Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS04125 and DZA65_RS04130 overlap by 14 nucleotides DZA65_RS04130 and DZA65_RS04135 overlap by 1 nucleotides DZA65_RS04135 and DZA65_RS04145 are separated by 132 nucleotides DZA65_RS04145 and DZA65_RS04155 are separated by 187 nucleotides
DZA65_RS04125: DZA65_RS04125 - holin, at 869,023 to 869,328
_RS04125
DZA65_RS04130: DZA65_RS04130 - M15 family metallopeptidase, at 869,315 to 869,656
_RS04130
DZA65_RS04135: DZA65_RS04135 - hypothetical protein, at 869,656 to 870,012
_RS04135
DZA65_RS04145: DZA65_RS04145 - hypothetical protein, at 870,145 to 870,402
_RS04145
DZA65_RS04155: DZA65_RS04155 - phage tail tape measure protein, at 870,590 to 872,554
_RS04155
Position (kb) 870
871 Strain fitness (log2 ratio) -2
-1
0
1 at 869.322 kb on + strand at 869.322 kb on + strand at 869.322 kb on + strand at 869.323 kb on - strand at 869.323 kb on - strand at 869.323 kb on - strand at 869.323 kb on - strand at 869.323 kb on - strand at 869.340 kb on + strand at 869.340 kb on + strand at 869.340 kb on + strand at 869.340 kb on + strand at 869.340 kb on + strand at 869.340 kb on + strand at 869.341 kb on - strand at 869.341 kb on - strand at 869.341 kb on - strand at 869.341 kb on - strand at 869.341 kb on - strand at 869.341 kb on - strand at 869.341 kb on - strand at 869.341 kb on - strand at 869.341 kb on - strand at 869.345 kb on - strand at 869.415 kb on - strand, within DZA65_RS04130 at 869.415 kb on - strand, within DZA65_RS04130 at 869.479 kb on + strand, within DZA65_RS04130 at 869.480 kb on - strand, within DZA65_RS04130 at 869.480 kb on - strand, within DZA65_RS04130 at 869.525 kb on + strand, within DZA65_RS04130 at 869.546 kb on + strand, within DZA65_RS04130 at 869.546 kb on + strand, within DZA65_RS04130 at 869.547 kb on - strand, within DZA65_RS04130 at 869.547 kb on - strand, within DZA65_RS04130 at 869.547 kb on - strand, within DZA65_RS04130 at 869.547 kb on - strand, within DZA65_RS04130 at 869.547 kb on - strand, within DZA65_RS04130 at 869.547 kb on - strand, within DZA65_RS04130 at 869.547 kb on - strand, within DZA65_RS04130 at 869.564 kb on + strand, within DZA65_RS04130 at 869.602 kb on + strand, within DZA65_RS04130 at 869.602 kb on + strand, within DZA65_RS04130 at 869.630 kb on - strand at 869.630 kb on - strand at 869.649 kb on + strand at 869.650 kb on - strand at 869.667 kb on - strand at 869.667 kb on - strand at 869.798 kb on + strand, within DZA65_RS04135 at 869.799 kb on - strand, within DZA65_RS04135 at 869.853 kb on - strand, within DZA65_RS04135 at 869.868 kb on + strand, within DZA65_RS04135 at 869.869 kb on - strand, within DZA65_RS04135 at 869.869 kb on - strand, within DZA65_RS04135 at 869.869 kb on - strand, within