Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS03660 and DZA65_RS03665 are separated by 248 nucleotides DZA65_RS03665 and DZA65_RS03670 are separated by 255 nucleotides
DZA65_RS03660: DZA65_RS03660 - sugar ABC transporter permease, at 770,402 to 771,292
_RS03660
DZA65_RS03665: DZA65_RS03665 - TOBE domain-containing protein, at 771,541 to 771,969
_RS03665
DZA65_RS03670: DZA65_RS03670 - kdo(2)-lipid IV(A) palmitoleoyltransferase, at 772,225 to 773,145
_RS03670
Position (kb) 771
772 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 770.541 kb on + strand, within DZA65_RS03660 at 770.541 kb on + strand, within DZA65_RS03660 at 770.541 kb on + strand, within DZA65_RS03660 at 770.541 kb on + strand, within DZA65_RS03660 at 770.542 kb on - strand, within DZA65_RS03660 at 770.542 kb on - strand, within DZA65_RS03660 at 770.542 kb on - strand, within DZA65_RS03660 at 770.542 kb on - strand, within DZA65_RS03660 at 770.542 kb on - strand, within DZA65_RS03660 at 770.542 kb on - strand, within DZA65_RS03660 at 770.616 kb on + strand, within DZA65_RS03660 at 770.616 kb on + strand, within DZA65_RS03660 at 770.616 kb on + strand, within DZA65_RS03660 at 770.616 kb on + strand, within DZA65_RS03660 at 770.616 kb on + strand, within DZA65_RS03660 at 770.617 kb on - strand, within DZA65_RS03660 at 770.617 kb on - strand, within DZA65_RS03660 at 770.617 kb on - strand, within DZA65_RS03660 at 770.632 kb on + strand, within DZA65_RS03660 at 770.772 kb on + strand, within DZA65_RS03660 at 770.772 kb on + strand, within DZA65_RS03660 at 770.772 kb on + strand, within DZA65_RS03660 at 770.772 kb on + strand, within DZA65_RS03660 at 770.772 kb on + strand, within DZA65_RS03660 at 770.772 kb on + strand, within DZA65_RS03660 at 770.772 kb on + strand, within DZA65_RS03660 at 770.772 kb on + strand, within DZA65_RS03660 at 770.772 kb on + strand, within DZA65_RS03660 at 770.772 kb on + strand, within DZA65_RS03660 at 770.772 kb on + strand, within DZA65_RS03660 at 770.772 kb on + strand, within DZA65_RS03660 at 770.772 kb on + strand, within DZA65_RS03660 at 770.772 kb on + strand, within DZA65_RS03660 at 770.772 kb on + strand, within DZA65_RS03660 at 770.772 kb on + strand, within DZA65_RS03660 at 770.772 kb on + strand, within DZA65_RS03660 at 770.772 kb on + strand, within DZA65_RS03660 at 770.773 kb on - strand, within DZA65_RS03660 at 770.773 kb on - strand, within DZA65_RS03660 at 770.773 kb on - strand, within DZA65_RS03660 at 770.773 kb on - strand, within DZA65_RS03660 at 770.773 kb on - strand, within DZA65_RS03660 at 770.773 kb on - strand, within DZA65_RS03660 at 770.773 kb on - strand, within DZA65_RS03660 at 770.773 kb on - strand, within DZA65_RS03660 at 770.773 kb on - strand, within DZA65_RS03660 at 770.773 kb on - strand, within DZA65_RS03660 at 770.773 kb on - strand, within DZA65_RS03660 at 770.773 kb on - strand, within DZA65_RS03660 at 770.773 kb on - strand, within DZA65_RS03660 at 770.773 kb on - strand, within DZA65_RS03660 at 770.773 kb on - strand, within