Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS03870 and DZA65_RS03875 are separated by 56 nucleotides DZA65_RS03875 and DZA65_RS03880 are separated by 16 nucleotides
DZA65_RS03870: DZA65_RS03870 - sugar ABC transporter substrate-binding protein, at 821,562 to 822,500
_RS03870
DZA65_RS03875: DZA65_RS03875 - sugar ABC transporter ATP-binding protein, at 822,557 to 824,104
_RS03875
DZA65_RS03880: DZA65_RS03880 - ABC transporter permease, at 824,121 to 825,155
_RS03880
Position (kb) 822
823
824
825 Strain fitness (log2 ratio) -2
-1
0
1 at 821.572 kb on + strand at 821.572 kb on + strand at 821.573 kb on - strand at 821.946 kb on + strand, within DZA65_RS03870 at 821.946 kb on + strand, within DZA65_RS03870 at 821.946 kb on + strand, within DZA65_RS03870 at 821.946 kb on + strand, within DZA65_RS03870 at 821.946 kb on + strand, within DZA65_RS03870 at 821.946 kb on + strand, within DZA65_RS03870 at 821.946 kb on + strand, within DZA65_RS03870 at 821.946 kb on + strand, within DZA65_RS03870 at 821.947 kb on - strand, within DZA65_RS03870 at 821.947 kb on - strand, within DZA65_RS03870 at 821.947 kb on - strand, within DZA65_RS03870 at 821.947 kb on - strand, within DZA65_RS03870 at 821.947 kb on - strand, within DZA65_RS03870 at 821.947 kb on - strand, within DZA65_RS03870 at 822.053 kb on + strand, within DZA65_RS03870 at 822.053 kb on + strand, within DZA65_RS03870 at 822.054 kb on - strand, within DZA65_RS03870 at 822.054 kb on - strand, within DZA65_RS03870 at 822.054 kb on - strand, within DZA65_RS03870 at 822.054 kb on - strand, within DZA65_RS03870 at 822.097 kb on - strand, within DZA65_RS03870 at 822.398 kb on + strand, within DZA65_RS03870 at 822.398 kb on + strand, within DZA65_RS03870 at 822.398 kb on + strand, within DZA65_RS03870 at 822.399 kb on - strand, within DZA65_RS03870 at 822.399 kb on - strand, within DZA65_RS03870 at 822.498 kb on + strand at 822.499 kb on - strand at 822.499 kb on - strand at 822.499 kb on - strand at 822.499 kb on - strand at 822.578 kb on - strand at 822.692 kb on - strand at 822.692 kb on - strand at 822.816 kb on - strand, within DZA65_RS03875 at 822.816 kb on - strand, within DZA65_RS03875 at 822.944 kb on + strand, within DZA65_RS03875 at 822.944 kb on + strand, within DZA65_RS03875 at 822.945 kb on - strand, within DZA65_RS03875 at 822.945 kb on - strand, within DZA65_RS03875 at 822.945 kb on - strand, within DZA65_RS03875 at 822.945 kb on - strand, within DZA65_RS03875 at 822.960 kb on + strand, within DZA65_RS03875 at 822.960 kb on + strand, within DZA65_RS03875 at 822.960 kb on + strand, within DZA65_RS03875 at 822.960 kb on + strand, within DZA65_RS03875 at 822.960 kb on + strand, within DZA65_RS03875 at 822.960 kb on + strand, within DZA65_RS03875 at 822.960 kb on + strand, within DZA65_RS03875 at 822.961 kb on - strand, within DZA65_RS03875 at 822.961 kb on - strand, within DZA65_RS03875 at 822.961 kb on - strand, within DZA65_RS03875 at 822.961 kb on - strand, within DZA65_RS03875 at 822.961 kb on - strand, within DZA65_RS03875 at 822.961 kb on - strand, within DZA65_RS03875 at 823.148 kb on + strand, within DZA65_RS03875 at 823.148 kb on + strand, within