Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS03375 and DZA65_RS03380 overlap by 32 nucleotides DZA65_RS03380 and DZA65_RS03385 are separated by 153 nucleotides DZA65_RS03385 and DZA65_RS03390 are separated by 40 nucleotides
DZA65_RS03375: DZA65_RS03375 - ribosomal protein S18-alanine N-acetyltransferase, at 716,025 to 716,468
_RS03375
DZA65_RS03380: DZA65_RS03380 - DNA polymerase III subunit psi, at 716,437 to 716,856
_RS03380
DZA65_RS03385: DZA65_RS03385 - 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC, at 717,010 to 718,038
_RS03385
DZA65_RS03390: DZA65_RS03390 - aldo/keto reductase, at 718,079 to 719,074
_RS03390
Position (kb) 717
718
719 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 716.013 kb on + strand at 716.013 kb on + strand at 716.013 kb on + strand at 716.013 kb on + strand at 716.014 kb on - strand at 716.014 kb on - strand at 716.014 kb on - strand at 716.048 kb on + strand at 716.048 kb on + strand at 716.100 kb on + strand, within DZA65_RS03375 at 716.101 kb on - strand, within DZA65_RS03375 at 716.101 kb on - strand, within DZA65_RS03375 at 716.101 kb on - strand, within DZA65_RS03375 at 716.125 kb on + strand, within DZA65_RS03375 at 716.125 kb on + strand, within DZA65_RS03375 at 716.143 kb on - strand, within DZA65_RS03375 at 716.143 kb on - strand, within DZA65_RS03375 at 716.143 kb on - strand, within DZA65_RS03375 at 716.143 kb on - strand, within DZA65_RS03375 at 716.143 kb on - strand, within DZA65_RS03375 at 716.178 kb on + strand, within DZA65_RS03375 at 716.178 kb on + strand, within DZA65_RS03375 at 716.178 kb on + strand, within DZA65_RS03375 at 716.178 kb on + strand, within DZA65_RS03375 at 716.179 kb on - strand, within DZA65_RS03375 at 716.179 kb on - strand, within DZA65_RS03375 at 716.181 kb on - strand, within DZA65_RS03375 at 716.276 kb on + strand, within DZA65_RS03375 at 716.276 kb on + strand, within DZA65_RS03375 at 716.276 kb on + strand, within DZA65_RS03375 at 716.276 kb on + strand, within DZA65_RS03375 at 716.276 kb on + strand, within DZA65_RS03375 at 716.276 kb on + strand, within DZA65_RS03375 at 716.277 kb on - strand, within DZA65_RS03375 at 716.277 kb on - strand, within DZA65_RS03375 at 716.277 kb on - strand, within DZA65_RS03375 at 716.277 kb on - strand, within DZA65_RS03375 at 716.277 kb on - strand, within DZA65_RS03375 at 716.277 kb on - strand, within DZA65_RS03375 at 716.289 kb on + strand, within DZA65_RS03375 at 716.290 kb on - strand, within DZA65_RS03375 at 716.290 kb on - strand, within DZA65_RS03375 at 716.290 kb on - strand, within DZA65_RS03375 at 716.292 kb on + strand, within DZA65_RS03375 at 716.293 kb on - strand, within DZA65_RS03375 at 716.309 kb on - strand, within DZA65_RS03375 at 716.350 kb on + strand, within DZA65_RS03375 at 716.351 kb on - strand, within DZA65_RS03375 