DZA65_RS03660 at 770.773 kb on - strand, within DZA65_RS03660 at 770.773 kb on - strand, within DZA65_RS03660 at 770.773 kb on - strand, within DZA65_RS03660 at 770.841 kb on + strand at 770.841 kb on + strand, within DZA65_RS03660 at 770.841 kb on + strand, within DZA65_RS03660 at 770.841 kb on + strand, within DZA65_RS03660 at 770.841 kb on + strand, within DZA65_RS03660 at 770.841 kb on + strand, within DZA65_RS03660 at 770.842 kb on - strand, within DZA65_RS03660 at 770.842 kb on - strand, within DZA65_RS03660 at 770.842 kb on - strand, within DZA65_RS03660 at 770.842 kb on - strand, within DZA65_RS03660 at 770.842 kb on - strand, within DZA65_RS03660 at 770.848 kb on + strand, within DZA65_RS03660 at 770.848 kb on + strand, within DZA65_RS03660 at 770.848 kb on + strand, within DZA65_RS03660 at 770.849 kb on - strand, within DZA65_RS03660 at 770.849 kb on - strand, within DZA65_RS03660 at 770.849 kb on - strand, within DZA65_RS03660 at 770.849 kb on - strand, within DZA65_RS03660 at 770.853 kb on - strand, within DZA65_RS03660 at 770.895 kb on + strand, within DZA65_RS03660 at 770.895 kb on + strand, within DZA65_RS03660 at 770.896 kb on - strand, within DZA65_RS03660 at 770.898 kb on + strand, within DZA65_RS03660 at 770.898 kb on + strand, within DZA65_RS03660 at 770.929 kb on + strand, within DZA65_RS03660 at 770.929 kb on + strand, within DZA65_RS03660 at 770.929 kb on + strand, within DZA65_RS03660 at 770.929 kb on + strand, within DZA65_RS03660 at 770.930 kb on - strand, within DZA65_RS03660 at 770.930 kb on - strand, within DZA65_RS03660 at 771.079 kb on + strand, within DZA65_RS03660 at 771.079 kb on + strand, within DZA65_RS03660 at 771.080 kb on - strand, within DZA65_RS03660 at 771.081 kb on + strand, within DZA65_RS03660 at 771.081 kb on + strand, within DZA65_RS03660 at 771.081 kb on + strand, within DZA65_RS03660 at 771.081 kb on + strand, within DZA65_RS03660 at 771.081 kb on + strand, within DZA65_RS03660 at 771.081 kb on + strand, within DZA65_RS03660 at 771.081 kb on + strand, within DZA65_RS03660 at 771.081 kb on + strand, within DZA65_RS03660 at 771.081 kb on + strand, within DZA65_RS03660 at 771.081 kb on + strand, within DZA65_RS03660 at 771.081 kb on + strand, within DZA65_RS03660 at 771.081 kb on + strand, within DZA65_RS03660 at 771.082 kb on - strand, within DZA65_RS03660 at 771.082 kb on - strand, within DZA65_RS03660 at 771.082 kb on - strand, within DZA65_RS03660 at 771.082 kb on - strand, within DZA65_RS03660 at 771.082 kb on - strand, within DZA65_RS03660 at 771.082 kb on - strand, within DZA65_RS03660 at 771.082 kb on - strand, within DZA65_RS03660 at 771.082 kb on - strand, within DZA65_RS03660 at 771.082 kb on - strand, within DZA65_RS03660 at 771.082 kb on - strand, within DZA65_RS03660 at 771.082 kb on - strand, within DZA65_RS03660 at 771.082 kb on - strand, within DZA65_RS03660 at 771.082 kb on - strand, within DZA65_RS03660 at 771.082 kb on - strand, within DZA65_RS03660 at 771.082 kb on - strand, within DZA65_RS03660 at 771.082 kb on - strand, within DZA65_RS03660 at 771.092 kb on - strand, within DZA65_RS03660 at 771.179 kb on - strand, within DZA65_RS03660 at 771.202 kb on - strand, within DZA65_RS03660 at 771.225 kb on + strand at 771.225 kb on + strand at 771.298 kb on + strand at 771.298 kb on + strand at 771.298 kb on + strand at 771.330 kb on - strand at 771.342 kb on - strand at 771.342 kb on - strand at 771.342 kb on - strand at 771.355 kb on + strand at 771.355 kb on + strand at 771.355 kb on + strand at 771.355 kb on + strand at 771.355 kb on + strand at 771.356 kb on - strand at 771.356 kb on - strand at 771.356 kb on - strand at 771.356 kb on - strand at 771.356 kb on - strand at 771.356 kb on - strand at 771.371 kb on + strand at 771.371 kb on + strand at 771.372 kb on - strand at 771.421 kb on + strand at 771.422 kb on - strand at 771.422 kb on - strand at 771.426 kb on + strand at 771.426 kb on + strand at 771.448 kb on + strand at 771.449 kb on - strand at 771.449 kb on - strand at 771.492 kb on - strand at 771.492 kb on - strand at 771.493 kb on + strand at 771.493 kb on + strand at 771.494 kb on - strand at 771.494 kb on - strand at 771.494 kb on - strand at 771.494 kb on - strand at 771.497 kb on + strand at 771.497 kb on + strand at 771.498 kb on - strand at 771.498 kb on - strand at 771.498 kb on - strand at 771.498 kb on - strand at 771.511 kb on - strand at 771.526 kb on + strand at 771.527 kb on - strand at 771.540 kb on + strand at 771.540 kb on + strand at 771.540 kb on + strand at 771.540 kb on + strand at 771.540 kb on + strand at 771.540 kb on + strand at 771.540 kb on + strand at 771.540 kb on + strand at 771.541 kb on - strand at 771.541 kb on - strand at 771.541 kb on - strand at 771.541 kb on - strand at 771.541 kb on - strand at 771.541 kb on - strand at 771.541 kb on - strand at 771.541 kb on - strand at 771.541 kb on - strand at 771.541 kb on - strand at 771.620 kb on + strand at 771.648 kb on + strand, within DZA65_RS03665 at 771.834 kb on + strand, within DZA65_RS03665 at 771.835 kb on - strand, within DZA65_RS03665 at 771.835 kb on - strand, within DZA65_RS03665 at 771.887 kb on + strand, within DZA65_RS03665 at 771.888 kb on - strand, within DZA65_RS03665 at 772.008 kb on + strand at 772.008 kb on + strand at 772.009 kb on - strand at 772.009 kb on - strand at 772.096 kb on + strand at 772.096 kb on + strand at 772.097 kb on - strand at 772.097 kb on - strand at 772.180 kb on + strand at 772.180 kb on + strand at 772.180 kb on + strand at 772.181 kb on - strand at 772.181 kb on - strand at 772.181 kb on - strand at 772.181 kb on - strand at 772.181 kb on - strand at 772.181 kb on - strand at 772.188 kb on + strand at 772.370 kb on - strand, within DZA65_RS03670 at 772.550 kb on + strand, within DZA65_RS03670 at 772.620 kb on + strand, within DZA65_RS03670 at 772.620 kb on + strand, within DZA65_RS03670 at 772.621 kb on - strand, within DZA65_RS03670 at 772.621 kb on - strand, within DZA65_RS03670 at 772.695 kb on + strand, within DZA65_RS03670 at 772.695 kb on + strand, within DZA65_RS03670 at 772.696 kb on - strand, within DZA65_RS03670 at 772.899 kb on + strand, within DZA65_RS03670
