Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS04080 and DZA65_RS04085 are separated by 156 nucleotides DZA65_RS04085 and DZA65_RS04090 are separated by 54 nucleotides
DZA65_RS04080: DZA65_RS04080 - hypothetical protein, at 861,144 to 862,919
_RS04080
DZA65_RS04085: DZA65_RS04085 - phage capsid scaffolding protein, at 863,076 to 863,912
_RS04085
DZA65_RS04090: DZA65_RS04090 - phage major capsid protein, P2 family, at 863,967 to 864,995
_RS04090
Position (kb) 863
864 Strain fitness (log2 ratio) -2
-1
0
1 at 862.150 kb on + strand, within DZA65_RS04080 at 862.150 kb on + strand, within DZA65_RS04080 at 862.162 kb on + strand, within DZA65_RS04080 at 862.162 kb on + strand, within DZA65_RS04080 at 862.162 kb on + strand, within DZA65_RS04080 at 862.162 kb on + strand, within DZA65_RS04080 at 862.163 kb on - strand, within DZA65_RS04080 at 862.177 kb on + strand, within DZA65_RS04080 at 862.178 kb on - strand, within DZA65_RS04080 at 862.178 kb on - strand, within DZA65_RS04080 at 862.178 kb on - strand, within DZA65_RS04080 at 862.206 kb on + strand, within DZA65_RS04080 at 862.229 kb on + strand at 862.229 kb on + strand, within DZA65_RS04080 at 862.233 kb on + strand, within DZA65_RS04080 at 862.234 kb on - strand, within DZA65_RS04080 at 862.270 kb on + strand, within DZA65_RS04080 at 862.270 kb on + strand, within DZA65_RS04080 at 862.270 kb on + strand, within DZA65_RS04080 at 862.271 kb on - strand, within DZA65_RS04080 at 862.271 kb on - strand, within DZA65_RS04080 at 862.294 kb on + strand, within DZA65_RS04080 at 862.294 kb on + strand, within DZA65_RS04080 at 862.294 kb on + strand, within DZA65_RS04080 at 862.295 kb on - strand, within DZA65_RS04080 at 862.295 kb on - strand, within DZA65_RS04080 at 862.295 kb on - strand, within DZA65_RS04080 at 862.295 kb on - strand, within DZA65_RS04080 at 862.295 kb on - strand, within DZA65_RS04080 at 862.295 kb on - strand, within DZA65_RS04080 at 862.445 kb on + strand, within DZA65_RS04080 at 862.445 kb on + strand, within DZA65_RS04080 at 862.446 kb on - strand at 862.446 kb on - strand, within DZA65_RS04080 at 862.449 kb on - strand, within DZA65_RS04080 at 862.757 kb on + strand at 862.773 kb on + strand at 862.773 kb on + strand at 862.804 kb on + strand at 862.805 kb on - strand at 862.805 kb on - strand at 862.807 kb on + strand at 862.808 kb on - strand at 862.808 kb on - strand at 862.811 kb on + strand at 862.833 kb on + strand at 862.834 kb on - strand at 862.869 kb on + strand at 862.870 kb on - strand at 862.874 kb on - strand at 862.897 kb on - strand at 862.944 kb on + strand at 862.950 kb on - strand at 863.033 kb on - strand at 863.042 kb on + strand at 863.042 kb on + strand at 863.069 kb on + strand at 863.073 kb on + strand at 863.073 kb on + strand at 863.073 kb on + strand at 863.073 kb on + strand at 863.074 kb on - strand at 863.074 kb on - strand at 863.074 kb on - strand at 863.074 kb on - strand at 863.074 kb on - strand at 863.074 kb on - strand at 863.074 kb on - strand at 863.074 kb on - strand at 863.074 kb on - strand at 863.087 kb on - strand at 863.087 kb on - strand at 863.094 kb on - strand at 863.132 kb on + strand at 863.133 kb on - strand at 863.179 kb on - strand, within DZA65_RS04085 at 863.179 kb on - strand, within DZA65_RS04085 at 863.193 kb on + strand, within DZA65_RS04085 at 863.193 kb on + strand, within DZA65_RS04085 at 863.193 kb on + strand, within DZA65_RS04085 at 863.194 kb on - strand, within DZA65_RS04085 at 863.194 kb on - strand, within DZA65_RS04085 at 863.194 kb on - strand, within DZA65_RS04085 at 863.248 kb on + strand, within DZA65_RS04085 at 863.248 kb on + strand at 863.257 kb on + strand, within DZA65_RS04085 at 863.257 kb on + strand, within DZA65_RS04085 at 863.258 kb on - strand, within DZA65_RS04085 at 863.258 kb on - strand, within DZA65_RS04085 at 863.258 kb on - strand at 863.258 kb on - strand, within DZA65_RS04085 at 863.305 kb on + strand, within DZA65_RS04085 at 863.305 kb on + strand, within DZA65_RS04085 at 863.323 kb on + strand, within DZA65_RS04085 at 863.324 kb on - strand, within DZA65_RS04085 at 863.324 kb on - strand, within DZA65_RS04085 at 863.324 kb on - strand, within DZA65_RS04085 at 863.350 kb on + strand, within DZA65_RS04085 at 863.372 kb on - strand, within DZA65_RS04085 at 863.409 kb on + strand, within DZA65_RS04085 at 863.410 kb on - strand, within DZA65_RS04085 at 863.464 kb on + strand, within DZA65_RS04085 at 863.475 kb on - strand, within DZA65_RS04085 at 863.475 kb on - strand, within DZA65_RS04085 at 863.475 kb on - strand, within DZA65_RS04085 at 863.506 kb on + strand, within DZA65_RS04085 at 863.507 kb on - strand, within DZA65_RS04085 at 863.530 kb on + strand, within DZA65_RS04085 at 863.531 kb on - strand, within DZA65_RS04085 at 863.549 kb on + strand, within DZA65_RS04085 at 863.549 kb on + strand, within DZA65_RS04085 at 863.549 kb on + strand, within DZA65_RS04085 at 863.549 kb on + strand, within DZA65_RS04085 at 863.549 kb on + strand, within DZA65_RS04085 at 863.550 kb on - strand, within DZA65_RS04085 at 863.550 kb on - strand, within DZA65_RS04085 at 863.562 kb on - strand, within DZA65_RS04085 at 863.562 kb on - strand, within DZA65_RS04085 at 863.573 kb on + strand, within DZA65_RS04085 at 863.574 kb on - strand, within DZA65_RS04085 at 863.574 kb on - strand, within DZA65_RS04085 at 863.588 kb on + strand, within DZA65_RS04085 at 863.589 kb on - strand, within DZA65_RS04085 at 863.589 kb on - strand, within DZA65_RS04085 at 863.646 kb on - strand, within DZA65_RS04085 at 863.693 kb on - strand, within DZA65_RS04085 