DZA65_RS04135 at 869.904 kb on + strand, within DZA65_RS04135 at 869.905 kb on - strand, within DZA65_RS04135 at 869.941 kb on + strand, within DZA65_RS04135 at 869.941 kb on + strand, within DZA65_RS04135 at 869.942 kb on - strand, within DZA65_RS04135 at 869.942 kb on - strand, within DZA65_RS04135 at 869.975 kb on + strand, within DZA65_RS04135 at 869.975 kb on + strand, within DZA65_RS04135 at 870.024 kb on + strand at 870.112 kb on - strand at 870.156 kb on + strand at 870.161 kb on + strand at 870.198 kb on + strand, within DZA65_RS04145 at 870.209 kb on - strand, within DZA65_RS04145 at 870.223 kb on - strand, within DZA65_RS04145 at 870.243 kb on + strand, within DZA65_RS04145 at 870.244 kb on - strand, within DZA65_RS04145 at 870.244 kb on - strand, within DZA65_RS04145 at 870.265 kb on + strand, within DZA65_RS04145 at 870.265 kb on + strand, within DZA65_RS04145 at 870.265 kb on + strand, within DZA65_RS04145 at 870.345 kb on + strand, within DZA65_RS04145 at 870.368 kb on - strand, within DZA65_RS04145 at 870.465 kb on + strand at 870.470 kb on - strand at 870.524 kb on + strand at 870.524 kb on + strand at 870.525 kb on - strand at 870.525 kb on - strand at 870.539 kb on + strand at 870.545 kb on + strand at 870.545 kb on + strand at 870.546 kb on - strand at 870.578 kb on - strand at 870.578 kb on - strand at 870.612 kb on + strand at 870.612 kb on + strand at 870.613 kb on - strand at 870.613 kb on - strand at 870.613 kb on - strand at 870.613 kb on - strand at 870.613 kb on - strand at 870.613 kb on - strand at 870.625 kb on + strand at 870.626 kb on - strand at 870.626 kb on - strand at 870.727 kb on + strand at 870.727 kb on + strand at 870.727 kb on + strand at 870.728 kb on - strand at 870.739 kb on + strand at 870.739 kb on + strand at 870.739 kb on + strand at 870.739 kb on + strand at 870.739 kb on + strand at 870.739 kb on + strand at 870.739 kb on + strand at 870.740 kb on - strand at 870.740 kb on - strand at 870.740 kb on - strand at 870.740 kb on - strand at 870.740 kb on - strand at 870.740 kb on - strand at 870.745 kb on + strand at 870.746 kb on - strand at 870.839 kb on - strand, within DZA65_RS04155 at 870.839 kb on - strand, within DZA65_RS04155 at 870.890 kb on + strand, within DZA65_RS04155 at 870.890 kb on + strand, within DZA65_RS04155 at 870.890 kb on + strand, within DZA65_RS04155 at 870.890 kb on + strand, within DZA65_RS04155 at 870.890 kb on + strand, within DZA65_RS04155 at 870.890 kb on + strand, within DZA65_RS04155 at 870.890 kb on + strand, within DZA65_RS04155 at 870.890 kb on + strand, within DZA65_RS04155 at 870.890 kb on + strand, within DZA65_RS04155 at 870.891 kb on - strand, within DZA65_RS04155 at 870.891 kb on - strand, within DZA65_RS04155 