Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS04105 and DZA65_RS04110 overlap by 4 nucleotides DZA65_RS04110 and DZA65_RS04115 are separated by 2 nucleotides DZA65_RS04115 and DZA65_RS04120 overlap by 4 nucleotides DZA65_RS04120 and DZA65_RS04125 are separated by 8 nucleotides DZA65_RS04125 and DZA65_RS04130 overlap by 14 nucleotides
DZA65_RS04105: DZA65_RS04105 - phage tail protein, at 866,246 to 866,743
_RS04105
DZA65_RS04110: DZA65_RS04110 - hypothetical protein, at 866,740 to 867,444
_RS04110
DZA65_RS04115: DZA65_RS04115 - DUF2586 domain-containing protein, at 867,447 to 868,562
_RS04115
DZA65_RS04120: DZA65_RS04120 - DUF2597 family protein, at 868,559 to 869,014
_RS04120
DZA65_RS04125: DZA65_RS04125 - holin, at 869,023 to 869,328
_RS04125
DZA65_RS04130: DZA65_RS04130 - M15 family metallopeptidase, at 869,315 to 869,656
_RS04130
Position (kb) 867
868
869 Strain fitness (log2 ratio) -2
-1
0
1
2 at 866.466 kb on + strand, within DZA65_RS04105 at 866.501 kb on + strand, within DZA65_RS04105 at 866.501 kb on + strand, within DZA65_RS04105 at 866.501 kb on + strand, within DZA65_RS04105 at 866.502 kb on - strand, within DZA65_RS04105 at 866.502 kb on - strand, within DZA65_RS04105 at 866.502 kb on - strand, within DZA65_RS04105 at 866.502 kb on - strand, within DZA65_RS04105 at 866.502 kb on - strand, within DZA65_RS04105 at 866.502 kb on - strand, within DZA65_RS04105 at 866.783 kb on + strand at 866.783 kb on + strand at 866.783 kb on + strand at 866.783 kb on + strand at 866.784 kb on - strand at 866.784 kb on - strand at 866.784 kb on - strand at 866.784 kb on - strand at 866.784 kb on - strand at 866.834 kb on + strand, within DZA65_RS04110 at 866.835 kb on - strand, within DZA65_RS04110 at 866.835 kb on - strand, within DZA65_RS04110 at 866.835 kb on - strand, within DZA65_RS04110 at 867.016 kb on + strand, within DZA65_RS04110 at 867.017 kb on - strand, within DZA65_RS04110 at 867.021 kb on - strand, within DZA65_RS04110 at 867.021 kb on - strand at 867.021 kb on - strand, within DZA65_RS04110 at 867.076 kb on + strand, within DZA65_RS04110 at 867.076 kb on + strand, within DZA65_RS04110 at 867.275 kb on + strand, within DZA65_RS04110 at 867.275 kb on + strand, within DZA65_RS04110 at 867.276 kb on - strand, within DZA65_RS04110 at 867.285 kb on + strand, within DZA65_RS04110 at 867.286 kb on - strand, within DZA65_RS04110 at 867.286 kb on - strand, within DZA65_RS04110 at 867.286 kb on - strand, within DZA65_RS04110 at 867.286 kb on - strand, within DZA65_RS04110 at 867.286 kb on - strand, within DZA65_RS04110 at 867.323 kb on + strand, within DZA65_RS04110 at 867.323 kb on + strand, within DZA65_RS04110 at 867.323 kb on + strand, within DZA65_RS04110 at 867.323 kb on + strand, within DZA65_RS04110 at 867.324 kb on - strand, within DZA65_RS04110 at 867.324 kb on - strand, within DZA65_RS04110 at 867.324 kb on - strand, within DZA65_RS04110 at 867.324 kb on - strand, within DZA65_RS04110 at 867.324 kb on - strand, within DZA65_RS04110 at 867.324 kb on - strand, within DZA65_RS04110 at 867.324 kb on - strand, within