at 863.753 kb on + strand, within DZA65_RS04085 at 863.808 kb on - strand, within DZA65_RS04085 at 863.852 kb on + strand at 863.853 kb on - strand at 863.859 kb on - strand at 863.910 kb on + strand at 863.910 kb on + strand at 863.911 kb on - strand at 863.911 kb on - strand at 863.943 kb on - strand at 863.966 kb on + strand at 863.966 kb on + strand at 863.967 kb on - strand at 863.967 kb on - strand at 863.975 kb on - strand at 863.994 kb on + strand at 864.007 kb on - strand at 864.007 kb on - strand at 864.252 kb on + strand, within DZA65_RS04090 at 864.252 kb on + strand, within DZA65_RS04090 at 864.252 kb on + strand, within DZA65_RS04090 at 864.252 kb on + strand, within DZA65_RS04090 at 864.253 kb on - strand, within DZA65_RS04090 at 864.253 kb on - strand, within DZA65_RS04090 at 864.253 kb on - strand, within DZA65_RS04090 at 864.253 kb on - strand, within DZA65_RS04090 at 864.254 kb on + strand, within DZA65_RS04090 at 864.254 kb on + strand, within DZA65_RS04090 at 864.254 kb on + strand, within DZA65_RS04090 at 864.255 kb on - strand, within DZA65_RS04090 at 864.255 kb on - strand, within DZA65_RS04090 at 864.255 kb on - strand, within DZA65_RS04090 at 864.255 kb on - strand, within DZA65_RS04090 at 864.255 kb on - strand, within DZA65_RS04090 at 864.255 kb on - strand, within DZA65_RS04090 at 864.383 kb on + strand, within DZA65_RS04090 at 864.512 kb on + strand, within DZA65_RS04090 at 864.513 kb on - strand, within DZA65_RS04090 at 864.529 kb on + strand at 864.549 kb on + strand, within DZA65_RS04090 at 864.550 kb on - strand, within DZA65_RS04090 at 864.666 kb on + strand, within DZA65_RS04090 at 864.765 kb on - strand, within DZA65_RS04090 at 864.765 kb on - strand, within DZA65_RS04090 at 864.779 kb on + strand, within DZA65_RS04090 at 864.779 kb on + strand at 864.780 kb on - strand, within DZA65_RS04090 at 864.809 kb on + strand, within DZA65_RS04090 at 864.809 kb on + strand, within DZA65_RS04090 at 864.809 kb on + strand, within DZA65_RS04090 at 864.809 kb on + strand, within DZA65_RS04090 at 864.809 kb on + strand, within DZA65_RS04090 at 864.809 kb on + strand, within DZA65_RS04090 at 864.809 kb on + strand, within DZA65_RS04090 at 864.810 kb on - strand, within DZA65_RS04090 at 864.810 kb on - strand, within DZA65_RS04090 at 864.810 kb on - strand, within DZA65_RS04090 at 864.813 kb on + strand, within DZA65_RS04090 at 864.813 kb on + strand, within DZA65_RS04090 at 864.813 kb on + strand, within DZA65_RS04090 at 864.814 kb on - strand, within DZA65_RS04090 at 864.814 kb on - strand, within DZA65_RS04090 at 864.824 kb on + strand, within DZA65_RS04090 at 864.825 kb on - strand, within DZA65_RS04090 at 864.825 kb on - strand, within DZA65_RS04090 at 864.825 kb on - strand, within DZA65_RS04090 at 864.825 kb on - strand, within DZA65_RS04090 at 864.883 kb on - strand, within DZA65_RS04090