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 770,541 + DZA65_RS03660 0.16 -0.1 770,541 + DZA65_RS03660 0.16 +0.1 770,541 + DZA65_RS03660 0.16 +0.1 770,541 + DZA65_RS03660 0.16 +0.2 770,542 - DZA65_RS03660 0.16 -0.4 770,542 - DZA65_RS03660 0.16 -1.4 770,542 - DZA65_RS03660 0.16 +1.6 770,542 - DZA65_RS03660 0.16 -1.3 770,542 - DZA65_RS03660 0.16 -0.6 770,542 - DZA65_RS03660 0.16 +0.1 770,616 + DZA65_RS03660 0.24 -0.1 770,616 + DZA65_RS03660 0.24 +0.5 770,616 + DZA65_RS03660 0.24 -0.2 770,616 + DZA65_RS03660 0.24 +0.5 770,616 + DZA65_RS03660 0.24 -1.7 770,617 - DZA65_RS03660 0.24 -3.1 770,617 - DZA65_RS03660 0.24 -1.8 770,617 - DZA65_RS03660 0.24 -1.0 770,632 + DZA65_RS03660 0.26 -0.6 770,772 + DZA65_RS03660 0.42 +0.9 770,772 + DZA65_RS03660 0.42 +0.6 770,772 + DZA65_RS03660 0.42 +0.4 770,772 + DZA65_RS03660 0.42 +1.3 770,772 + DZA65_RS03660 0.42 -1.3 770,772 + DZA65_RS03660 0.42 -0.8 770,772 + DZA65_RS03660 0.42 +1.4 770,772 + DZA65_RS03660 0.42 +0.5 770,772 + DZA65_RS03660 0.42 -0.0 770,772 + DZA65_RS03660 0.42 +0.4 770,772 + DZA65_RS03660 0.42 +0.1 770,772 + DZA65_RS03660 0.42 -0.4 770,772 + DZA65_RS03660 0.42 +0.2 770,772 + DZA65_RS03660 0.42 +1.0 770,772 + DZA65_RS03660 0.42 -0.4 770,772 + DZA65_RS03660 0.42 -0.0 770,772 + DZA65_RS03660 0.42 +0.3 770,772 + DZA65_RS03660 0.42 +0.4 770,773 - DZA65_RS03660 0.42 +1.2 770,773 - DZA65_RS03660 0.42 -0.4 770,773 - DZA65_RS03660 0.42 +0.6 770,773 - DZA65_RS03660 0.42 -0.4 770,773 - DZA65_RS03660 0.42 -0.7 770,773 - DZA65_RS03660 0.42 -0.5 770,773 - DZA65_RS03660 0.42 -0.8 770,773 - DZA65_RS03660 0.42 +0.6 770,773 - DZA65_RS03660 0.42 -0.5 770,773 - DZA65_RS03660 0.42 -1.0 770,773 - DZA65_RS03660 0.42 -1.1 770,773 - DZA65_RS03660 0.42 -1.1 770,773 - DZA65_RS03660 0.42 +0.1 770,773 - DZA65_RS03660 0.42 -0.6 770,773 - DZA65_RS03660 0.42 -0.2 770,773 - DZA65_RS03660 0.42 +0.4 770,773 - DZA65_RS03660 0.42 -0.6 770,773 - DZA65_RS03660 0.42 +0.3 770,841 + -0.1 770,841 + DZA65_RS03660 0.49 +0.3 770,841 + DZA65_RS03660 0.49 -1.4 770,841 + DZA65_RS03660 0.49 -0.8 770,841 + DZA65_RS03660 0.49 -0.8 770,841 + DZA65_RS03660 0.49 +0.3 770,842 - DZA65_RS03660 0.49 -0.1 770,842 - DZA65_RS03660 0.49 -2.0 770,842 - DZA65_RS03660 0.49 +1.6 770,842 - DZA65_RS03660 0.49 +0.3 770,842 - DZA65_RS03660 0.49 +1.8 770,848 + DZA65_RS03660 0.50 -1.8 770,848 + DZA65_RS03660 0.50 -0.2 770,848 + DZA65_RS03660 0.50 +0.5 770,849 - DZA65_RS03660 0.50 -1.1 770,849 - DZA65_RS03660 0.50 -0.4 770,849 - DZA65_RS03660 0.50 -0.7 770,849 - DZA65_RS03660 0.50 +1.2 770,853 - DZA65_RS03660 0.51 +0.7 770,895 + DZA65_RS03660 0.55 +0.8 770,895 + DZA65_RS03660 0.55 -0.1 770,896 - DZA65_RS03660 0.55 -0.5 770,898 + DZA65_RS03660 0.56 +0.3 770,898 + DZA65_RS03660 0.56 -0.2 770,929 + DZA65_RS03660 0.59 -0.6 770,929 + DZA65_RS03660 0.59 -2.0 770,929 + DZA65_RS03660 0.59 -0.4 770,929 + DZA65_RS03660 0.59 +1.4 770,930 - DZA65_RS03660 0.59 -0.6 770,930 - DZA65_RS03660 