DZA65_RS04110 at 867.324 kb on - strand, within DZA65_RS04110 at 867.369 kb on + strand, within DZA65_RS04110 at 867.487 kb on + strand at 867.487 kb on + strand at 867.487 kb on + strand at 867.487 kb on + strand at 867.487 kb on + strand at 867.488 kb on - strand at 867.488 kb on - strand at 867.488 kb on - strand at 867.488 kb on - strand at 867.488 kb on - strand at 867.488 kb on - strand at 867.488 kb on - strand at 867.528 kb on - strand at 867.891 kb on + strand, within DZA65_RS04115 at 867.891 kb on + strand, within DZA65_RS04115 at 867.891 kb on + strand, within DZA65_RS04115 at 867.891 kb on + strand, within DZA65_RS04115 at 867.892 kb on - strand, within DZA65_RS04115 at 867.892 kb on - strand, within DZA65_RS04115 at 867.892 kb on - strand, within DZA65_RS04115 at 867.892 kb on - strand, within DZA65_RS04115 at 867.892 kb on - strand, within DZA65_RS04115 at 867.892 kb on - strand, within DZA65_RS04115 at 867.895 kb on + strand, within DZA65_RS04115 at 867.895 kb on + strand, within DZA65_RS04115 at 867.909 kb on - strand, within DZA65_RS04115 at 867.913 kb on + strand, within DZA65_RS04115 at 868.051 kb on + strand, within DZA65_RS04115 at 868.076 kb on - strand, within DZA65_RS04115 at 868.076 kb on - strand, within DZA65_RS04115 at 868.141 kb on - strand, within DZA65_RS04115 at 868.158 kb on + strand, within DZA65_RS04115 at 868.168 kb on - strand, within DZA65_RS04115 at 868.176 kb on + strand, within DZA65_RS04115 at 868.177 kb on - strand, within DZA65_RS04115 at 868.177 kb on - strand, within DZA65_RS04115 at 868.179 kb on + strand, within DZA65_RS04115 at 868.179 kb on + strand, within DZA65_RS04115 at 868.179 kb on + strand, within DZA65_RS04115 at 868.180 kb on - strand, within DZA65_RS04115 at 868.180 kb on - strand, within DZA65_RS04115 at 868.180 kb on - strand, within DZA65_RS04115 at 868.180 kb on - strand, within DZA65_RS04115 at 868.222 kb on - strand, within DZA65_RS04115 at 868.316 kb on + strand, within DZA65_RS04115 at 868.317 kb on - strand, within DZA65_RS04115 at 868.317 kb on - strand, within DZA65_RS04115 at 868.347 kb on + strand, within DZA65_RS04115 at 868.348 kb on - strand, within DZA65_RS04115 at 868.480 kb on - strand at 868.480 kb on - strand at 868.493 kb on + strand at 868.494 kb on - strand at 868.497 kb on + strand at 868.497 kb on + strand at 868.497 kb on + strand at 868.498 kb on - strand at 868.498 kb on - strand at 868.498 kb on - strand at 868.498 kb on - strand at 868.498 kb on - strand at 868.498 kb on - strand at 868.538 kb on + strand at 868.538 kb on + strand at 868.538 kb on + strand at 868.538 kb on + strand at 868.538 kb on + strand at 868.539 kb on - strand at 868.539 kb on - strand at 868.539 kb on - strand at 868.539 kb on - strand at 868.640 kb on - strand, within DZA65_RS04120 at 868.728 kb on + strand, within DZA65_RS04120 at 868.728 kb on + strand, within DZA65_RS04120 at 868.728 kb on + strand, within DZA65_RS04120 at 868.728 kb on + strand, within DZA65_RS04120 at 868.728 kb on + strand, within DZA65_RS04120 at 868.728 kb on + strand, within DZA65_RS04120 at 868.728 