Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS03800 and DZA65_RS03805 are separated by 142 nucleotides DZA65_RS03805 and DZA65_RS03810 are separated by 108 nucleotides DZA65_RS03810 and DZA65_RS03815 are separated by 132 nucleotides
DZA65_RS03800: DZA65_RS03800 - hypothetical protein, at 807,424 to 807,846
_RS03800
DZA65_RS03805: DZA65_RS03805 - GNAT family N-acetyltransferase, at 807,989 to 808,534
_RS03805
DZA65_RS03810: DZA65_RS03810 - YnfC family lipoprotein, at 808,643 to 809,368
_RS03810
DZA65_RS03815: DZA65_RS03815 - glycosyl hydrolase 43 family protein, at 809,501 to 811,069
_RS03815
Position (kb) 808
809
810 Strain fitness (log2 ratio) -2
-1
0
1
2 at 807.655 kb on + strand, within DZA65_RS03800 at 807.748 kb on + strand, within DZA65_RS03800 at 807.756 kb on + strand, within DZA65_RS03800 at 807.791 kb on - strand, within DZA65_RS03800 at 807.800 kb on - strand, within DZA65_RS03800 at 807.838 kb on + strand at 807.839 kb on - strand at 807.839 kb on - strand at 807.839 kb on - strand at 807.839 kb on - strand at 807.839 kb on - strand at 807.839 kb on - strand at 807.869 kb on + strand at 807.869 kb on + strand at 807.869 kb on + strand at 807.870 kb on - strand at 807.936 kb on + strand at 807.936 kb on + strand at 807.936 kb on + strand at 807.936 kb on + strand at 807.937 kb on - strand at 808.193 kb on + strand, within DZA65_RS03805 at 808.335 kb on + strand, within DZA65_RS03805 at 808.336 kb on - strand, within DZA65_RS03805 at 808.376 kb on + strand, within DZA65_RS03805 at 808.376 kb on + strand, within DZA65_RS03805 at 808.376 kb on + strand, within DZA65_RS03805 at 808.376 kb on + strand, within DZA65_RS03805 at 808.376 kb on + strand, within DZA65_RS03805 at 808.376 kb on + strand, within DZA65_RS03805 at 808.376 kb on + strand, within DZA65_RS03805 at 808.376 kb on + strand, within DZA65_RS03805 at 808.376 kb on + strand, within DZA65_RS03805 at 808.377 kb on - strand, within DZA65_RS03805 at 808.377 kb on - strand, within DZA65_RS03805 at 808.377 kb on - strand, within DZA65_RS03805 at 808.499 kb on + strand at 808.499 kb on + strand at 808.499 kb on + strand at 808.499 kb on + strand at 808.499 kb on + strand at 808.499 kb on + strand at 808.499 kb on + strand at 808.500 kb on - strand at 808.500 kb on - strand at 808.500 kb on - strand at 808.574 kb on + strand at 808.575 kb on - strand at 808.575 kb on - strand at 808.575 kb on - strand at 808.580 kb on + strand at 808.580 kb on + strand at 808.580 kb on + strand at 808.581 kb on - strand at 808.581 kb on - strand at 808.589 kb on + strand at 808.589 kb on + strand at 808.589 kb on + strand at 808.589 kb on + strand at 808.589 kb on + strand at 808.589 kb on + strand at 808.605 kb on - strand at 808.627 kb on - strand at 808.627 kb on - strand at 808.627 kb on - strand at 808.642 kb on + strand at 808.642 kb on + strand at 808.642 kb on + strand at 808.642 kb on + strand at 808.642 kb on + strand at 808.642 kb on + strand at 808.643 kb on - strand at 808.650 kb on + strand at 808.650 kb on + strand at 808.650 kb on + strand at 808.650 kb on + strand at 808.651 kb on - strand at 808.651 kb on - strand at 808.678 kb on - strand at 808.678 kb on - strand at 808.680 kb on + strand at 808.681 kb on - strand at 808.681 kb on - strand at 808.681 kb on - strand at 808.829 kb on + strand, within DZA65_RS03810 at 808.829 kb on + strand, within DZA65_RS03810 at 808.829 kb on + strand, within DZA65_RS03810 at 808.829 kb on + strand, within DZA65_RS03810 at 808.829 kb on + strand, within DZA65_RS03810 at 808.829 kb on + strand, within DZA65_RS03810 at 808.830 kb on - strand, within DZA65_RS03810 at 808.830 kb on - strand, within DZA65_RS03810 at 808.830 kb on - strand, within DZA65_RS03810 at 808.830 kb on - strand, within DZA65_RS03810 at 808.830 kb on - strand, within DZA65_RS03810 at 808.830 kb on - strand, within DZA65_RS03810 at 808.880 kb on + strand, within DZA65_RS03810 at 808.880 kb on + strand, within DZA65_RS03810 at 808.880 kb on + strand, within DZA65_RS03810 at 808.880 kb on + strand, within DZA65_RS03810 at 808.880 kb on + strand, within DZA65_RS03810 at 808.880 kb on + strand, within DZA65_RS03810 at 808.881 kb on - strand, within DZA65_RS03810 at 809.033 kb on + strand, within DZA65_RS03810 at 809.033 kb on + strand, within DZA65_RS03810 at 809.033 kb on + strand, within DZA65_RS03810 at 809.033 kb on + strand, within DZA65_RS03810 at 809.033 kb on + strand, within DZA65_RS03810 at 809.033 kb on + strand, within DZA65_RS03810 at 809.033 kb on + strand, within DZA65_RS03810 at 809.033 kb on + strand, within DZA65_RS03810 at 809.033 kb on + strand, within DZA65_RS03810 at 809.033 kb on + strand, within DZA65_RS03810 at 809.033 kb on + strand, within DZA65_RS03810 at 809.033 kb on + strand, within DZA65_RS03810 at 809.033 kb on + strand, within DZA65_RS03810 at 809.033 kb on + strand, within DZA65_RS03810 at 809.033 kb on + strand, within DZA65_RS03810 at 809.033 kb on + strand, within DZA65_RS03810 at 809.034 kb on - strand, within DZA65_RS03810 at 809.034 kb on - strand, within DZA65_RS03810 at 809.034 kb on - strand, within DZA65_RS03810 at 809.034 kb on - strand, within DZA65_RS03810 at 809.034 kb on - strand, within DZA65_RS03810 at 809.034 kb on - strand, within DZA65_RS03810 at 809.034 kb on - strand, within DZA65_RS03810 at 809.034 kb on - strand, within DZA65_RS03810 at 809.034 kb on - strand, within DZA65_RS03810 at 809.034 kb on - strand, within DZA65_RS03810 at 809.038 kb on + strand, within DZA65_RS03810 at 809.054 kb on + strand, within DZA65_RS03810 at 809.055 kb on - strand, within DZA65_RS03810 at 809.084 kb on + strand, within DZA65_RS03810 at 809.085 kb on - strand, within DZA65_RS03810 at 809.085 kb on - strand, within DZA65_RS03810 at 809.085 kb on - strand, within DZA65_RS03810 at 809.085 kb on - strand, within DZA65_RS03810 at 809.085 kb on - strand, within DZA65_RS03810 at 809.157 kb on + strand, within DZA65_RS03810 at 809.158 kb on - strand, within DZA65_RS03810 at 809.158 kb on - strand, within DZA65_RS03810 at 809.158 kb on - strand, within DZA65_RS03810 at 809.158 kb on - strand, within DZA65_RS03810 at 809.221 kb on + strand, within DZA65_RS03810 at 809.222 kb on - strand, within DZA65_RS03810 at 809.344 kb on + strand at 809.344 kb on + strand at 809.344 kb on + strand at 809.344 kb on + strand at 809.345 kb on - strand at 809.360 kb on + strand at 809.361 kb on - strand at 809.361 kb on - strand at 809.361 kb on - strand at 809.363 kb on + strand at 809.363 kb on + strand at 809.363 kb on + strand at 809.363 kb on + strand at 809.364 kb on - strand at 809.364 kb on - strand at 809.364 kb on - strand at 809.364 kb on - strand at 809.364 kb on - strand at 809.364 kb on - strand at 809.364 kb on - strand at 809.364 kb on - strand at 809.364 kb on - strand at 809.364 kb on - strand at 809.366 kb on + strand at 809.366 kb on + strand at 809.366 kb on + strand at 809.367 kb on - strand at 809.367 kb on - strand at 809.367 kb on - strand at 809.395 kb on + strand at 809.395 kb on + strand at 809.395 kb on + strand at 809.396 kb on - strand at 809.396 kb on - strand at 809.449 kb on + strand at 809.449 kb on + strand at 809.449 kb on + strand at 809.449 kb on + strand at 809.449 kb on + strand at 809.449 kb on + strand at 809.450 kb on - strand at 809.450 kb on - strand at 809.451 kb on + strand at 809.451 kb on + strand at 809.452 kb on - strand at 809.452 kb on - strand at 809.452 kb on - strand at 809.572 kb on - strand at 809.732 kb on + strand, within DZA65_RS03815 at 809.732 kb on + strand, within DZA65_RS03815 at 809.732 kb on + strand, within DZA65_RS03815 at 809.732 kb on + strand, within DZA65_RS03815 at 809.733 kb on - strand, within DZA65_RS03815 at 809.749 kb on - strand, within DZA65_RS03815 at 809.749 kb on - strand, within DZA65_RS03815 at 809.850 kb on + strand, within DZA65_RS03815 at 809.851 kb on - strand, within DZA65_RS03815 at 809.851 kb on - strand, within DZA65_RS03815 at 810.033 kb on + strand, within DZA65_RS03815 at 810.034 kb on - strand, within DZA65_RS03815 at 810.242 kb on + strand, within DZA65_RS03815 at 810.242 kb on + strand, within DZA65_RS03815 at 810.255 kb on + strand, within DZA65_RS03815 at 810.255 kb on + strand, within DZA65_RS03815 at 810.256 kb on - strand, within DZA65_RS03815 at 810.256 kb on - strand, within DZA65_RS03815
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 807,655 + DZA65_RS03800 0.55 -0.6 807,748 + DZA65_RS03800 0.77 -0.0 807,756 + DZA65_RS03800 0.78 +0.8 807,791 - DZA65_RS03800 0.87 -0.1 807,800 - DZA65_RS03800 0.89 +1.2 807,838 + -0.1 807,839 - -0.6 807,839 - -0.3 807,839 - -1.4 807,839 - -0.6 807,839 - -0.2 807,839 - +0.8 807,869 + -0.6 807,869 + -0.1 807,869 + -0.3 807,870 - +0.2 807,936 + +0.1 807,936 + +0.7 807,936 + -0.4 807,936 + -0.9 807,937 - +0.6 808,193 + DZA65_RS03805 0.37 +0.8 808,335 + DZA65_RS03805 0.63 +0.2 808,336 - DZA65_RS03805 0.64 +0.4 808,376 + DZA65_RS03805 0.71 -0.2 808,376 + DZA65_RS03805 0.71 +0.5 808,376 + DZA65_RS03805 0.71 -0.8 808,376 + DZA65_RS03805 0.71 -0.2 808,376 + DZA65_RS03805 0.71 -0.0 808,376 + DZA65_RS03805 0.71 -1.5 808,376 + DZA65_RS03805 0.71 +0.2 808,376 + DZA65_RS03805 0.71 -0.1 808,376 + DZA65_RS03805 0.71 +1.8 808,377 - DZA65_RS03805 0.71 -1.3 808,377 - DZA65_RS03805 0.71 -1.0 808,377 - DZA65_RS03805 0.71 +1.2 808,499 + +1.8 808,499 + +0.0 808,499 + +0.8 808,499 + -0.1 808,499 + +0.1 808,499 + -0.6 808,499 + +0.5 808,500 - +1.2 808,500 - -1.2 808,500 - +0.6 808,574 + -0.4 808,575 - -1.6 808,575 - +0.4 808,575 - -0.1 808,580 + +0.9 808,580 + -1.2 808,580 + -0.6 808,581 - +0.9 808,581 - +0.8 808,589 + -0.1 808,589 + +0.7 808,589 + +0.2 808,589 + +0.7 808,589 + +0.3 808,589 + +0.2 808,605 - -1.0 808,627 - -0.0 808,627 - -0.4 808,627 - +1.6 808,642 + +0.2 808,642 + -1.0 808,642 + -0.5 808,642 + +0.3 808,642 + +0.5 808,642 + -0.2 808,643 - +0.0 808,650 + +0.5 808,650 + +1.0 808,650 + +1.2 808,650 + +0.1 808,651 - -0.5 808,651 - +0.1 808,678 - -0.5 808,678 - +0.4 808,680 + +0.6 808,681 - -0.8 808,681 - -0.0 808,681 - -0.3 808,829 + DZA65_RS03810 0.26 +0.0 808,829 + DZA65_RS03810 0.26 +0.1 808,829 + DZA65_RS03810 0.26 -0.4 808,829 + DZA65_RS03810 0.26 +0.1 808,829 + DZA65_RS03810 0.26 +1.4 808,829 + DZA65_RS03810 0.26 -0.3 808,830 - DZA65_RS03810 0.26 +0.6 808,830 - DZA65_RS03810 0.26 +0.2 808,830 - DZA65_RS03810 0.26 -0.8 808,830 - DZA65_RS03810 0.26 +2.6 808,830 - DZA65_RS03810 0.26 +0.3 808,830 - DZA65_RS03810 0.26 +0.8 808,880 + DZA65_RS03810 0.33 -0.5 808,880 + DZA65_RS03810 0.33 -1.0 808,880 + DZA65_RS03810 0.33 +0.2 808,880 + DZA65_RS03810 0.33 +2.2 808,880 + DZA65_RS03810 0.33 -0.8 808,880 + DZA65_RS03810 0.33 +0.4 808,881 - DZA65_RS03810 0.33 +0.2 809,033 + DZA65_RS03810 0.54 +0.2 809,033 + DZA65_RS03810 0.54 -0.3 809,033 + DZA65_RS03810 0.54 +0.2 809,033 + DZA65_RS03810 0.54 -0.3 809,033 + DZA65_RS03810 0.54 -0.4 809,033 + DZA65_RS03810 0.54 +0.1 809,033 + DZA65_RS03810 0.54 -0.2 809,033 + DZA65_RS03810 0.54 +0.9 809,033 + DZA65_RS03810 0.54 +0.6 809,033 + DZA65_RS03810 0.54 -0.8 809,033 + DZA65_RS03810 0.54 -0.8 809,033 + DZA65_RS03810 0.54 +0.2 809,033 + DZA65_RS03810 0.54 -0.6 809,033 + DZA65_RS03810 0.54 -0.4 809,033 + DZA65_RS03810 0.54 +0.4 809,033 + DZA65_RS03810 0.54 -2.0 809,034 - DZA65_RS03810 0.54 +0.7 809,034 - DZA65_RS03810 0.54 -0.1 809,034 - DZA65_RS03810 0.54 -0.4 809,034 - DZA65_RS03810 0.54 -2.3 809,034 - DZA65_RS03810 0.54 -0.1 809,034 - DZA65_RS03810 0.54 +0.5 809,034 - DZA65_RS03810 0.54 +0.8 809,034 - DZA65_RS03810 0.54 +0.6 809,034 - DZA65_RS03810 0.54 -0.9 809,034 - DZA65_RS03810 0.54 -0.3 809,038 + DZA65_RS03810 0.54 -1.8 809,054 + DZA65_RS03810 0.57 -0.1 809,055 - DZA65_RS03810 0.57 -0.2 809,084 + DZA65_RS03810 0.61 +0.8 809,085 - DZA65_RS03810 0.61 +1.0 809,085 - DZA65_RS03810 0.61 -0.7 809,085 - DZA65_RS03810 0.61 -0.6 809,085 - DZA65_RS03810 0.61 +0.2 809,085 - DZA65_RS03810 0.61 -0.5 809,157 + DZA65_RS03810 0.71 -0.0 809,158 - DZA65_RS03810 0.71 +0.5 809,158 - DZA65_RS03810 0.71 -0.4 809,158 - DZA65_RS03810 0.71 -0.3 809,158 - DZA65_RS03810 0.71 +0.2 809,221 + DZA65_RS03810 0.80 -0.3 809,222 - DZA65_RS03810 0.80 +1.4 809,344 + -1.4 809,344 + -1.2 809,344 + -0.7 809,344 + -0.4 809,345 - -0.6 809,360 + -1.2 809,361 - -1.2 809,361 - -0.3 809,361 - -0.2 809,363 + -0.4 809,363 + +1.2 809,363 + -0.7 809,363 + -0.8 809,364 - -0.4 809,364 - +0.6 809,364 - -0.8 809,364 - +2.0 809,364 - +0.2 809,364 - +1.2 809,364 - -1.3 809,364 - +0.5 809,364 - -0.0 809,364 - -1.0 809,366 + -1.2 809,366 + -0.5 809,366 + -0.3 809,367 - -1.2 809,367 - -0.4 809,367 - -1.8 809,395 + +0.4 809,395 + +1.1 809,395 + -1.5 809,396 - -0.2 809,396 - -0.0 809,449 + +2.2 809,449 + +0.4 809,449 + +0.6 809,449 + +0.7 809,449 + -1.4 809,449 + -0.4 809,450 - +0.9 809,450 - +0.1 809,451 + +0.5 809,451 + -1.5 809,452 - +1.4 809,452 - -0.4 809,452 - +0.5 809,572 - -1.0 809,732 + DZA65_RS03815 0.15 -0.1 809,732 + DZA65_RS03815 0.15 -1.8 809,732 + DZA65_RS03815 0.15 -2.0 809,732 + DZA65_RS03815 0.15 -0.7 809,733 - DZA65_RS03815 0.15 -0.1 809,749 - DZA65_RS03815 0.16 -0.4 809,749 - DZA65_RS03815 0.16 -0.6 809,850 + DZA65_RS03815 0.22 -0.2 809,851 - DZA65_RS03815 0.22 +0.6 809,851 - DZA65_RS03815 0.22 -1.0 810,033 + DZA65_RS03815 0.34 -0.3 810,034 - DZA65_RS03815 0.34 +0.2 810,242 + DZA65_RS03815 0.47 +0.8 810,242 + DZA65_RS03815 0.47 -0.5 810,255 + DZA65_RS03815 0.48 -1.2 810,255 + DZA65_RS03815 0.48 +1.0 810,256 - DZA65_RS03815 0.48 -0.9 810,256 - DZA65_RS03815 0.48 -0.7
Or see this region's nucleotide sequence