0.59 -0.4 771,079 + DZA65_RS03660 0.76 -1.4 771,079 + DZA65_RS03660 0.76 +0.2 771,080 - DZA65_RS03660 0.76 -0.1 771,081 + DZA65_RS03660 0.76 +0.5 771,081 + DZA65_RS03660 0.76 -0.0 771,081 + DZA65_RS03660 0.76 -0.4 771,081 + DZA65_RS03660 0.76 +0.1 771,081 + DZA65_RS03660 0.76 -0.4 771,081 + DZA65_RS03660 0.76 -0.4 771,081 + DZA65_RS03660 0.76 -0.6 771,081 + DZA65_RS03660 0.76 +0.9 771,081 + DZA65_RS03660 0.76 +0.8 771,081 + DZA65_RS03660 0.76 -0.6 771,081 + DZA65_RS03660 0.76 -0.2 771,081 + DZA65_RS03660 0.76 -1.1 771,082 - DZA65_RS03660 0.76 -0.4 771,082 - DZA65_RS03660 0.76 +1.3 771,082 - DZA65_RS03660 0.76 +0.1 771,082 - DZA65_RS03660 0.76 -0.4 771,082 - DZA65_RS03660 0.76 -1.5 771,082 - DZA65_RS03660 0.76 +0.4 771,082 - DZA65_RS03660 0.76 -1.4 771,082 - DZA65_RS03660 0.76 -1.0 771,082 - DZA65_RS03660 0.76 -0.7 771,082 - DZA65_RS03660 0.76 -0.2 771,082 - DZA65_RS03660 0.76 +1.9 771,082 - DZA65_RS03660 0.76 -0.2 771,082 - DZA65_RS03660 0.76 -0.4 771,082 - DZA65_RS03660 0.76 +0.4 771,082 - DZA65_RS03660 0.76 -0.5 771,082 - DZA65_RS03660 0.76 +0.5 771,092 - DZA65_RS03660 0.77 +0.2 771,179 - DZA65_RS03660 0.87 +0.4 771,202 - DZA65_RS03660 0.90 -0.7 771,225 + -1.6 771,225 + -0.6 771,298 + -0.3 771,298 + -0.1 771,298 + -1.0 771,330 - +0.2 771,342 - -0.5 771,342 - +0.2 771,342 - +1.5 771,355 + -0.4 771,355 + -0.6 771,355 + -0.2 771,355 + +0.2 771,355 + -1.0 771,356 - -0.6 771,356 - +0.7 771,356 - -1.6 771,356 - -1.8 771,356 - +0.8 771,356 - +0.6 771,371 + -0.7 771,371 + +0.2 771,372 - -1.1 771,421 + +0.2 771,422 - +0.8 771,422 - -0.4 771,426 + +0.0 771,426 + -0.5 771,448 + -2.2 771,449 - -0.8 771,449 - +0.3 771,492 - +0.6 771,492 - +0.6 771,493 + +0.5 771,493 + -1.8 771,494 - +0.4 771,494 - +0.4 771,494 - -1.2 771,494 - -0.6 771,497 + -0.6 771,497 + -1.9 771,498 - +1.6 771,498 - -0.3 771,498 - -0.1 771,498 - -0.4 771,511 - +1.2 771,526 + -0.4 771,527 - +0.4 771,540 + -1.6 771,540 + +1.2 771,540 + +0.1 771,540 + +0.5 771,540 + -0.1 771,540 + +0.7 771,540 + -0.4 771,540 + -0.6 771,541 - +0.7 771,541 - +1.2 771,541 - -0.9 771,541 - +0.1 771,541 - -0.6 771,541 - -0.5 771,541 - -0.6 771,541 - +1.6 771,541 - -0.4 771,541 - -0.3 771,620 + +1.6 771,648 + DZA65_RS03665 0.25 -0.5 771,834 + DZA65_RS03665 0.68 +0.3 771,835 - DZA65_RS03665 0.69 -2.0 771,835 - DZA65_RS03665 0.69 -0.1 771,887 + DZA65_RS03665 0.81 +0.7 771,888 - DZA65_RS03665 0.81 +0.3 772,008 + -0.4 772,008 + -0.2 772,009 - -1.2 772,009 - -0.4 772,096 + +0.2 772,096 + +1.6 772,097 - -1.2 772,097 - -1.0 772,180 + +0.0 772,180 + -0.2 772,180 + +0.2 772,181 - +0.3 772,181 - +0.2 772,181 - +0.2 772,181 - -0.1 772,181 - -1.0 772,181 - +1.9 772,188 + -0.8 772,370 - DZA65_RS03670 0.16 -0.6 772,550 + DZA65_RS03670 0.35 +0.4 772,620 + DZA65_RS03670 0.43 -0.6 772,620 + DZA65_RS03670 0.43 -0.7 772,621 - DZA65_RS03670 0.43 -0.5 772,621 - DZA65_RS03670 0.43 +0.4 772,695 + DZA65_RS03670 0.51 -1.6 772,695 + DZA65_RS03670 0.51 +1.8 772,696 - DZA65_RS03670 0.51 -1.3 772,899 + DZA65_RS03670 0.73 -0.8
Or see this region's nucleotide sequence