Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS03370 and DZA65_RS03375 are separated by 271 nucleotides DZA65_RS03375 and DZA65_RS03380 overlap by 32 nucleotides DZA65_RS03380 and DZA65_RS03385 are separated by 153 nucleotides
DZA65_RS03370: DZA65_RS03370 - type I restriction endonuclease subunit R, at 712,649 to 715,753
_RS03370
DZA65_RS03375: DZA65_RS03375 - ribosomal protein S18-alanine N-acetyltransferase, at 716,025 to 716,468
_RS03375
DZA65_RS03380: DZA65_RS03380 - DNA polymerase III subunit psi, at 716,437 to 716,856
_RS03380
DZA65_RS03385: DZA65_RS03385 - 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC, at 717,010 to 718,038
_RS03385
Position (kb) 716
717 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 715.106 kb on + strand, within DZA65_RS03370 at 715.146 kb on + strand, within DZA65_RS03370 at 715.146 kb on + strand, within DZA65_RS03370 at 715.146 kb on + strand, within DZA65_RS03370 at 715.146 kb on + strand, within DZA65_RS03370 at 715.147 kb on - strand, within DZA65_RS03370 at 715.147 kb on - strand, within DZA65_RS03370 at 715.147 kb on - strand, within DZA65_RS03370 at 715.168 kb on - strand, within DZA65_RS03370 at 715.182 kb on + strand, within DZA65_RS03370 at 715.182 kb on + strand, within DZA65_RS03370 at 715.182 kb on + strand, within DZA65_RS03370 at 715.183 kb on - strand, within DZA65_RS03370 at 715.183 kb on - strand, within DZA65_RS03370 at 715.221 kb on + strand, within DZA65_RS03370 at 715.221 kb on + strand, within DZA65_RS03370 at 715.221 kb on + strand, within DZA65_RS03370 at 715.221 kb on + strand, within DZA65_RS03370 at 715.221 kb on + strand, within DZA65_RS03370 at 715.221 kb on + strand, within DZA65_RS03370 at 715.221 kb on + strand, within DZA65_RS03370 at 715.222 kb on - strand, within DZA65_RS03370 at 715.222 kb on - strand, within DZA65_RS03370 at 715.222 kb on - strand, within DZA65_RS03370 at 715.222 kb on - strand, within DZA65_RS03370 at 715.222 kb on - strand, within DZA65_RS03370 at 715.279 kb on + strand, within DZA65_RS03370 at 715.298 kb on - strand, within DZA65_RS03370 at 715.298 kb on - strand, within DZA65_RS03370 at 715.303 kb on + strand, within DZA65_RS03370 at 715.303 kb on + strand, within DZA65_RS03370 at 715.303 kb on + strand, within DZA65_RS03370 at 715.303 kb on + strand, within DZA65_RS03370 at 715.303 kb on + strand, within DZA65_RS03370 at 715.304 kb on - strand at 715.304 kb on - strand, within DZA65_RS03370 at 715.324 kb on + strand, within DZA65_RS03370 at 715.324 kb on + strand, within DZA65_RS03370 at 715.325 kb on - strand, within DZA65_RS03370 at 715.372 kb on + strand, within DZA65_RS03370 at 715.373 kb on - strand, within DZA65_RS03370 at 715.386 kb on - strand, within DZA65_RS03370 at 715.487 kb on + strand at 715.488 kb on - strand at 715.529 kb on + strand at 715.530 kb on - strand at 715.530 kb on - strand at 715.603 kb on + strand at 715.624 kb on + strand at 715.624 kb on + strand at 715.624 kb on + strand at 715.624 kb on + strand at 715.624 kb on + strand at 715.625 kb on - strand at 715.631 kb on - strand at 715.683 kb on + strand at 715.683 kb on + strand at 715.683 kb on + strand at 715.684 kb on - strand at 715.684 kb on - strand at 715.703 kb on + strand at 715.703 kb on + strand at 715.704 kb on - strand at 715.704 kb on - strand at 715.704 kb on - strand at 715.727 kb on - strand at 715.736 kb on - strand at 715.756 kb on + strand at 715.757 kb on - strand at 715.768 kb on + strand at 715.792 kb on - strand at 715.815 kb on + strand at 715.861 kb on + strand at 715.861 kb on + strand at 715.861 kb on + strand at 715.861 kb on + strand at 715.862 kb on - strand at 715.862 kb on - strand at 715.862 kb on - strand at 715.862 kb on - strand at 715.862 kb on - strand at 715.862 kb on - strand at 715.862 kb on - strand at 715.866 kb on + strand at 715.866 kb on + strand at 715.866 kb on + strand at 715.866 kb on + strand at 715.866 kb on + strand at 715.867 kb on - strand at 715.867 kb on - strand