kb on + strand, within DZA65_RS04120 at 868.728 kb on + strand, within DZA65_RS04120 at 868.728 kb on + strand, within DZA65_RS04120 at 868.728 kb on + strand, within DZA65_RS04120 at 868.728 kb on + strand, within DZA65_RS04120 at 868.728 kb on + strand, within DZA65_RS04120 at 868.728 kb on + strand, within DZA65_RS04120 at 868.728 kb on + strand, within DZA65_RS04120 at 868.728 kb on + strand, within DZA65_RS04120 at 868.729 kb on - strand, within DZA65_RS04120 at 868.729 kb on - strand, within DZA65_RS04120 at 868.729 kb on - strand, within DZA65_RS04120 at 868.729 kb on - strand, within DZA65_RS04120 at 868.729 kb on - strand, within DZA65_RS04120 at 868.729 kb on - strand, within DZA65_RS04120 at 868.729 kb on - strand at 868.729 kb on - strand, within DZA65_RS04120 at 868.729 kb on - strand, within DZA65_RS04120 at 868.729 kb on - strand, within DZA65_RS04120 at 868.729 kb on - strand, within DZA65_RS04120 at 868.729 kb on - strand, within DZA65_RS04120 at 868.729 kb on - strand, within DZA65_RS04120 at 868.729 kb on - strand, within DZA65_RS04120 at 868.729 kb on - strand, within DZA65_RS04120 at 868.729 kb on - strand, within DZA65_RS04120 at 868.732 kb on + strand, within DZA65_RS04120 at 868.732 kb on + strand, within DZA65_RS04120 at 868.732 kb on + strand, within DZA65_RS04120 at 868.732 kb on + strand, within DZA65_RS04120 at 868.733 kb on - strand, within DZA65_RS04120 at 868.733 kb on - strand, within DZA65_RS04120 at 868.814 kb on + strand, within DZA65_RS04120 at 868.815 kb on - strand, within DZA65_RS04120 at 868.927 kb on + strand, within DZA65_RS04120 at 868.927 kb on + strand, within DZA65_RS04120 at 868.927 kb on + strand, within DZA65_RS04120 at 868.927 kb on + strand, within DZA65_RS04120 at 868.928 kb on - strand, within DZA65_RS04120 at 868.928 kb on - strand, within DZA65_RS04120 at 868.928 kb on - strand, within DZA65_RS04120 at 868.928 kb on - strand, within DZA65_RS04120 at 869.054 kb on + strand, within DZA65_RS04125 at 869.322 kb on + strand at 869.322 kb on + strand at 869.322 kb on + strand at 869.323 kb on - strand at 869.323 kb on - strand at 869.323 kb on - strand at 869.323 kb on - strand at 869.323 kb on - strand at 869.340 kb on + strand at 869.340 kb on + strand at 869.340 kb on + strand at 869.340 kb on + strand at 869.340 kb on + strand at 869.340 kb on + strand at 869.341 kb on - strand at 869.341 kb on - strand at 869.341 kb on - strand at 869.341 kb on - strand at 869.341 kb on - strand at 869.341 kb on - strand at 869.341 kb on - strand at 869.341 kb on - strand at 869.341 kb on - strand at 869.345 kb on - strand at 869.415 kb on - strand, within DZA65_RS04130 at 869.415 kb on - strand, within DZA65_RS04130 at 869.479 kb on + strand, within DZA65_RS04130 at 869.480 kb on - strand, within DZA65_RS04130 at 869.480 kb on - strand, within DZA65_RS04130 at 869.525 kb on + strand, within DZA65_RS04130 at 869.546 kb on + strand, within DZA65_RS04130 at 869.546 kb on + strand, within DZA65_RS04130 at 869.547 kb on - strand, within DZA65_RS04130 at 869.547 kb on - strand, within DZA65_RS04130 at 869.547 kb on - strand, within DZA65_RS04130 at 869.547 kb on - strand, within DZA65_RS04130 at 869.547 kb on - strand, within DZA65_RS04130 at 869.547 kb on - strand, within DZA65_RS04130 at 869.547 kb on - strand, within DZA65_RS04130