DZA65_RS03875 at 823.148 kb on + strand, within DZA65_RS03875 at 823.149 kb on - strand, within DZA65_RS03875 at 823.149 kb on - strand, within DZA65_RS03875 at 823.149 kb on - strand, within DZA65_RS03875 at 823.149 kb on - strand, within DZA65_RS03875 at 823.149 kb on - strand, within DZA65_RS03875 at 823.149 kb on - strand, within DZA65_RS03875 at 823.149 kb on - strand, within DZA65_RS03875 at 823.149 kb on - strand, within DZA65_RS03875 at 823.149 kb on - strand, within DZA65_RS03875 at 823.149 kb on - strand, within DZA65_RS03875 at 823.149 kb on - strand, within DZA65_RS03875 at 823.149 kb on - strand, within DZA65_RS03875 at 823.149 kb on - strand, within DZA65_RS03875 at 823.200 kb on + strand, within DZA65_RS03875 at 823.422 kb on + strand, within DZA65_RS03875 at 823.422 kb on + strand, within DZA65_RS03875 at 823.422 kb on + strand, within DZA65_RS03875 at 823.423 kb on - strand, within DZA65_RS03875 at 823.423 kb on - strand, within DZA65_RS03875 at 823.426 kb on + strand, within DZA65_RS03875 at 823.426 kb on + strand, within DZA65_RS03875 at 823.426 kb on + strand, within DZA65_RS03875 at 823.427 kb on - strand, within DZA65_RS03875 at 823.427 kb on - strand, within DZA65_RS03875 at 823.510 kb on + strand, within DZA65_RS03875 at 823.511 kb on - strand, within DZA65_RS03875 at 823.511 kb on - strand, within DZA65_RS03875 at 823.511 kb on - strand, within DZA65_RS03875 at 823.544 kb on + strand, within DZA65_RS03875 at 823.545 kb on - strand, within DZA65_RS03875 at 823.545 kb on - strand, within DZA65_RS03875 at 823.545 kb on - strand, within DZA65_RS03875 at 823.636 kb on + strand, within DZA65_RS03875 at 823.688 kb on + strand, within DZA65_RS03875 at 823.688 kb on + strand, within DZA65_RS03875 at 823.689 kb on - strand, within DZA65_RS03875 at 824.261 kb on + strand, within DZA65_RS03880 at 824.262 kb on - strand, within DZA65_RS03880 at 824.262 kb on - strand, within DZA65_RS03880 at 824.262 kb on - strand, within DZA65_RS03880 at 824.262 kb on - strand, within DZA65_RS03880 at 824.309 kb on + strand, within DZA65_RS03880 at 824.309 kb on + strand, within DZA65_RS03880 at 824.309 kb on + strand, within DZA65_RS03880 at 824.309 kb on + strand, within DZA65_RS03880 at 824.309 kb on + strand, within DZA65_RS03880 at 824.309 kb on + strand, within DZA65_RS03880 at 824.309 kb on + strand, within DZA65_RS03880 at 824.309 kb on + strand, within DZA65_RS03880 at 824.309 kb on + strand, within DZA65_RS03880 at 824.310 kb on - strand, within DZA65_RS03880 at 824.310 kb on - strand, within DZA65_RS03880 at 824.310 kb on - strand, within DZA65_RS03880 at 824.310 kb on - strand, within DZA65_RS03880 at 824.310 kb on - strand, within DZA65_RS03880 at 824.310 kb on - strand, within DZA65_RS03880 at 824.310 kb on - strand, within DZA65_RS03880 at 824.313 kb on + strand, within DZA65_RS03880 at 824.313 kb on + strand, within DZA65_RS03880 at 824.313 kb on + strand, within DZA65_RS03880 at 824.314 kb on - strand, within DZA65_RS03880 at 824.314 kb on - strand, within DZA65_RS03880 at 824.314 kb on - strand, within DZA65_RS03880 at 824.314 kb on - strand, within DZA65_RS03880 at 824.314 kb on - strand, within