at 716.406 kb on + strand, within DZA65_RS03375 at 716.406 kb on + strand, within DZA65_RS03375 at 716.406 kb on + strand, within DZA65_RS03375 at 716.407 kb on - strand, within DZA65_RS03375 at 716.407 kb on - strand, within DZA65_RS03375 at 716.896 kb on - strand at 716.896 kb on - strand at 716.896 kb on - strand at 716.936 kb on - strand at 716.936 kb on - strand at 716.941 kb on - strand at 716.941 kb on - strand at 716.973 kb on + strand at 716.973 kb on + strand at 716.973 kb on + strand at 716.973 kb on + strand at 716.974 kb on - strand at 716.974 kb on - strand at 716.974 kb on - strand at 716.974 kb on - strand at 716.974 kb on - strand at 716.974 kb on - strand at 716.974 kb on - strand at 716.974 kb on - strand at 716.974 kb on - strand at 716.975 kb on + strand at 716.975 kb on + strand at 716.975 kb on + strand at 716.975 kb on + strand at 716.975 kb on + strand at 716.975 kb on + strand at 716.975 kb on + strand at 716.975 kb on + strand at 716.976 kb on - strand at 716.976 kb on - strand at 716.976 kb on - strand at 716.976 kb on - strand at 716.976 kb on - strand at 716.976 kb on - strand at 716.976 kb on - strand at 716.976 kb on - strand at 716.976 kb on - strand at 716.991 kb on + strand at 717.021 kb on - strand at 717.041 kb on + strand at 717.042 kb on - strand at 717.042 kb on - strand at 717.042 kb on - strand at 717.042 kb on - strand at 717.140 kb on + strand, within DZA65_RS03385 at 717.140 kb on + strand, within DZA65_RS03385 at 717.141 kb on - strand, within DZA65_RS03385 at 717.141 kb on - strand, within DZA65_RS03385 at 717.141 kb on - strand, within DZA65_RS03385 at 717.141 kb on - strand, within DZA65_RS03385 at 717.141 kb on - strand, within DZA65_RS03385 at 717.141 kb on - strand, within DZA65_RS03385 at 717.154 kb on + strand, within DZA65_RS03385 at 717.154 kb on + strand, within DZA65_RS03385 at 717.155 kb on - strand, within DZA65_RS03385 at 717.155 kb on - strand, within DZA65_RS03385 at 717.155 kb on - strand, within DZA65_RS03385 at 717.155 kb on - strand, within DZA65_RS03385 at 717.155 kb on - strand, within DZA65_RS03385 at 717.155 kb on - strand, within DZA65_RS03385 at 717.155 kb on - strand, within DZA65_RS03385 at 717.155 kb on - strand, within DZA65_RS03385 at 717.253 kb on + strand, within DZA65_RS03385 at 717.253 kb on + strand, within DZA65_RS03385 at 717.253 kb on + strand, within DZA65_RS03385 at 717.253 kb on + strand, within DZA65_RS03385 at 717.253 kb on + strand, within DZA65_RS03385 at 717.253 kb on + strand, within DZA65_RS03385 at 717.254 kb on - strand, within DZA65_RS03385 at 717.254 kb on - strand, within DZA65_RS03385 at 717.254 kb on - strand, within DZA65_RS03385 at 717.254 kb on - strand, within DZA65_RS03385 at 717.254 kb on - strand, within DZA65_RS03385 at 717.254 kb on - strand, within