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 866,466 + DZA65_RS04105 0.44 -0.9 866,501 + DZA65_RS04105 0.51 -1.9 866,501 + DZA65_RS04105 0.51 +0.0 866,501 + DZA65_RS04105 0.51 -0.9 866,502 - DZA65_RS04105 0.51 +1.0 866,502 - DZA65_RS04105 0.51 +0.1 866,502 - DZA65_RS04105 0.51 +0.4 866,502 - DZA65_RS04105 0.51 -1.0 866,502 - DZA65_RS04105 0.51 -0.2 866,502 - DZA65_RS04105 0.51 +0.6 866,783 + +0.4 866,783 + +0.3 866,783 + +0.3 866,783 + -1.0 866,784 - +0.4 866,784 - -0.4 866,784 - +0.8 866,784 - -0.7 866,784 - -0.3 866,834 + DZA65_RS04110 0.13 -1.2 866,835 - DZA65_RS04110 0.13 -0.9 866,835 - DZA65_RS04110 0.13 -0.7 866,835 - DZA65_RS04110 0.13 +0.1 867,016 + DZA65_RS04110 0.39 -1.0 867,017 - DZA65_RS04110 0.39 -0.5 867,021 - DZA65_RS04110 0.40 +0.3 867,021 - -0.1 867,021 - DZA65_RS04110 0.40 -1.2 867,076 + DZA65_RS04110 0.48 -0.9 867,076 + DZA65_RS04110 0.48 -0.2 867,275 + DZA65_RS04110 0.76 -1.0 867,275 + DZA65_RS04110 0.76 -1.3 867,276 - DZA65_RS04110 0.76 +0.2 867,285 + DZA65_RS04110 0.77 -0.1 867,286 - DZA65_RS04110 0.77 +0.1 867,286 - DZA65_RS04110 0.77 -0.9 867,286 - DZA65_RS04110 0.77 +0.3 867,286 - DZA65_RS04110 0.77 +0.3 867,286 - DZA65_RS04110 0.77 -0.0 867,323 + DZA65_RS04110 0.83 -0.6 867,323 + DZA65_RS04110 0.83 +1.1 867,323 + DZA65_RS04110 0.83 +0.7 867,323 + DZA65_RS04110 0.83 -0.4 867,324 - DZA65_RS04110 0.83 +1.7 867,324 - DZA65_RS04110 0.83 -1.2 867,324 - DZA65_RS04110 0.83 +0.4 867,324 - DZA65_RS04110 0.83 +0.2 867,324 - DZA65_RS04110 0.83 +0.4 867,324 - DZA65_RS04110 0.83 -0.1 867,324 - DZA65_RS04110 0.83 +1.4 867,324 - DZA65_RS04110 0.83 +0.1 867,369 + DZA65_RS04110 0.89 -0.4 867,487 + -0.6 867,487 + -0.6 867,487 + +0.2 867,487 + +0.1 867,487 + -0.9 867,488 - +0.1 867,488 - +0.9 867,488 - -0.7 867,488 - -0.3 867,488 - -0.4 867,488 - -1.9 867,488 - -0.6 867,528 - +0.9 867,891 + DZA65_RS04115 0.40 -0.6 867,891 + DZA65_RS04115 0.40 -0.5 867,891 + DZA65_RS04115 0.40 -0.2 867,891 + DZA65_RS04115 0.40 -0.0 867,892 - DZA65_RS04115 0.40 -0.4 867,892 - DZA65_RS04115 0.40 -1.7 867,892 - DZA65_RS04115 0.40 +0.6 867,892 - DZA65_RS04115 0.40 -0.9 867,892 - DZA65_RS04115 0.40 -1.0 867,892 - DZA65_RS04115 0.40 -0.1 867,895 + DZA65_RS04115 0.40 +0.5 867,895 + DZA65_RS04115 0.40 -0.6 867,909 - DZA65_RS04115 0.41 +0.4 867,913 + DZA65_RS04115 0.42 -1.1 868,051 + DZA65_RS04115 0.54 -0.4 868,076 - DZA65_RS04115 0.56 +1.5 868,076 - DZA65_RS04115 0.56 -0.1 868,141 - DZA65_RS04115 0.62 -2.2 868,158 + DZA65_RS04115 0.64 -0.8 868,168 - DZA65_RS04115 0.65 -1.7 868,176 + DZA65_RS04115 0.65 -0.9 868,177 - DZA65_RS04115 0.65 -0.3 868,177 - DZA65_RS04115 0.65 -1.3 868,179 + DZA65_RS04115 0.66 -1.5 868,179 + DZA65_RS04115 0.66 -0.9 868,179 + DZA65_RS04115 0.66 +0.8 868,180 - DZA65_RS04115 0.66 +0.4 868,180 - DZA65_RS04115 0.66 +1.1 868,180 - DZA65_RS04115 0.66 -1.3 868,180 - DZA65_RS04115 0.66 -1.3 