DZA65_RS03880 at 824.314 kb on - strand, within DZA65_RS03880 at 824.314 kb on - strand at 824.412 kb on + strand, within DZA65_RS03880 at 824.412 kb on + strand, within DZA65_RS03880 at 824.412 kb on + strand, within DZA65_RS03880 at 824.412 kb on + strand, within DZA65_RS03880 at 824.412 kb on + strand, within DZA65_RS03880 at 824.412 kb on + strand, within DZA65_RS03880 at 824.412 kb on + strand, within DZA65_RS03880 at 824.412 kb on + strand, within DZA65_RS03880 at 824.413 kb on - strand, within DZA65_RS03880 at 824.413 kb on - strand, within DZA65_RS03880 at 824.413 kb on - strand, within DZA65_RS03880 at 824.413 kb on - strand, within DZA65_RS03880 at 824.413 kb on - strand, within DZA65_RS03880 at 824.418 kb on - strand, within DZA65_RS03880 at 824.691 kb on - strand, within DZA65_RS03880 at 824.691 kb on - strand, within DZA65_RS03880 at 824.691 kb on - strand, within DZA65_RS03880 at 824.696 kb on + strand, within DZA65_RS03880 at 824.725 kb on + strand, within DZA65_RS03880 at 824.725 kb on + strand, within DZA65_RS03880 at 824.725 kb on + strand, within DZA65_RS03880 at 824.726 kb on - strand, within DZA65_RS03880 at 824.726 kb on - strand, within DZA65_RS03880 at 824.726 kb on - strand, within DZA65_RS03880 at 824.744 kb on + strand, within DZA65_RS03880 at 824.744 kb on + strand, within DZA65_RS03880 at 824.744 kb on + strand, within DZA65_RS03880 at 824.744 kb on + strand, within DZA65_RS03880 at 824.744 kb on + strand, within DZA65_RS03880 at 824.745 kb on - strand, within DZA65_RS03880 at 824.745 kb on - strand, within DZA65_RS03880 at 824.745 kb on - strand, within DZA65_RS03880 at 824.745 kb on - strand, within DZA65_RS03880 at 824.745 kb on - strand, within DZA65_RS03880 at 824.841 kb on + strand, within DZA65_RS03880 at 824.841 kb on + strand, within DZA65_RS03880 at 824.841 kb on + strand, within DZA65_RS03880 at 824.841 kb on + strand, within DZA65_RS03880 at 824.841 kb on + strand, within DZA65_RS03880 at 824.841 kb on + strand, within DZA65_RS03880 at 824.841 kb on + strand, within DZA65_RS03880 at 824.841 kb on + strand, within DZA65_RS03880 at 824.841 kb on + strand, within DZA65_RS03880 at 824.841 kb on + strand, within DZA65_RS03880 at 824.842 kb on - strand, within DZA65_RS03880 at 824.842 kb on - strand, within DZA65_RS03880 at 824.842 kb on - strand, within DZA65_RS03880 at 824.842 kb on - strand, within DZA65_RS03880 at 824.842 kb on - strand, within DZA65_RS03880 at 824.842 kb on - strand, within DZA65_RS03880 at 824.842 kb on - strand, within DZA65_RS03880 at 824.842 kb on - strand, within DZA65_RS03880 at 824.842 kb on - strand, within DZA65_RS03880 at 824.842 kb on - strand, within DZA65_RS03880 at 824.842 kb on - strand at 824.842 kb on - strand, within DZA65_RS03880 at 824.842 kb on - strand, within DZA65_RS03880 at 825.005 kb on + strand, within DZA65_RS03880 at 825.005 kb on + strand, within DZA65_RS03880 at 825.069 kb on + strand at 825.069 kb on + strand at 825.069 kb on + strand at 825.069 kb on + strand at 825.072 kb on + strand at 825.072 kb on + strand at 825.073 kb on - strand at 825.073 kb on - strand at 825.073 kb on - strand at 825.073 