Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS03760 and DZA65_RS03765 are separated by 101 nucleotides DZA65_RS03765 and DZA65_RS03770 overlap by 14 nucleotides
DZA65_RS03760: DZA65_RS03760 - fructuronate reductase, at 794,467 to 795,981
_RS03760
DZA65_RS03765: DZA65_RS03765 - DHA2 family efflux MFS transporter permease subunit, at 796,083 to 797,687
_RS03765
DZA65_RS03770: DZA65_RS03770 - HlyD family secretion protein, at 797,674 to 798,831
_RS03770
Position (kb) 796
797
798 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 795.282 kb on + strand, within DZA65_RS03760 at 795.282 kb on + strand, within DZA65_RS03760 at 795.282 kb on + strand, within DZA65_RS03760 at 795.282 kb on + strand, within DZA65_RS03760 at 795.283 kb on - strand, within DZA65_RS03760 at 795.493 kb on + strand, within DZA65_RS03760 at 795.493 kb on + strand, within DZA65_RS03760 at 795.494 kb on - strand, within DZA65_RS03760 at 795.525 kb on + strand, within DZA65_RS03760 at 795.558 kb on + strand, within DZA65_RS03760 at 795.754 kb on + strand, within DZA65_RS03760 at 795.754 kb on + strand, within DZA65_RS03760 at 795.754 kb on + strand, within DZA65_RS03760 at 795.755 kb on - strand, within DZA65_RS03760 at 795.755 kb on - strand, within DZA65_RS03760 at 795.755 kb on - strand, within DZA65_RS03760 at 795.755 kb on - strand, within DZA65_RS03760 at 795.853 kb on + strand at 795.853 kb on + strand at 795.853 kb on + strand at 795.853 kb on + strand at 795.853 kb on + strand at 795.853 kb on + strand at 795.853 kb on + strand at 795.853 kb on + strand at 795.854 kb on - strand at 795.854 kb on - strand at 795.854 kb on - strand at 795.854 kb on - strand at 795.854 kb on - strand at 795.854 kb on - strand at 795.854 kb on - strand at 795.854 kb on - strand at 795.981 kb on + strand at 795.981 kb on + strand at 795.982 kb on - strand at 796.023 kb on - strand at 796.053 kb on + strand at 796.249 kb on + strand, within DZA65_RS03765 at 796.249 kb on + strand, within DZA65_RS03765 at 796.250 kb on - strand, within DZA65_RS03765 at 796.250 kb on - strand, within DZA65_RS03765 at 796.250 kb on - strand, within DZA65_RS03765 at 796.250 kb on - strand, within DZA65_RS03765 at 796.250 kb on - strand, within DZA65_RS03765 at 796.250 kb on - strand at 796.250 kb on - strand, within DZA65_RS03765 at 796.713 kb on + strand, within DZA65_RS03765 at 796.713 kb on + strand, within DZA65_RS03765 at 796.713 kb on + strand, within DZA65_RS03765 at 796.714 kb on - strand, within DZA65_RS03765 at 796.714 kb on - strand, within DZA65_RS03765 at 796.714 kb on - strand, within DZA65_RS03765 at 796.714 kb on - strand, within DZA65_RS03765 at 796.714 kb on - strand, within DZA65_RS03765 at 796.788 kb on + strand, within DZA65_RS03765 at 796.788 kb on + strand, within DZA65_RS03765 at 796.789 kb on - strand, within DZA65_RS03765 at 796.805 kb on + strand, within DZA65_RS03765 at 796.805 kb on + strand, within DZA65_RS03765 at 796.805 kb on + strand, within DZA65_RS03765 at 796.805 kb on + strand, within DZA65_RS03765 at 796.806 kb on - strand, within DZA65_RS03765 at 796.806 kb on - strand, within DZA65_RS03765 at 796.806 kb on - strand, within DZA65_RS03765 at 796.806 kb on - strand, within DZA65_RS03765 at 796.807 kb on + strand, within DZA65_RS03765 at 796.807 kb on + strand, within DZA65_RS03765 