DZA65_RS03385 at 717.405 kb on + strand, within DZA65_RS03385 at 717.405 kb on + strand, within DZA65_RS03385 at 717.405 kb on + strand, within DZA65_RS03385 at 717.405 kb on + strand, within DZA65_RS03385 at 717.405 kb on + strand, within DZA65_RS03385 at 717.405 kb on + strand, within DZA65_RS03385 at 717.405 kb on + strand, within DZA65_RS03385 at 717.405 kb on + strand, within DZA65_RS03385 at 717.406 kb on - strand, within DZA65_RS03385 at 717.406 kb on - strand, within DZA65_RS03385 at 717.406 kb on - strand, within DZA65_RS03385 at 717.406 kb on - strand, within DZA65_RS03385 at 717.406 kb on - strand, within DZA65_RS03385 at 717.437 kb on - strand, within DZA65_RS03385 at 717.437 kb on - strand, within DZA65_RS03385 at 717.462 kb on + strand, within DZA65_RS03385 at 717.462 kb on + strand, within DZA65_RS03385 at 717.463 kb on - strand, within DZA65_RS03385 at 717.463 kb on - strand, within DZA65_RS03385 at 717.463 kb on - strand, within DZA65_RS03385 at 717.463 kb on - strand, within DZA65_RS03385 at 717.493 kb on + strand, within DZA65_RS03385 at 717.494 kb on - strand, within DZA65_RS03385 at 717.494 kb on - strand, within DZA65_RS03385 at 717.515 kb on + strand, within DZA65_RS03385 at 717.533 kb on + strand, within DZA65_RS03385 at 717.533 kb on + strand, within DZA65_RS03385 at 717.533 kb on + strand, within DZA65_RS03385 at 717.534 kb on - strand, within DZA65_RS03385 at 717.683 kb on + strand, within DZA65_RS03385 at 717.684 kb on - strand, within DZA65_RS03385 at 717.684 kb on - strand, within DZA65_RS03385 at 717.773 kb on - strand, within DZA65_RS03385 at 718.023 kb on + strand at 718.024 kb on - strand at 718.024 kb on - strand at 718.027 kb on - strand at 718.117 kb on - strand at 718.117 kb on - strand at 718.218 kb on + strand, within DZA65_RS03390 at 718.328 kb on - strand, within DZA65_RS03390 at 718.328 kb on - strand, within DZA65_RS03390 at 718.454 kb on + strand, within DZA65_RS03390 at 718.454 kb on + strand, within DZA65_RS03390 at 718.464 kb on + strand, within DZA65_RS03390 at 718.464 kb on + strand, within DZA65_RS03390 at 718.464 kb on + strand, within DZA65_RS03390 at 718.539 kb on + strand, within DZA65_RS03390 at 718.540 kb on - strand, within DZA65_RS03390 at 718.562 kb on - strand, within DZA65_RS03390 at 718.562 kb on - strand, within DZA65_RS03390 at 718.619 kb on - strand, within DZA65_RS03390 at 718.620 kb on + strand, within DZA65_RS03390 at 718.620 kb on + strand, within DZA65_RS03390 at 718.620 kb on + strand, within DZA65_RS03390 at 718.621 kb on - strand, within DZA65_RS03390 at 718.621 kb on - strand, within DZA65_RS03390 at 718.621 kb on - strand, within DZA65_RS03390 at 718.621 kb on - strand, within DZA65_RS03390 at 718.694 kb on - strand, within DZA65_RS03390 at 718.704 kb on + strand, within DZA65_RS03390 at 718.704 