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 821,572 + +1.2 821,572 + -1.2 821,573 - +0.5 821,946 + DZA65_RS03870 0.41 -0.3 821,946 + DZA65_RS03870 0.41 -0.6 821,946 + DZA65_RS03870 0.41 +0.3 821,946 + DZA65_RS03870 0.41 -0.5 821,946 + DZA65_RS03870 0.41 -1.0 821,946 + DZA65_RS03870 0.41 +0.6 821,946 + DZA65_RS03870 0.41 -1.3 821,946 + DZA65_RS03870 0.41 +1.2 821,947 - DZA65_RS03870 0.41 +0.2 821,947 - DZA65_RS03870 0.41 +0.4 821,947 - DZA65_RS03870 0.41 +1.5 821,947 - DZA65_RS03870 0.41 -1.2 821,947 - DZA65_RS03870 0.41 -0.6 821,947 - DZA65_RS03870 0.41 -1.5 822,053 + DZA65_RS03870 0.52 +0.4 822,053 + DZA65_RS03870 0.52 +0.2 822,054 - DZA65_RS03870 0.52 -0.4 822,054 - DZA65_RS03870 0.52 +0.6 822,054 - DZA65_RS03870 0.52 -0.2 822,054 - DZA65_RS03870 0.52 -0.6 822,097 - DZA65_RS03870 0.57 +0.6 822,398 + DZA65_RS03870 0.89 -0.4 822,398 + DZA65_RS03870 0.89 +0.8 822,398 + DZA65_RS03870 0.89 -0.2 822,399 - DZA65_RS03870 0.89 -0.3 822,399 - DZA65_RS03870 0.89 +0.6 822,498 + -1.0 822,499 - -0.8 822,499 - -0.2 822,499 - -0.2 822,499 - +0.2 822,578 - -0.4 822,692 - +1.2 822,692 - +0.8 822,816 - DZA65_RS03875 0.17 -0.5 822,816 - DZA65_RS03875 0.17 -0.1 822,944 + DZA65_RS03875 0.25 +0.7 822,944 + DZA65_RS03875 0.25 -0.7 822,945 - DZA65_RS03875 0.25 -0.1 822,945 - DZA65_RS03875 0.25 -1.0 822,945 - DZA65_RS03875 0.25 -1.2 822,945 - DZA65_RS03875 0.25 -0.0 822,960 + DZA65_RS03875 0.26 +0.2 822,960 + DZA65_RS03875 0.26 +0.2 822,960 + DZA65_RS03875 0.26 +0.2 822,960 + DZA65_RS03875 0.26 -0.2 822,960 + DZA65_RS03875 0.26 +0.2 822,960 + DZA65_RS03875 0.26 -0.7 822,960 + DZA65_RS03875 0.26 -0.6 822,961 - DZA65_RS03875 0.26 -0.6 822,961 - DZA65_RS03875 0.26 -1.2 822,961 - DZA65_RS03875 0.26 -0.1 822,961 - DZA65_RS03875 0.26 +0.0 822,961 - DZA65_RS03875 0.26 -0.3 822,961 - DZA65_RS03875 0.26 +0.6 823,148 + DZA65_RS03875 0.38 -1.0 823,148 + DZA65_RS03875 0.38 -0.8 823,148 + DZA65_RS03875 0.38 -0.4 823,149 - DZA65_RS03875 0.38 -0.1 823,149 - DZA65_RS03875 0.38 -0.2 823,149 - DZA65_RS03875 0.38 -0.9 823,149 - DZA65_RS03875 0.38 -0.8 823,149 - DZA65_RS03875 0.38 -1.2 823,149 - DZA65_RS03875 0.38 -2.0 823,149 - DZA65_RS03875 0.38 -0.8 823,149 - DZA65_RS03875 0.38 -1.9 823,149 - DZA65_RS03875 0.38 -0.4 823,149 - DZA65_RS03875 0.38 -1.4 823,149 - DZA65_RS03875 0.38 -0.1 823,149 - DZA65_RS03875 0.38 +0.6 823,149 - DZA65_RS03875 0.38 +0.9 823,200 + DZA65_RS03875 0.42 -0.6 823,422 + DZA65_RS03875 0.56 -0.6 823,422 + DZA65_RS03875 0.56 -1.5 823,422 + DZA65_RS03875 0.56 -0.9 823,423 - DZA65_RS03875 0.56 -0.4 823,423 - DZA65_RS03875 0.56 -0.4 823,426 + DZA65_RS03875 0.56 -1.2 823,426 + DZA65_RS03875 0.56 -0.0 823,426 + DZA65_RS03875 0.56 -0.0 823,427 - DZA65_RS03875 0.56 -1.6 823,427 - DZA65_RS03875 0.56 +0.1 823,510 + DZA65_RS03875 0.62 +0.6 823,511 - DZA65_RS03875 0.62 -0.1 823,511 - DZA65_RS03875 0.62 -0.8 823,511 - DZA65_RS03875 0.62 -0.1 823,544 + DZA65_RS03875 0.64 -0.2 823,545 - DZA65_RS03875 0.64 -1.2 823,545 - DZA65_RS03875 0.64 +0.3 823,545 - DZA65_RS03875 0.64 +0.3 823,636 + DZA65_RS03875 0.70 -0.4 823,688 + DZA65_RS03875 0.73 -0.3 823,688 + DZA65_RS03875 0.73 +0.2 823,689 - DZA65_RS03875 0.73 -0.8 824,261 + DZA65_RS03880 0.14 -0.1 824,262 - DZA65_RS03880 0.14 -0.8 824,262 - DZA65_RS03880 0.14 -0.6 824,262 - DZA65_RS03880 0.14 +0.1 824,262 - DZA65_RS03880 0.14 -0.3 824,309 + DZA65_RS03880 0.18 -1.1 824,309 + DZA65_RS03880 0.18 +0.8 824,309 + DZA65_RS03880 0.18 -1.8 824,309 + DZA65_RS03880 0.18 +0.2 824,309 + DZA65_RS03880 0.18 -1.5 824,309 + DZA65_RS03880 0.18 +0.4 824,309 + DZA65_RS03880 0.18 +0.4 824,309 + DZA65_RS03880 0.18 +0.7 824,309 + DZA65_RS03880 0.18 +0.5 824,310 - DZA65_RS03880 0.18 -0.3 824,310 - DZA65_RS03880 0.18 -0.3 824,310 - DZA65_RS03880 0.18 +0.7 824,310 - DZA65_RS03880 0.18 -0.1 824,310 - DZA65_RS03880 0.18 -0.2 824,310 - DZA65_RS03880 0.18 +1.4 824,310 - DZA65_RS03880 0.18 +0.7 824,313 + DZA65_RS03880 0.19 +0.7 824,313 + DZA65_RS03880 0.19 +0.5 824,313 + DZA65_RS03880 0.19 -0.4 824,314 - DZA65_RS03880 0.19 -0.6 824,314 - DZA65_RS03880 0.19 -1.3 824,314 - DZA65_RS03880 0.19 +0.1 824,314 - DZA65_RS03880 0.19 -1.0 824,314 - DZA65_RS03880 0.19 +0.2 824,314 - DZA65_RS03880 0.19 +1.0 824,314 - +1.2 824,412 + DZA65_RS03880 0.28 -0.2 824,412 + DZA65_RS03880 0.28 +0.2 824,412 + DZA65_RS03880 0.28 +0.1 824,412 + DZA65_RS03880 0.28 -0.4 824,412 + DZA65_RS03880 0.28 -0.2 824,412 + DZA65_RS03880 0.28 -0.5 824,412 + DZA65_RS03880 0.28 -1.8 824,412 + DZA65_RS03880 0.28 -0.8 824,413 - DZA65_RS03880 0.28 +1.3 824,413 - DZA65_RS03880 0.28 +0.6 824,413 - DZA65_RS03880 0.28 +1.5 824,413 - DZA65_RS03880 0.28 -0.4 824,413 - DZA65_RS03880 0.28 +0.7 824,418 - DZA65_RS03880 0.29 -0.2 824,691 - DZA65_RS03880 0.55 -0.0 824,691 - DZA65_RS03880 0.55 -1.4 824,691 - DZA65_RS03880 0.55 -1.0 824,696 + DZA65_RS03880 0.56 -0.4 824,725 + DZA65_RS03880 0.58 +0.8 824,725 + DZA65_RS03880 0.58 -0.3 824,725 + DZA65_RS03880 0.58 +0.4 824,726 - DZA65_RS03880 0.58 +1.0 824,726 - DZA65_RS03880 0.58 +0.3 824,726 - DZA65_RS03880 0.58 +0.3 824,744 + DZA65_RS03880 0.60 +0.3 824,744 + DZA65_RS03880 0.60 +0.2 824,744 + DZA65_RS03880 0.60 -2.3 824,744 + DZA65_RS03880 0.60 +0.8 824,744 + DZA65_RS03880 0.60 +0.2 824,745 - DZA65_RS03880 0.60 +1.2 824,745 - DZA65_RS03880 0.60 -0.4 824,745 - DZA65_RS03880 0.60 -0.4 824,745 - DZA65_RS03880 0.60 -0.8 824,745 - DZA65_RS03880 0.60 +0.8 824,841 + DZA65_RS03880 0.70 -0.7 824,841 + DZA65_RS03880 0.70 +0.2 824,841 + DZA65_RS03880 0.70 -1.0 824,841 + DZA65_RS03880 0.70 -0.1 824,841 + DZA65_RS03880 0.70 +0.5 824,841 + DZA65_RS03880 0.70 +0.5 824,841 + DZA65_RS03880 0.70 -0.6 824,841 + DZA65_RS03880 0.70 -0.8 824,841 + DZA65_RS03880 0.70 +0.4 824,841 + DZA65_RS03880 0.70 +0.6 824,842 - DZA65_RS03880 0.70 +0.0 824,842 - DZA65_RS03880 0.70 -1.8 824,842 - DZA65_RS03880 0.70 -1.0 824,842 - DZA65_RS03880 0.70 -1.3 824,842 - DZA65_RS03880 0.70 -0.8 824,842 - DZA65_RS03880 0.70 -0.3 824,842 - DZA65_RS03880 0.70 -0.8 824,842 - DZA65_RS03880 0.70 -0.7 824,842 - DZA65_RS03880 0.70 -1.4 824,842 - DZA65_RS03880 0.70 +0.9 824,842 - +1.2 824,842 - DZA65_RS03880 0.70 +1.3 824,842 - DZA65_RS03880 0.70 -0.4 825,005 + DZA65_RS03880 0.85 -1.1 825,005 + DZA65_RS03880 0.85 +0.7 825,069 + -0.8 825,069 + +0.3 825,069 + -0.2 825,069 + -0.6 825,072 + -1.3 825,072 + -0.2 825,073 - -0.1 825,073 - -0.7 825,073 - -1.7 825,073 - -0.3
Or see this region's nucleotide sequence