at 796.807 kb on + strand, within DZA65_RS03765 at 796.807 kb on + strand, within DZA65_RS03765 at 796.807 kb on + strand, within DZA65_RS03765 at 796.807 kb on + strand, within DZA65_RS03765 at 796.807 kb on + strand, within DZA65_RS03765 at 796.807 kb on + strand, within DZA65_RS03765 at 796.807 kb on + strand, within DZA65_RS03765 at 796.807 kb on + strand, within DZA65_RS03765 at 796.807 kb on + strand, within DZA65_RS03765 at 796.807 kb on + strand, within DZA65_RS03765 at 796.807 kb on + strand, within DZA65_RS03765 at 796.807 kb on + strand, within DZA65_RS03765 at 796.807 kb on + strand, within DZA65_RS03765 at 796.808 kb on - strand, within DZA65_RS03765 at 796.808 kb on - strand, within DZA65_RS03765 at 796.808 kb on - strand, within DZA65_RS03765 at 796.808 kb on - strand, within DZA65_RS03765 at 796.808 kb on - strand, within DZA65_RS03765 at 796.808 kb on - strand at 796.808 kb on - strand, within DZA65_RS03765 at 796.808 kb on - strand, within DZA65_RS03765 at 796.808 kb on - strand, within DZA65_RS03765 at 796.808 kb on - strand, within DZA65_RS03765 at 796.808 kb on - strand, within DZA65_RS03765 at 796.808 kb on - strand, within DZA65_RS03765 at 796.808 kb on - strand, within DZA65_RS03765 at 796.808 kb on - strand, within DZA65_RS03765 at 796.819 kb on + strand, within DZA65_RS03765 at 796.819 kb on + strand, within DZA65_RS03765 at 796.820 kb on - strand, within DZA65_RS03765 at 796.820 kb on - strand, within DZA65_RS03765 at 796.820 kb on - strand, within DZA65_RS03765 at 796.851 kb on - strand, within DZA65_RS03765 at 796.851 kb on - strand, within DZA65_RS03765 at 796.851 kb on - strand, within DZA65_RS03765 at 796.851 kb on - strand, within DZA65_RS03765 at 796.904 kb on - strand, within DZA65_RS03765 at 797.052 kb on - strand, within DZA65_RS03765 at 797.052 kb on - strand, within DZA65_RS03765 at 797.052 kb on - strand, within DZA65_RS03765 at 797.096 kb on + strand, within DZA65_RS03765 at 797.096 kb on + strand, within DZA65_RS03765 at 797.096 kb on + strand, within DZA65_RS03765 at 797.097 kb on - strand, within DZA65_RS03765 at 797.097 kb on - strand, within DZA65_RS03765 at 797.097 kb on - strand, within DZA65_RS03765 at 797.097 kb on - strand, within DZA65_RS03765 at 797.232 kb on + strand, within DZA65_RS03765 at 797.232 kb on + strand, within DZA65_RS03765 at 797.233 kb on - strand, within DZA65_RS03765 at 797.233 kb on - strand, within DZA65_RS03765 at 797.233 kb on - strand, within DZA65_RS03765 at 797.236 kb on - strand, within DZA65_RS03765 at 797.236 kb on - strand, within DZA65_RS03765 at 797.236 kb on - strand, within DZA65_RS03765 at 797.248 kb on + strand, within DZA65_RS03765 at 797.248 kb on + strand, within DZA65_RS03765 at 797.249 kb on - strand at 797.249 kb on - strand, within DZA65_RS03765 at 797.249 kb on - strand, within DZA65_RS03765 at 797.249 kb on - strand, within DZA65_RS03765 at 797.431 kb on + strand, within DZA65_RS03765 at 797.431 kb on + strand, within DZA65_RS03765 at 797.431 kb on + strand, within DZA65_RS03765 at 797.431 kb on + strand, within DZA65_RS03765 at 797.432 kb on - strand, within DZA65_RS03765 at 797.432 kb on - strand, within DZA65_RS03765 at 797.571 kb on + strand at 797.572 kb on - strand at 797.572 kb on - strand at 797.572 kb on - strand at 797.572 kb on - strand at 797.572 