kb on + strand, within DZA65_RS03390 at 718.705 kb on - strand, within DZA65_RS03390 at 718.707 kb on + strand, within DZA65_RS03390 at 718.707 kb on + strand, within DZA65_RS03390 at 718.708 kb on - strand, within DZA65_RS03390 at 718.767 kb on + strand, within DZA65_RS03390 at 718.767 kb on + strand, within DZA65_RS03390 at 718.767 kb on + strand, within DZA65_RS03390 at 718.768 kb on - strand, within DZA65_RS03390 at 718.768 kb on - strand, within DZA65_RS03390 at 718.878 kb on - strand, within DZA65_RS03390 at 718.878 kb on - strand, within DZA65_RS03390 at 718.894 kb on + strand, within DZA65_RS03390 at 718.895 kb on - strand, within DZA65_RS03390 at 718.895 kb on - strand at 718.905 kb on + strand, within DZA65_RS03390 at 718.905 kb on + strand, within DZA65_RS03390 at 718.905 kb on + strand, within DZA65_RS03390 at 718.905 kb on + strand, within DZA65_RS03390 at 718.905 kb on + strand, within DZA65_RS03390 at 718.905 kb on + strand, within DZA65_RS03390 at 718.905 kb on + strand, within DZA65_RS03390 at 718.905 kb on + strand, within DZA65_RS03390 at 718.905 kb on + strand, within DZA65_RS03390 at 718.906 kb on - strand, within DZA65_RS03390 at 718.906 kb on - strand, within DZA65_RS03390 at 718.906 kb on - strand, within DZA65_RS03390 at 718.906 kb on - strand, within DZA65_RS03390 at 718.906 kb on - strand, within DZA65_RS03390 at 718.909 kb on + strand, within DZA65_RS03390 at 718.909 kb on + strand, within DZA65_RS03390 at 718.909 kb on + strand, within DZA65_RS03390 at 718.909 kb on + strand at 718.910 kb on - strand, within DZA65_RS03390 at 718.910 kb on - strand, within DZA65_RS03390 at 718.910 kb on - strand, within DZA65_RS03390 at 718.910 kb on - strand, within DZA65_RS03390 at 718.995 kb on + strand at 718.995 kb on + strand at 718.995 kb on + strand at 718.996 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 716,013 + -1.1 716,013 + -3.0 716,013 + +0.4 716,013 + +0.2 716,014 - +0.8 716,014 - +0.8 716,014 - -1.0 716,048 + -1.1 716,048 + -1.7 716,100 + DZA65_RS03375 0.17 +0.7 716,101 - DZA65_RS03375 0.17 -0.8 716,101 - DZA65_RS03375 0.17 -0.8 716,101 - DZA65_RS03375 0.17 -0.2 716,125 + DZA65_RS03375 0.23 -0.6 716,125 + DZA65_RS03375 0.23 +0.8 716,143 - DZA65_RS03375 0.27 -0.4 716,143 - DZA65_RS03375 0.27 -0.9 716,143 - DZA65_RS03375 0.27 +0.6 716,143 - DZA65_RS03375 0.27 -1.8 716,143 - DZA65_RS03375 0.27 -1.4 716,178 + DZA65_RS03375 0.34 +1.0 716,178 + DZA65_RS03375 0.34 +0.6 716,178 + DZA65_RS03375 0.34 +1.1 716,178 + DZA65_RS03375 0.34 +0.4 716,179 - DZA65_RS03375 0.35 -1.4 716,179 - DZA65_RS03375 0.35 +1.3 716,181 - DZA65_RS03375 0.35 -1.4 716,276 + DZA65_RS03375 0.57 +0.2 716,276 + DZA65_RS03375 0.57 +1.4 716,276 + DZA65_RS03375 0.57 +0.2 716,276 + DZA65_RS03375 0.57 -2.6 716,276 + DZA65_RS03375 0.57 +0.3 716,276 + DZA65_RS03375 0.57 -0.4 