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 862,150 + DZA65_RS04080 0.57 -0.9 862,150 + DZA65_RS04080 0.57 -1.0 862,162 + DZA65_RS04080 0.57 +1.3 862,162 + DZA65_RS04080 0.57 -0.4 862,162 + DZA65_RS04080 0.57 +0.4 862,162 + DZA65_RS04080 0.57 -0.8 862,163 - DZA65_RS04080 0.57 -0.2 862,177 + DZA65_RS04080 0.58 -0.4 862,178 - DZA65_RS04080 0.58 -0.3 862,178 - DZA65_RS04080 0.58 +0.4 862,178 - DZA65_RS04080 0.58 -0.0 862,206 + DZA65_RS04080 0.60 -0.6 862,229 + -0.9 862,229 + DZA65_RS04080 0.61 -1.1 862,233 + DZA65_RS04080 0.61 -0.1 862,234 - DZA65_RS04080 0.61 -1.2 862,270 + DZA65_RS04080 0.63 +0.7 862,270 + DZA65_RS04080 0.63 -1.2 862,270 + DZA65_RS04080 0.63 -0.6 862,271 - DZA65_RS04080 0.63 +0.7 862,271 - DZA65_RS04080 0.63 -1.3 862,294 + DZA65_RS04080 0.65 -0.0 862,294 + DZA65_RS04080 0.65 +0.5 862,294 + DZA65_RS04080 0.65 +0.3 862,295 - DZA65_RS04080 0.65 -1.4 862,295 - DZA65_RS04080 0.65 +0.1 862,295 - DZA65_RS04080 0.65 -1.0 862,295 - DZA65_RS04080 0.65 -0.5 862,295 - DZA65_RS04080 0.65 +0.8 862,295 - DZA65_RS04080 0.65 -0.2 862,445 + DZA65_RS04080 0.73 -0.0 862,445 + DZA65_RS04080 0.73 -0.5 862,446 - +0.1 862,446 - DZA65_RS04080 0.73 +0.4 862,449 - DZA65_RS04080 0.73 -0.9 862,757 + -1.0 862,773 + -0.3 862,773 + +0.0 862,804 + +0.9 862,805 - -1.0 862,805 - +0.2 862,807 + +0.1 862,808 - -0.6 862,808 - -0.6 862,811 + -1.2 862,833 + -0.3 862,834 - -1.9 862,869 + -0.4 862,870 - -0.6 862,874 - +1.1 862,897 - +0.5 862,944 + +0.4 862,950 - +0.7 863,033 - -0.3 863,042 + +0.1 863,042 + +0.8 863,069 + +0.4 863,073 + -0.1 863,073 + +0.3 863,073 + +0.6 863,073 + +1.3 863,074 - +1.0 863,074 - +0.4 863,074 - -0.1 863,074 - -1.2 863,074 - -0.4 863,074 - -0.3 863,074 - -1.1 863,074 - +0.4 863,074 - +1.0 863,087 - -0.4 863,087 - +0.1 863,094 - -1.9 863,132 + +0.7 863,133 - -0.0 863,179 - DZA65_RS04085 0.12 -0.0 863,179 - DZA65_RS04085 0.12 +0.7 863,193 + DZA65_RS04085 0.14 -0.1 863,193 + DZA65_RS04085 0.14 +0.4 863,193 + DZA65_RS04085 0.14 -0.6 863,194 - DZA65_RS04085 0.14 +1.1 863,194 - DZA65_RS04085 0.14 +0.1 863,194 - DZA65_RS04085 0.14 +0.3 863,248 + DZA65_RS04085 0.21 -2.2 863,248 + +0.4 863,257 + DZA65_RS04085 0.22 +0.9 863,257 + DZA65_RS04085 0.22 -1.6 863,258 - DZA65_RS04085 0.22 -0.0 863,258 - DZA65_RS04085 0.22 -0.7 863,258 - +0.1 863,258 - DZA65_RS04085 0.22 -0.7 863,305 + DZA65_RS04085 0.27 -0.3 863,305 + DZA65_RS04085 0.27 -0.4 863,323 + DZA65_RS04085 0.30 -0.2 863,324 - DZA65_RS04085 0.30 -1.9 863,324 - DZA65_RS04085 0.30 +0.4 863,324 - DZA65_RS04085 0.30 +0.1 863,350 + DZA65_RS04085 0.33 -2.2 863,372 - DZA65_RS04085 0.35 +0.3 863,409 + DZA65_RS04085 0.40 -0.6 863,410 - DZA65_RS04085 0.40 -0.1 863,464 + DZA65_RS04085 0.46 -0.8 863,475 - DZA65_RS04085 0.48 -0.4 863,475 - DZA65_RS04085 0.48 -1.2 863,475 - DZA65_RS04085 0.48 -1.9 863,506 + DZA65_RS04085 0.51 -0.5 863,507 - DZA65_RS04085 0.51 -0.7 863,530 + DZA65_RS04085 0.54 -0.9 863,531 - DZA65_RS04085 0.54 -0.1 863,549 + DZA65_RS04085 0.57 -0.5 863,549 + DZA65_RS04085 0.57 -0.3 863,549 + DZA65_RS04085 0.57 -0.9 863,549 + DZA65_RS04085 0.57 +0.7 863,549 + DZA65_RS04085 0.57 -0.3 863,550 - DZA65_RS04085 0.57 -2.2 863,550 - DZA65_RS04085 0.57 -1.1 863,562 - DZA65_RS04085 0.58 -0.6 863,562 - DZA65_RS04085 0.58 +0.1 863,573 + DZA65_RS04085 0.59 -1.7 863,574 - DZA65_RS04085 0.59 +0.1 863,574 - DZA65_RS04085 0.59 +0.4 863,588 + DZA65_RS04085 0.61 +1.1 863,589 - DZA65_RS04085 0.61 -1.3 863,589 - DZA65_RS04085 0.61 -0.9 863,646 - DZA65_RS04085 0.68 -0.3 863,693 - DZA65_RS04085 0.74 -1.0 863,753 + DZA65_RS04085 0.81 +1.1 863,808 - DZA65_RS04085 0.87 -1.2 863,852 + +0.1 863,853 - +0.4 863,859 - -0.1 863,910 + -1.2 863,910 + -1.4 863,911 - +0.5 863,911 - +0.7 863,943 - +1.0 863,966 + +0.5 863,966 + -0.9 863,967 - -0.6 863,967 - +0.2 863,975 - +0.2 863,994 + +0.5 864,007 - +0.9 864,007 - -0.9 864,252 + DZA65_RS04090 0.28 -0.9 864,252 + DZA65_RS04090 0.28 -0.3 864,252 + DZA65_RS04090 0.28 +0.1 864,252 + DZA65_RS04090 0.28 -0.2 864,253 - DZA65_RS04090 0.28 +0.5 864,253 - DZA65_RS04090 0.28 +0.1 864,253 - DZA65_RS04090 0.28 -0.3 864,253 - DZA65_RS04090 0.28 -2.0 864,254 + DZA65_RS04090 0.28 -1.3 864,254 + DZA65_RS04090 0.28 +0.3 864,254 + DZA65_RS04090 0.28 -0.6 864,255 - DZA65_RS04090 0.28 -1.2 864,255 - DZA65_RS04090 0.28 -0.8 864,255 - DZA65_RS04090 0.28 -0.6 864,255 - DZA65_RS04090 0.28 -0.2 864,255 - DZA65_RS04090 0.28 +0.2 864,255 - DZA65_RS04090 0.28 +0.1 864,383 + DZA65_RS04090 0.40 -0.7 864,512 + DZA65_RS04090 0.53 -0.5 864,513 - DZA65_RS04090 0.53 +0.6 864,529 + +1.1 864,549 + DZA65_RS04090 0.57 -0.2 864,550 - DZA65_RS04090 0.57 -0.4 864,666 + DZA65_RS04090 0.68 +0.0 864,765 - DZA65_RS04090 0.78 -0.5 864,765 - DZA65_RS04090 0.78 +0.7 864,779 + DZA65_RS04090 0.79 -0.4 864,779 + +1.1 864,780 - DZA65_RS04090 0.79 -1.2 864,809 + DZA65_RS04090 0.82 +0.3 864,809 + DZA65_RS04090 0.82 -0.7 864,809 + DZA65_RS04090 0.82 -0.3 864,809 + DZA65_RS04090 0.82 +0.1 864,809 + DZA65_RS04090 0.82 +0.1 864,809 + DZA65_RS04090 0.82 +0.9 864,809 + DZA65_RS04090 0.82 +1.1 864,810 - DZA65_RS04090 0.82 +0.1 864,810 - DZA65_RS04090 0.82 -0.0 864,810 - DZA65_RS04090 0.82 +0.4 864,813 + DZA65_RS04090 0.82 -0.9 864,813 + DZA65_RS04090 0.82 -0.2 864,813 + DZA65_RS04090 0.82 +0.5 864,814 - DZA65_RS04090 0.82 +1.0 864,814 - DZA65_RS04090 0.82 -0.4 864,824 + DZA65_RS04090 0.83 -0.7 864,825 - DZA65_RS04090 0.83 -0.0 864,825 - DZA65_RS04090 0.83 +0.6 864,825 - DZA65_RS04090 0.83 -0.8 864,825 - DZA65_RS04090 0.83 +0.1 864,883 - DZA65_RS04090 0.89 -0.2
Or see this region's nucleotide sequence