868,222 - DZA65_RS04115 0.69 -1.7 868,316 + DZA65_RS04115 0.78 +0.1 868,317 - DZA65_RS04115 0.78 +0.1 868,317 - DZA65_RS04115 0.78 +0.6 868,347 + DZA65_RS04115 0.81 -0.1 868,348 - DZA65_RS04115 0.81 -0.4 868,480 - -0.4 868,480 - +0.1 868,493 + +0.6 868,494 - +0.3 868,497 + -2.3 868,497 + -0.1 868,497 + -1.9 868,498 - +1.1 868,498 - -0.1 868,498 - -1.6 868,498 - +0.1 868,498 - -0.5 868,498 - -0.9 868,538 + +0.6 868,538 + -1.3 868,538 + -0.4 868,538 + +0.8 868,538 + -1.8 868,539 - +0.1 868,539 - +2.4 868,539 - -1.4 868,539 - -0.4 868,640 - DZA65_RS04120 0.18 -0.3 868,728 + DZA65_RS04120 0.37 +0.9 868,728 + DZA65_RS04120 0.37 -0.4 868,728 + DZA65_RS04120 0.37 +0.6 868,728 + DZA65_RS04120 0.37 -0.4 868,728 + DZA65_RS04120 0.37 +0.6 868,728 + DZA65_RS04120 0.37 -0.7 868,728 + DZA65_RS04120 0.37 -0.1 868,728 + DZA65_RS04120 0.37 -1.1 868,728 + DZA65_RS04120 0.37 -0.3 868,728 + DZA65_RS04120 0.37 -0.7 868,728 + DZA65_RS04120 0.37 -0.6 868,728 + DZA65_RS04120 0.37 -0.4 868,728 + DZA65_RS04120 0.37 -0.1 868,728 + DZA65_RS04120 0.37 -1.0 868,728 + DZA65_RS04120 0.37 +0.5 868,729 - DZA65_RS04120 0.37 -0.4 868,729 - DZA65_RS04120 0.37 +0.4 868,729 - DZA65_RS04120 0.37 -1.3 868,729 - DZA65_RS04120 0.37 +0.6 868,729 - DZA65_RS04120 0.37 +0.8 868,729 - DZA65_RS04120 0.37 -1.1 868,729 - +0.4 868,729 - DZA65_RS04120 0.37 +0.0 868,729 - DZA65_RS04120 0.37 -0.0 868,729 - DZA65_RS04120 0.37 +0.0 868,729 - DZA65_RS04120 0.37 -0.8 868,729 - DZA65_RS04120 0.37 +2.1 868,729 - DZA65_RS04120 0.37 +0.3 868,729 - DZA65_RS04120 0.37 +0.1 868,729 - DZA65_RS04120 0.37 +0.6 868,729 - DZA65_RS04120 0.37 -0.2 868,732 + DZA65_RS04120 0.38 +0.7 868,732 + DZA65_RS04120 0.38 -0.4 868,732 + DZA65_RS04120 0.38 -1.3 868,732 + DZA65_RS04120 0.38 -1.9 868,733 - DZA65_RS04120 0.38 -1.0 868,733 - DZA65_RS04120 0.38 +1.7 868,814 + DZA65_RS04120 0.56 +0.1 868,815 - DZA65_RS04120 0.56 -2.2 868,927 + DZA65_RS04120 0.81 -0.4 868,927 + DZA65_RS04120 0.81 +0.8 868,927 + DZA65_RS04120 0.81 -1.4 868,927 + DZA65_RS04120 0.81 +0.9 868,928 - DZA65_RS04120 0.81 +0.8 868,928 - DZA65_RS04120 0.81 -1.4 868,928 - DZA65_RS04120 0.81 -1.4 868,928 - DZA65_RS04120 0.81 +0.5 869,054 + DZA65_RS04125 0.10 +1.4 869,322 + +0.8 869,322 + -1.7 869,322 + +0.8 869,323 - -0.4 869,323 - -0.6 869,323 - +0.2 869,323 - +0.2 869,323 - -0.3 869,340 + +1.1 869,340 + +1.1 869,340 + +0.0 869,340 + -0.9 869,340 + +0.3 869,340 + +0.1 869,341 - -2.4 869,341 - +0.4 869,341 - -0.9 869,341 - -0.1 869,341 - +0.8 869,341 - +0.8 869,341 - +1.0 869,341 - -0.5 869,341 - +1.0 869,345 - +1.1 869,415 - DZA65_RS04130 0.29 -0.4 869,415 - DZA65_RS04130 0.29 -0.8 869,479 + DZA65_RS04130 0.48 -1.1 869,480 - DZA65_RS04130 0.48 +1.5 869,480 - DZA65_RS04130 0.48 -0.4 869,525 + DZA65_RS04130 0.61 -0.2 869,546 + DZA65_RS04130 0.68 -0.1 869,546 + DZA65_RS04130 0.68 +0.1 869,547 - DZA65_RS04130 0.68 -0.5 869,547 - DZA65_RS04130 0.68 -0.2 869,547 - DZA65_RS04130 0.68 +0.3 869,547 - DZA65_RS04130 0.68 +0.7 869,547 - DZA65_RS04130 0.68 +0.5 869,547 - DZA65_RS04130 0.68 -0.3 869,547 - DZA65_RS04130 0.68 -1.3
Or see this region's nucleotide sequence