716,277 - DZA65_RS03375 0.57 -0.7 716,277 - DZA65_RS03375 0.57 -2.7 716,277 - DZA65_RS03375 0.57 +0.4 716,277 - DZA65_RS03375 0.57 +1.8 716,277 - DZA65_RS03375 0.57 -1.6 716,277 - DZA65_RS03375 0.57 +0.8 716,289 + DZA65_RS03375 0.59 +1.2 716,290 - DZA65_RS03375 0.60 +0.2 716,290 - DZA65_RS03375 0.60 +0.9 716,290 - DZA65_RS03375 0.60 -0.1 716,292 + DZA65_RS03375 0.60 -0.1 716,293 - DZA65_RS03375 0.60 -0.4 716,309 - DZA65_RS03375 0.64 +0.6 716,350 + DZA65_RS03375 0.73 +0.4 716,351 - DZA65_RS03375 0.73 -0.0 716,406 + DZA65_RS03375 0.86 +0.2 716,406 + DZA65_RS03375 0.86 -1.0 716,406 + DZA65_RS03375 0.86 -0.4 716,407 - DZA65_RS03375 0.86 +1.1 716,407 - DZA65_RS03375 0.86 -1.0 716,896 - -0.9 716,896 - -0.1 716,896 - -0.5 716,936 - +0.2 716,936 - -1.0 716,941 - +0.7 716,941 - +0.7 716,973 + +0.2 716,973 + -1.3 716,973 + +1.2 716,973 + -0.8 716,974 - +0.1 716,974 - -0.9 716,974 - +0.5 716,974 - +0.2 716,974 - -0.5 716,974 - +0.2 716,974 - +0.0 716,974 - +0.6 716,974 - -0.7 716,975 + -0.1 716,975 + -0.9 716,975 + -0.2 716,975 + +0.4 716,975 + -0.1 716,975 + -0.6 716,975 + +1.0 716,975 + -1.6 716,976 - -1.7 716,976 - +0.5 716,976 - -0.2 716,976 - +1.4 716,976 - -0.0 716,976 - +0.1 716,976 - +0.8 716,976 - +0.1 716,976 - -1.4 716,991 + -1.6 717,021 - -0.7 717,041 + -0.4 717,042 - +0.8 717,042 - -0.4 717,042 - -1.5 717,042 - -0.6 717,140 + DZA65_RS03385 0.13 -0.6 717,140 + DZA65_RS03385 0.13 -0.2 717,141 - DZA65_RS03385 0.13 -0.3 717,141 - DZA65_RS03385 0.13 +0.1 717,141 - DZA65_RS03385 0.13 -0.2 717,141 - DZA65_RS03385 0.13 -0.3 717,141 - DZA65_RS03385 0.13 +0.6 717,141 - DZA65_RS03385 0.13 +0.8 717,154 + DZA65_RS03385 0.14 -0.3 717,154 + DZA65_RS03385 0.14 -1.0 717,155 - DZA65_RS03385 0.14 -0.2 717,155 - DZA65_RS03385 0.14 +0.9 717,155 - DZA65_RS03385 0.14 +0.3 717,155 - DZA65_RS03385 0.14 -1.0 717,155 - DZA65_RS03385 0.14 -1.1 717,155 - DZA65_RS03385 0.14 -0.5 717,155 - DZA65_RS03385 0.14 -0.6 717,155 - DZA65_RS03385 0.14 -0.8 717,253 + DZA65_RS03385 0.24 +1.5 717,253 + DZA65_RS03385 0.24 -1.6 717,253 + DZA65_RS03385 0.24 -0.0 717,253 + DZA65_RS03385 0.24 -0.5 717,253 + DZA65_RS03385 0.24 +0.9 717,253 + DZA65_RS03385 0.24 -2.0 717,254 - DZA65_RS03385 0.24 -0.3 717,254 - DZA65_RS03385 0.24 -2.4 717,254 - DZA65_RS03385 0.24 +0.0 717,254 - DZA65_RS03385 0.24 +0.0 717,254 - DZA65_RS03385 0.24 +0.9 717,254 - DZA65_RS03385 0.24 -0.8 717,405 + DZA65_RS03385 0.38 -0.2 717,405 + DZA65_RS03385 0.38 +0.3 717,405 + DZA65_RS03385 0.38 -0.3 717,405 + DZA65_RS03385 0.38 -1.1 717,405 + DZA65_RS03385 0.38 -0.7 717,405 + DZA65_RS03385 0.38 +0.6 717,405 + DZA65_RS03385 0.38 -0.4 717,405 + DZA65_RS03385 0.38 -1.3 717,406 - DZA65_RS03385 0.38 -0.5 717,406 - DZA65_RS03385 0.38 -0.0 717,406 - DZA65_RS03385 0.38 +0.1 717,406 - DZA65_RS03385 0.38 -0.5 717,406 - DZA65_RS03385 0.38 -0.2 717,437 - DZA65_RS03385 