at 870.891 kb on - strand, within DZA65_RS04155 at 870.891 kb on - strand, within DZA65_RS04155 at 870.891 kb on - strand, within DZA65_RS04155 at 870.891 kb on - strand, within DZA65_RS04155 at 870.891 kb on - strand, within DZA65_RS04155 at 870.891 kb on - strand, within DZA65_RS04155 at 870.891 kb on - strand, within DZA65_RS04155 at 871.070 kb on - strand, within DZA65_RS04155 at 871.109 kb on + strand, within DZA65_RS04155 at 871.109 kb on + strand, within DZA65_RS04155 at 871.109 kb on + strand, within DZA65_RS04155 at 871.109 kb on + strand, within DZA65_RS04155 at 871.109 kb on + strand, within DZA65_RS04155 at 871.109 kb on + strand, within DZA65_RS04155 at 871.110 kb on - strand, within DZA65_RS04155 at 871.110 kb on - strand, within DZA65_RS04155 at 871.110 kb on - strand, within DZA65_RS04155 at 871.111 kb on + strand, within DZA65_RS04155 at 871.111 kb on + strand, within DZA65_RS04155 at 871.111 kb on + strand, within DZA65_RS04155 at 871.111 kb on + strand, within DZA65_RS04155 at 871.111 kb on + strand at 871.111 kb on + strand, within DZA65_RS04155 at 871.112 kb on - strand, within DZA65_RS04155 at 871.112 kb on - strand, within DZA65_RS04155 at 871.112 kb on - strand, within DZA65_RS04155 at 871.112 kb on - strand, within DZA65_RS04155 at 871.112 kb on - strand, within DZA65_RS04155 at 871.112 kb on - strand, within DZA65_RS04155 at 871.117 kb on + strand, within DZA65_RS04155 at 871.118 kb on - strand, within DZA65_RS04155 at 871.147 kb on + strand, within DZA65_RS04155 at 871.187 kb on + strand, within DZA65_RS04155 at 871.187 kb on + strand, within DZA65_RS04155 at 871.187 kb on + strand, within DZA65_RS04155 at 871.187 kb on + strand, within DZA65_RS04155 at 871.187 kb on + strand, within DZA65_RS04155 at 871.188 kb on - strand, within DZA65_RS04155 at 871.188 kb on - strand, within DZA65_RS04155 at 871.188 kb on - strand, within DZA65_RS04155 at 871.188 kb on - strand, within DZA65_RS04155 at 871.188 kb on - strand, within DZA65_RS04155 at 871.188 kb on - strand, within DZA65_RS04155 at 871.230 kb on + strand, within DZA65_RS04155 at 871.230 kb on + strand, within DZA65_RS04155 at 871.230 kb on + strand, within DZA65_RS04155 at 871.230 kb on + strand, within DZA65_RS04155 at 871.231 kb on - strand, within DZA65_RS04155 at 871.231 kb on - strand, within DZA65_RS04155 at 871.231 kb on - strand, within DZA65_RS04155 at 871.242 kb on + strand, within DZA65_RS04155 at 871.242 kb on + strand, within DZA65_RS04155 at 871.242 kb on + strand, within DZA65_RS04155 at 871.242 kb on + strand, within DZA65_RS04155 at 871.242 kb on + strand, within DZA65_RS04155 at 871.243 kb on - strand, within DZA65_RS04155 at 871.243 kb on - strand, within DZA65_RS04155 at 871.243 kb on - strand, within DZA65_RS04155 at 871.243 kb on - strand, within DZA65_RS04155 at 871.265 kb on + strand, within DZA65_RS04155 at 871.266 kb on - strand, within DZA65_RS04155 at 871.341 kb on + strand, within DZA65_RS04155