kb on - strand at 797.572 kb on - strand at 797.572 kb on - strand at 797.572 kb on - strand at 797.644 kb on + strand at 797.645 kb on - strand at 797.648 kb on + strand at 797.648 kb on + strand at 797.648 kb on + strand at 797.648 kb on + strand at 797.648 kb on + strand at 797.648 kb on + strand at 797.648 kb on + strand at 797.648 kb on + strand at 797.648 kb on + strand at 797.648 kb on + strand at 797.648 kb on + strand at 797.649 kb on - strand at 797.649 kb on - strand at 797.649 kb on - strand at 797.649 kb on - strand at 797.649 kb on - strand at 797.649 kb on - strand at 797.649 kb on - strand at 797.649 kb on - strand at 797.649 kb on - strand at 797.764 kb on - strand at 797.764 kb on - strand at 797.928 kb on + strand, within DZA65_RS03770 at 798.041 kb on + strand, within DZA65_RS03770 at 798.041 kb on + strand, within DZA65_RS03770 at 798.041 kb on + strand, within DZA65_RS03770 at 798.041 kb on + strand, within DZA65_RS03770 at 798.042 kb on - strand, within DZA65_RS03770 at 798.042 kb on - strand, within DZA65_RS03770 at 798.042 kb on - strand at 798.363 kb on + strand, within DZA65_RS03770 at 798.364 kb on - strand, within DZA65_RS03770 at 798.492 kb on - strand, within DZA65_RS03770 at 798.492 kb on - strand, within DZA65_RS03770 at 798.565 kb on + strand, within DZA65_RS03770 at 798.566 kb on - strand, within DZA65_RS03770 at 798.566 kb on - strand, within DZA65_RS03770
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 795,282 + DZA65_RS03760 0.54 +0.7 795,282 + DZA65_RS03760 0.54 -0.5 795,282 + DZA65_RS03760 0.54 +0.1 795,282 + DZA65_RS03760 0.54 -1.0 795,283 - DZA65_RS03760 0.54 +1.2 795,493 + DZA65_RS03760 0.68 -0.2 795,493 + DZA65_RS03760 0.68 +1.0 795,494 - DZA65_RS03760 0.68 -1.9 795,525 + DZA65_RS03760 0.70 +1.3 795,558 + DZA65_RS03760 0.72 +0.9 795,754 + DZA65_RS03760 0.85 -0.9 795,754 + DZA65_RS03760 0.85 -0.4 795,754 + DZA65_RS03760 0.85 -0.6 795,755 - DZA65_RS03760 0.85 -0.1 795,755 - DZA65_RS03760 0.85 -0.8 795,755 - DZA65_RS03760 0.85 -0.6 795,755 - DZA65_RS03760 0.85 +0.3 795,853 + +0.5 795,853 + +0.3 795,853 + -1.4 795,853 + -0.0 795,853 + -1.4 795,853 + -0.6 795,853 + -0.2 795,853 + -1.3 795,854 - +0.3 795,854 - +0.2 795,854 - +0.1 795,854 - -0.6 795,854 - +0.5 795,854 - +0.9 795,854 - -0.6 795,854 - +0.5 795,981 + -0.9 795,981 + -1.3 795,982 - -0.6 796,023 - -0.4 796,053 + +0.2 796,249 + DZA65_RS03765 0.10 -0.2 796,249 + DZA65_RS03765 0.10 +0.6 796,250 - DZA65_RS03765 0.10 -0.4 796,250 - DZA65_RS03765 0.10 -0.0 796,250 - DZA65_RS03765 0.10 +1.4 796,250 - DZA65_RS03765 0.10 -0.1 796,250 - DZA65_RS03765 0.10 -0.3 796,250 - +0.2 796,250 - DZA65_RS03765 0.10 -0.9 796,713 + DZA65_RS03765 0.39 -0.4 796,713 + DZA65_RS03765 0.39 -1.3 796,713 + DZA65_RS03765 0.39 -0.1 796,714 - DZA65_RS03765 0.39 -1.4 796,714 - DZA65_RS03765 0.39 -0.8 796,714 - DZA65_RS03765 0.39 +0.8 796,714 - DZA65_RS03765 0.39 -0.2 796,714 - DZA65_RS03765 0.39 +0.3 796,788 + DZA65_RS03765 0.44 -1.6 796,788 + DZA65_RS03765 0.44 +0.2 796,789 - DZA65_RS03765 0.44 +0.4 796,805 + DZA65_RS03765 0.45 +0.2 796,805 + DZA65_RS03765 0.45 -1.2 796,805 + DZA65_RS03765 0.45 +0.4 796,805 + DZA65_RS03765 0.45 +1.2 796,806 - DZA65_RS03765 0.45 -0.1 796,806 - DZA65_RS03765 0.45 +0.6 796,806 - DZA65_RS03765 0.45 +0.6 796,806 - DZA65_RS03765 0.45 +0.7 796,807 + DZA65_RS03765 