0.41 -2.5 717,437 - DZA65_RS03385 0.41 -0.7 717,462 + DZA65_RS03385 0.44 -1.2 717,462 + DZA65_RS03385 0.44 +0.9 717,463 - DZA65_RS03385 0.44 -1.0 717,463 - DZA65_RS03385 0.44 +0.2 717,463 - DZA65_RS03385 0.44 -1.6 717,463 - DZA65_RS03385 0.44 -0.4 717,493 + DZA65_RS03385 0.47 -1.4 717,494 - DZA65_RS03385 0.47 -0.6 717,494 - DZA65_RS03385 0.47 -0.2 717,515 + DZA65_RS03385 0.49 -0.0 717,533 + DZA65_RS03385 0.51 +1.0 717,533 + DZA65_RS03385 0.51 -0.4 717,533 + DZA65_RS03385 0.51 +0.6 717,534 - DZA65_RS03385 0.51 +0.7 717,683 + DZA65_RS03385 0.65 -0.4 717,684 - DZA65_RS03385 0.66 -0.9 717,684 - DZA65_RS03385 0.66 -0.9 717,773 - DZA65_RS03385 0.74 -0.7 718,023 + +0.2 718,024 - -0.6 718,024 - -0.1 718,027 - +0.5 718,117 - -0.2 718,117 - +0.7 718,218 + DZA65_RS03390 0.14 +0.5 718,328 - DZA65_RS03390 0.25 -0.1 718,328 - DZA65_RS03390 0.25 -0.0 718,454 + DZA65_RS03390 0.38 -0.3 718,454 + DZA65_RS03390 0.38 +0.2 718,464 + DZA65_RS03390 0.39 -1.0 718,464 + DZA65_RS03390 0.39 -0.0 718,464 + DZA65_RS03390 0.39 -0.5 718,539 + DZA65_RS03390 0.46 -0.6 718,540 - DZA65_RS03390 0.46 -1.0 718,562 - DZA65_RS03390 0.48 +0.2 718,562 - DZA65_RS03390 0.48 -0.2 718,619 - DZA65_RS03390 0.54 +0.8 718,620 + DZA65_RS03390 0.54 +0.3 718,620 + DZA65_RS03390 0.54 -0.7 718,620 + DZA65_RS03390 0.54 +0.0 718,621 - DZA65_RS03390 0.54 -1.3 718,621 - DZA65_RS03390 0.54 -0.7 718,621 - DZA65_RS03390 0.54 -0.7 718,621 - DZA65_RS03390 0.54 -0.2 718,694 - DZA65_RS03390 0.62 -1.7 718,704 + DZA65_RS03390 0.63 +0.8 718,704 + DZA65_RS03390 0.63 -1.1 718,705 - DZA65_RS03390 0.63 +0.9 718,707 + DZA65_RS03390 0.63 -2.3 718,707 + DZA65_RS03390 0.63 +0.2 718,708 - DZA65_RS03390 0.63 -0.8 718,767 + DZA65_RS03390 0.69 -0.4 718,767 + DZA65_RS03390 0.69 +1.5 718,767 + DZA65_RS03390 0.69 +0.5 718,768 - DZA65_RS03390 0.69 -0.0 718,768 - DZA65_RS03390 0.69 +0.6 718,878 - DZA65_RS03390 0.80 -0.3 718,878 - DZA65_RS03390 0.80 +0.4 718,894 + DZA65_RS03390 0.82 +0.4 718,895 - DZA65_RS03390 0.82 +0.8 718,895 - -0.8 718,905 + DZA65_RS03390 0.83 -0.2 718,905 + DZA65_RS03390 0.83 +0.2 718,905 + DZA65_RS03390 0.83 -0.2 718,905 + DZA65_RS03390 0.83 -1.6 718,905 + DZA65_RS03390 0.83 +0.6 718,905 + DZA65_RS03390 0.83 -1.6 718,905 + DZA65_RS03390 0.83 +1.3 718,905 + DZA65_RS03390 0.83 -0.1 718,905 + DZA65_RS03390 0.83 +1.1 718,906 - DZA65_RS03390 0.83 -0.5 718,906 - DZA65_RS03390 0.83 -0.8 718,906 - DZA65_RS03390 0.83 -1.6 718,906 - DZA65_RS03390 0.83 -1.3 718,906 - DZA65_RS03390 0.83 -0.2 718,909 + DZA65_RS03390 0.83 -0.3 718,909 + DZA65_RS03390 0.83 +0.1 718,909 + DZA65_RS03390 0.83 +0.4 718,909 + +0.8 718,910 - DZA65_RS03390 0.83 -1.2 718,910 - DZA65_RS03390 0.83 -0.0 718,910 - DZA65_RS03390 0.83 -0.1 718,910 - DZA65_RS03390 0.83 -1.7 718,995 + -0.8 718,995 + -1.0 718,995 + +0.4 718,996 - -0.5
Or see this region's nucleotide sequence