65 -0.0
871,874 + DZA65_RS04155 0.65 -0.1
871,875 - DZA65_RS04155 0.65 -0.2
871,875 - DZA65_RS04155 0.65 +1.5
871,876 + DZA65_RS04155 0.65 +0.6
871,876 + DZA65_RS04155 0.65 +0.0
871,877 - DZA65_RS04155 0.65 +0.3
871,912 + DZA65_RS04155 0.67 -0.7
871,912 + DZA65_RS04155 0.67 -0.1
871,913 - DZA65_RS04155 0.67 -0.0
871,913 - DZA65_RS04155 0.67 -0.9
871,913 - DZA65_RS04155 0.67 -1.1
871,927 - DZA65_RS04155 0.68 -0.7
871,927 - DZA65_RS04155 0.68 -0.8
871,927 - DZA65_RS04155 0.68 +0.1
871,927 - DZA65_RS04155 0.68 -0.2
871,943 - DZA65_RS04155 0.69 -0.4
872,002 + DZA65_RS04155 0.72 -0.0
872,065 - DZA65_RS04155 0.75 +0.4
872,065 - DZA65_RS04155 0.75 -0.8
872,133 + DZA65_RS04155 0.79 +0.7
872,134 - DZA65_RS04155 0.79 +0.4
872,134 - DZA65_RS04155 0.79 -0.3
872,134 - DZA65_RS04155 0.79 -0.1
872,137 + DZA65_RS04155 0.79 -0.5
872,247 + DZA65_RS04155 0.84 +0.3
872,248 - DZA65_RS04155 0.84 +0.7
872,400 + -0.9
872,400 + +0.2
872,401 - -1.1
872,459 + +0.3
872,460 - -0.0
872,569 + +0.3
872,587 - DZA65_RS04160 0.10 +0.1
872,587 - DZA65_RS04160 0.10 +0.6
872,649 + DZA65_RS04160 0.29 -0.9
872,754 + DZA65_RS04160 0.61 +0.4
872,845 + +1.5
872,845 + DZA65_RS04160 0.88 -1.2
872,879 + -1.9
872,879 + -1.6
872,880 - -0.3
872,880 - +0.0
872,880 - -0.4
872,904 + +0.2
872,905 - +1.1
872,905 - +1.1
872,999 + DZA65_RS04165 0.10 -0.4
872,999 + DZA65_RS04165 0.10 -0.2
873,092 - DZA65_RS04165 0.18 +0.0
873,101 + DZA65_RS04165 0.19 -1.6
873,101 + DZA65_RS04165 0.19 -0.3
873,101 + DZA65_RS04165 0.19 -0.9
873,101 + DZA65_RS04165 0.19 +0.6
873,101 + DZA65_RS04165 0.19 +1.7
873,101 + DZA65_RS04165 0.19 -0.4
873,101 + DZA65_RS04165 0.19 +0.1
873,101 + DZA65_RS04165 0.19 +0.6
873,101 + DZA65_RS04165 0.19 +0.1
873,101 + DZA65_RS04165 0.19 +0.7
873,101 + DZA65_RS04165 0.19 -0.4
873,101 + DZA65_RS04165 0.19 -0.2
873,101 + DZA65_RS04165 0.19 -0.0
873,102 - DZA65_RS04165 0.19 -0.3
873,102 - DZA65_RS04165 0.19 -0.2
873,102 - DZA65_RS04165 0.19 -0.2
873,102 - DZA65_RS04165 0.19 +0.3
873,102 - DZA65_RS04165 0.19 -0.5
873,102 - DZA65_RS04165 0.19 +0.6
873,102 - DZA65_RS04165 0.19 +0.1
873,102 - DZA65_RS04165 0.19 +0.3
873,105 + DZA65_RS04165 0.19 -0.8
873,105 + DZA65_RS04165 0.19 -0.2
873,105 + DZA65_RS04165 0.19 -1.2
873,105 + DZA65_RS04165 0.19 -0.4
873,105 + DZA65_RS04165 0.19 -0.1
873,105 + DZA65_RS04165 0.19 +0.7
873,106 - DZA65_RS04165 0.19 +0.5
873,106 - DZA65_RS04165 0.19 +0.7
873,106 - DZA65_RS04165 0.19 -1.1
873,106 - DZA65_RS04165 0.19 -0.2
873,106 - DZA65_RS04165 0.19 +0.4
873,106 - DZA65_RS04165 0.19 -0.2
873,106 - DZA65_RS04165 0.19 -0.2
873,204 + DZA65_RS04165 0.27 -0.2
873,204 + DZA65_RS04165 0.27 -0.9
873,204 + DZA65_RS04165 0.27 +0.6
873,205 - DZA65_RS04165 0.27 -0.5
873,205 - DZA65_RS04165 0.27 -1.0
873,205 - DZA65_RS04165 0.27 -0.2
873,206 + DZA65_RS04165 0.28 -0.2
873,206 + DZA65_RS04165 0.28 -1.7
873,534 + DZA65_RS04165 0.55 +1.6
873,535 - DZA65_RS04165 0.55 -0.2
873,645 + DZA65_RS04165 0.65 -0.4
873,645 + DZA65_RS04165 0.65 -1.9
873,645 + DZA65_RS04165 0.65 -0.4
873,645 + DZA65_RS04165 0.65 -0.1
873,645 + DZA65_RS04165 0.65 +0.4
873,645 + DZA65_RS04165 0.65 -0.7
873,646 - DZA65_RS04165 0.65 -0.2
873,646 - DZA65_RS04165 0.65 +0.3
873,646 - DZA65_RS04165 0.65 -1.1
873,646 - DZA65_RS04165 0.65 -1.5
873,646 - DZA65_RS04165 0.65 -0.0
873,702 + DZA65_RS04165 0.69 -0.3
873,702 + DZA65_RS04165 0.69 -0.3
873,702 + DZA65_RS04165 0.69 -0.9
873,702 + DZA65_RS04165 0.69 +0.1
873,702 + DZA65_RS04165 0.69 +0.0
873,703 - DZA65_RS04165 0.69 +1.1
873,703 - DZA65_RS04165 0.69 -0.4
873,703 - DZA65_RS04165 0.69 -0.1
873,703 - DZA65_RS04165 0.69 -1.6
873,703 - DZA65_RS04165 0.69 +0.1
873,703 - DZA65_RS04165 0.69 -0.3
873,703 - DZA65_RS04165 0.69 -0.3
873,749 + DZA65_RS04165 0.73 +1.7
873,749 + DZA65_RS04165 0.73 -0.4
873,749 + DZA65_RS04165 0.73 +0.5
873,749 + DZA65_RS04165 0.73 +0.6
873,749 + DZA65_RS04165 0.73 -0.7
873,750 - DZA65_RS04165 0.73 +0.6
873,779 - DZA65_RS04165 0.76 +0.5
873,792 + DZA65_RS04165 0.77 +0.8
873,792 + DZA65_RS04165 0.77 -1.1
873,793 - DZA65_RS04165 0.77 +0.0
873,860 - DZA65_RS04165 0.83 -0.0
873,860 - DZA65_RS04165 0.83 -0.4

Or see this region's nucleotide sequence