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 869,322 + +0.8 869,322 + -1.7 869,322 + +0.8 869,323 - -0.4 869,323 - -0.6 869,323 - +0.2 869,323 - +0.2 869,323 - -0.3 869,340 + +1.1 869,340 + +1.1 869,340 + +0.0 869,340 + -0.9 869,340 + +0.3 869,340 + +0.1 869,341 - -2.4 869,341 - +0.4 869,341 - -0.9 869,341 - -0.1 869,341 - +0.8 869,341 - +0.8 869,341 - +1.0 869,341 - -0.5 869,341 - +1.0 869,345 - +1.1 869,415 - DZA65_RS04130 0.29 -0.4 869,415 - DZA65_RS04130 0.29 -0.8 869,479 + DZA65_RS04130 0.48 -1.1 869,480 - DZA65_RS04130 0.48 +1.5 869,480 - DZA65_RS04130 0.48 -0.4 869,525 + DZA65_RS04130 0.61 -0.2 869,546 + DZA65_RS04130 0.68 -0.1 869,546 + DZA65_RS04130 0.68 +0.1 869,547 - DZA65_RS04130 0.68 -0.5 869,547 - DZA65_RS04130 0.68 -0.2 869,547 - DZA65_RS04130 0.68 +0.3 869,547 - DZA65_RS04130 0.68 +0.7 869,547 - DZA65_RS04130 0.68 +0.5 869,547 - DZA65_RS04130 0.68 -0.3 869,547 - DZA65_RS04130 0.68 -1.3 869,564 + DZA65_RS04130 0.73 +0.1 869,602 + DZA65_RS04130 0.84 +0.1 869,602 + DZA65_RS04130 0.84 -0.7 869,630 - -1.1 869,630 - +0.0 869,649 + -0.2 869,650 - +0.1 869,667 - -1.0 869,667 - +0.6 869,798 + DZA65_RS04135 0.40 -1.3 869,799 - DZA65_RS04135 0.40 +0.4 869,853 - DZA65_RS04135 0.55 -1.4 869,868 + DZA65_RS04135 0.59 +0.4 869,869 - DZA65_RS04135 0.60 -1.0 869,869 - DZA65_RS04135 0.60 +0.1 869,869 - DZA65_RS04135 0.60 -2.3 869,904 + DZA65_RS04135 0.69 +0.1 869,905 - DZA65_RS04135 0.70 -0.9 869,941 + DZA65_RS04135 0.80 -0.7 869,941 + DZA65_RS04135 0.80 +1.0 869,942 - DZA65_RS04135 0.80 +0.0 869,942 - DZA65_RS04135 0.80 +0.3 869,975 + DZA65_RS04135 0.89 +0.0 869,975 + DZA65_RS04135 0.89 +0.4 870,024 + -0.4 870,112 - +0.6 870,156 + +0.7 870,161 + +0.0 870,198 + DZA65_RS04145 0.21 -1.1 870,209 - DZA65_RS04145 0.25 -0.7 870,223 - DZA65_RS04145 0.30 -1.3 870,243 + DZA65_RS04145 0.38 -0.2 870,244 - DZA65_RS04145 0.38 -0.2 870,244 - DZA65_RS04145 0.38 +0.3 870,265 + DZA65_RS04145 0.47 -1.0 870,265 + DZA65_RS04145 0.47 +0.1 870,265 + DZA65_RS04145 0.47 -0.0 870,345 + DZA65_RS04145 0.78 +0.1 870,368 - DZA65_RS04145 0.86 -2.4 870,465 + +1.1 870,470 - +0.6 870,524 + +1.4 870,524 + +1.7 870,525 - -1.2 870,525 - -0.0 870,539 + -0.5 870,545 + -0.2 870,545 + +0.5 870,546 - +1.0 870,578 - +0.1 870,578 - -0.9 870,612 + +0.4 870,612 + +0.7 870,613 - -0.0 870,613 - -0.1 870,613 - -1.0 870,613 - -1.2 870,613 - +0.5 870,613 - -0.4 870,625 + -0.9 870,626 - -0.4 870,626 - -1.9 870,727 + +0.1 870,727 + +0.8 870,727 + +0.4 870,728 - -0.9 870,739 + -0.5 870,739 + -0.1 870,739 + +0.3 870,739 + -1.5 870,739 + +1.4 870,739 + -0.4 870,739 + -0.2 870,740 - +1.1 870,740 - -0.2 870,740 - +1.3 870,740 - -0.2 870,740 - +0.1 870,740 - -0.4 870,745 + +0.1 870,746 - -0.1 870,839 - DZA65_RS04155 0.13 +0.5 870,839 - DZA65_RS04155 0.13 -0.1 870,890 + DZA65_RS04155 0.15 +0.3 870,890 + DZA65_RS04155 0.15 +0.1 870,890 + DZA65_RS04155 0.15 -1.0 870,890 + DZA65_RS04155 0.15 -0.7 870,890 + DZA65_RS04155 0.15 -0.2 870,890 + DZA65_RS04155 0.15 +0.3 870,890 + DZA65_RS04155 0.15 +0.1 870,890 + DZA65_RS04155 0.15 -0.4 870,890 + DZA65_RS04155 0.15 -0.4 870,891 - DZA65_RS04155 0.15 -1.0 870,891 - DZA65_RS04155 0.15 +1.1 870,891 - DZA65_RS04155 0.15 -0.1 870,891 - DZA65_RS04155 0.15 -1.8 870,891 - DZA65_RS04155 0.15 +0.6 870,891 - DZA65_RS04155 0.15 -0.5 870,891 - DZA65_RS04155 0.15 +1.1 870,891 - DZA65_RS04155 0.15 +1.1 870,891 - DZA65_RS04155 0.15 -0.4 871,070 - DZA65_RS04155 0.24 +0.4 871,109 + DZA65_RS04155 0.26 -0.7 871,109 + DZA65_RS04155 0.26 -0.2 871,109 + DZA65_RS04155 0.26 +0.4 871,109 + DZA65_RS04155 0.26 -0.6 871,109 + DZA65_RS04155 0.26 -0.7 871,109 + DZA65_RS04155 0.26 -0.9 871,110 - DZA65_RS04155 0.26 -0.7 871,110 - DZA65_RS04155 0.26 -0.9 871,110 - DZA65_RS04155 0.26 +0.1 871,111 + DZA65_RS04155 0.27 -0.4 871,111 + DZA65_RS04155 0.27 +0.5 871,111 + DZA65_RS04155 0.27 -1.3 871,111 + DZA65_RS04155 0.27 +0.2 871,111 + +1.1 871,111 + DZA65_RS04155 0.27 +1.6 871,112 - DZA65_RS04155 0.27 -0.3 871,112 - DZA65_RS04155 0.27 +0.6 871,112 - DZA65_RS04155 0.27 -0.0 871,112 - DZA65_RS04155 0.27 -0.1 871,112 - DZA65_RS04155 0.27 -0.1 871,112 - DZA65_RS04155 0.27 -0.3 871,117 + DZA65_RS04155 0.27 +0.0 871,118 - DZA65_RS04155 0.27 -1.1 871,147 + DZA65_RS04155 0.28 -0.2 871,187 + DZA65_RS04155 0.30 +0.4 871,187 + DZA65_RS04155 0.30 +0.6 871,187 + DZA65_RS04155 0.30 +1.1 871,187 + DZA65_RS04155 0.30 +0.3 871,187 + DZA65_RS04155 0.30 -1.4 871,188 - DZA65_RS04155 0.30 +0.2 871,188 - DZA65_RS04155 0.30 +0.6 871,188 - DZA65_RS04155 0.30 +1.0 871,188 - DZA65_RS04155 0.30 +0.1 871,188 - DZA65_RS04155 0.30 -0.1 871,188 - DZA65_RS04155 0.30 +0.2 871,230 + DZA65_RS04155 0.33 +0.3 871,230 + DZA65_RS04155 0.33 -0.3 871,230 + DZA65_RS04155 0.33 -0.5 871,230 + DZA65_RS04155 0.33 -0.4 871,231 - DZA65_RS04155 0.33 +0.1 871,231 - DZA65_RS04155 0.33 -0.6 871,231 - DZA65_RS04155 0.33 -1.3 871,242 + DZA65_RS04155 0.33 +0.4 871,242 + DZA65_RS04155 0.33 +0.0 871,242 + DZA65_RS04155 0.33 +0.5 871,242 + DZA65_RS04155 0.33 +0.8 871,242 + DZA65_RS04155 0.33 +0.7 871,243 - DZA65_RS04155 0.33 +0.9 871,243 - DZA65_RS04155 0.33 +1.4 871,243 - DZA65_RS04155 0.33 -0.5 871,243 - DZA65_RS04155 0.33 +0.2 871,265 + DZA65_RS04155 0.34 +0.7 871,266 - DZA65_RS04155 0.34 +0.5 871,341 + DZA65_RS04155 0.38 -0.4
Or see this region's nucleotide sequence