0.45 +0.2 796,807 + DZA65_RS03765 0.45 -0.9 796,807 + DZA65_RS03765 0.45 +1.2 796,807 + DZA65_RS03765 0.45 +0.2 796,807 + DZA65_RS03765 0.45 +0.2 796,807 + DZA65_RS03765 0.45 +2.8 796,807 + DZA65_RS03765 0.45 -1.0 796,807 + DZA65_RS03765 0.45 +0.3 796,807 + DZA65_RS03765 0.45 -1.2 796,807 + DZA65_RS03765 0.45 -0.1 796,807 + DZA65_RS03765 0.45 -1.8 796,807 + DZA65_RS03765 0.45 +0.8 796,807 + DZA65_RS03765 0.45 -0.0 796,807 + DZA65_RS03765 0.45 +0.7 796,807 + DZA65_RS03765 0.45 +1.5 796,808 - DZA65_RS03765 0.45 -0.4 796,808 - DZA65_RS03765 0.45 -1.1 796,808 - DZA65_RS03765 0.45 +0.9 796,808 - DZA65_RS03765 0.45 -0.4 796,808 - DZA65_RS03765 0.45 -0.2 796,808 - +1.8 796,808 - DZA65_RS03765 0.45 +0.1 796,808 - DZA65_RS03765 0.45 -0.4 796,808 - DZA65_RS03765 0.45 -0.6 796,808 - DZA65_RS03765 0.45 -0.2 796,808 - DZA65_RS03765 0.45 -0.3 796,808 - DZA65_RS03765 0.45 +0.2 796,808 - DZA65_RS03765 0.45 -0.2 796,808 - DZA65_RS03765 0.45 +0.9 796,819 + DZA65_RS03765 0.46 -0.8 796,819 + DZA65_RS03765 0.46 +0.4 796,820 - DZA65_RS03765 0.46 +0.3 796,820 - DZA65_RS03765 0.46 +0.9 796,820 - DZA65_RS03765 0.46 -1.3 796,851 - DZA65_RS03765 0.48 -1.4 796,851 - DZA65_RS03765 0.48 -0.1 796,851 - DZA65_RS03765 0.48 -0.5 796,851 - DZA65_RS03765 0.48 -0.6 796,904 - DZA65_RS03765 0.51 -0.3 797,052 - DZA65_RS03765 0.60 +0.2 797,052 - DZA65_RS03765 0.60 +0.2 797,052 - DZA65_RS03765 0.60 -0.2 797,096 + DZA65_RS03765 0.63 -0.4 797,096 + DZA65_RS03765 0.63 -1.0 797,096 + DZA65_RS03765 0.63 -1.9 797,097 - DZA65_RS03765 0.63 -0.2 797,097 - DZA65_RS03765 0.63 +0.6 797,097 - DZA65_RS03765 0.63 +0.0 797,097 - DZA65_RS03765 0.63 +0.4 797,232 + DZA65_RS03765 0.72 +0.2 797,232 + DZA65_RS03765 0.72 +0.8 797,233 - DZA65_RS03765 0.72 +0.1 797,233 - DZA65_RS03765 0.72 +0.8 797,233 - DZA65_RS03765 0.72 +0.4 797,236 - DZA65_RS03765 0.72 +1.2 797,236 - DZA65_RS03765 0.72 -0.3 797,236 - DZA65_RS03765 0.72 -0.1 797,248 + DZA65_RS03765 0.73 +0.3 797,248 + DZA65_RS03765 0.73 -0.7 797,249 - +0.8 797,249 - DZA65_RS03765 0.73 -0.4 797,249 - DZA65_RS03765 0.73 +0.5 797,249 - DZA65_RS03765 0.73 +0.2 797,431 + DZA65_RS03765 0.84 -0.4 797,431 + DZA65_RS03765 0.84 -0.2 797,431 + DZA65_RS03765 0.84 -1.2 797,431 + DZA65_RS03765 0.84 -0.1 797,432 - DZA65_RS03765 0.84 +0.4 797,432 - DZA65_RS03765 0.84 +1.2 797,571 + -0.6 797,572 - -0.1 797,572 - -0.3 797,572 - -0.6 797,572 - -0.8 797,572 - +0.7 797,572 - -2.2 797,572 - -0.5 797,572 - -0.1 797,644 + +0.6 797,645 - +0.5 797,648 + -0.3 797,648 + -1.4 797,648 + +1.2 797,648 + -0.1 797,648 + -1.6 797,648 + +0.1 797,648 + +0.4 797,648 + +0.2 797,648 + -0.5 797,648 + -1.1 797,648 + -1.0 797,649 - +0.0 797,649 - +1.2 797,649 - -0.2 797,649 - -0.2 797,649 - -0.4 797,649 - -1.0 797,649 - -1.0 797,649 - +1.6 797,649 - -0.2 797,764 - +0.2 797,764 - -0.0 797,928 + DZA65_RS03770 0.22 +0.2 798,041 + DZA65_RS03770 0.32 -1.5 798,041 + DZA65_RS03770 0.32 +0.8 798,041 + DZA65_RS03770 0.32 -0.8 798,041 + DZA65_RS03770 0.32 +0.2 798,042 - DZA65_RS03770 0.32 -0.5 798,042 - DZA65_RS03770 0.32 -1.2 798,042 - +1.2 798,363 + DZA65_RS03770 0.59 +0.4 798,364 - DZA65_RS03770 0.60 -0.7 798,492 - DZA65_RS03770 0.71 -0.0 798,492 - DZA65_RS03770 0.71 +0.3 798,565 + DZA65_RS03770 0.77 +0.2 798,566 - DZA65_RS03770 0.77 -0.8 798,566 - DZA65_RS03770 0.77 -0.8
Or see this region's nucleotide sequence