at 715.867 kb on - strand at 715.867 kb on - strand at 715.867 kb on - strand at 715.879 kb on + strand at 715.880 kb on - strand at 715.985 kb on - strand at 716.013 kb on + strand at 716.013 kb on + strand at 716.013 kb on + strand at 716.013 kb on + strand at 716.014 kb on - strand at 716.014 kb on - strand at 716.014 kb on - strand at 716.048 kb on + strand at 716.048 kb on + strand at 716.100 kb on + strand, within DZA65_RS03375 at 716.101 kb on - strand, within DZA65_RS03375 at 716.101 kb on - strand, within DZA65_RS03375 at 716.101 kb on - strand, within DZA65_RS03375 at 716.125 kb on + strand, within DZA65_RS03375 at 716.125 kb on + strand, within DZA65_RS03375 at 716.143 kb on - strand, within DZA65_RS03375 at 716.143 kb on - strand, within DZA65_RS03375 at 716.143 kb on - strand, within DZA65_RS03375 at 716.143 kb on - strand, within DZA65_RS03375 at 716.143 kb on - strand, within DZA65_RS03375 at 716.178 kb on + strand, within DZA65_RS03375 at 716.178 kb on + strand, within DZA65_RS03375 at 716.178 kb on + strand, within DZA65_RS03375 at 716.178 kb on + strand, within DZA65_RS03375 at 716.179 kb on - strand, within DZA65_RS03375 at 716.179 kb on - strand, within DZA65_RS03375 at 716.181 kb on - strand, within DZA65_RS03375 at 716.276 kb on + strand, within DZA65_RS03375 at 716.276 kb on + strand, within DZA65_RS03375 at 716.276 kb on + strand, within DZA65_RS03375 at 716.276 kb on + strand, within DZA65_RS03375 at 716.276 kb on + strand, within DZA65_RS03375 at 716.276 kb on + strand, within DZA65_RS03375 at 716.277 kb on - strand, within DZA65_RS03375 at 716.277 kb on - strand, within DZA65_RS03375 at 716.277 kb on - strand, within DZA65_RS03375 at 716.277 kb on - strand, within DZA65_RS03375 at 716.277 kb on - strand, within DZA65_RS03375 at 716.277 kb on - strand, within DZA65_RS03375 at 716.289 kb on + strand, within DZA65_RS03375 at 716.290 kb on - strand, within DZA65_RS03375 at 716.290 kb on - strand, within DZA65_RS03375 at 716.290 kb on - strand, within DZA65_RS03375 at 716.292 kb on + strand, within DZA65_RS03375 at 716.293 kb on - strand, within DZA65_RS03375 at 716.309 kb on - strand, within DZA65_RS03375 at 716.350 kb on + strand, within DZA65_RS03375 at 716.351 kb on - strand, within DZA65_RS03375 at 716.406 kb on + strand, within DZA65_RS03375 at 716.406 kb on + strand, within DZA65_RS03375 at 716.406 kb on + strand, within DZA65_RS03375 at 716.407 kb on - strand, within DZA65_RS03375 at 716.407 kb on - strand, within DZA65_RS03375 at 716.896 kb on - strand at 716.896 kb on - strand at 716.896 kb on - strand at 716.936 kb on - strand at 716.936 kb on - strand at 716.941 kb on - strand at 716.941 kb on - strand at 716.973 kb on + strand at 716.973 kb on + strand at 716.973 kb on + strand at 716.973 kb on + strand at 716.974 kb on - strand at 716.974 kb on - strand at 716.974 kb on - strand at 716.974 kb on - strand at 716.974 kb on - strand at 716.974 kb on - strand at 716.974 kb on - strand at 716.974 kb on - strand at 716.974 kb on - strand at 716.975 kb on + strand at 716.975 kb on + strand at 716.975 kb on + strand at 716.975 kb on + strand at 716.975 kb on + strand at 716.975 kb on + strand at 716.975 kb on + strand at 716.975 kb on + strand at 716.976 kb on - strand at 716.976 kb on - strand at 716.976 kb on - strand at 716.976 kb on - strand at 716.976 kb on - strand at 716.976 kb on - strand at 716.976 kb on - strand at 716.976 kb on - strand at 716.976 kb on - strand at 716.991 kb on + strand at 717.021 kb on - strand at 717.041 kb on + strand at 717.042 kb on - strand at 717.042 kb on - strand at 717.042 kb on - strand at 717.042 kb on - strand at 717.140 kb on + strand, within DZA65_RS03385 at 717.140 kb on + strand, within DZA65_RS03385 at 717.141 kb on - strand, within DZA65_RS03385 at 717.141 kb on - strand, within DZA65_RS03385 at 717.141 kb on - strand, within DZA65_RS03385 at 717.141 kb on - strand, within DZA65_RS03385 at 717.141 kb on - strand, within DZA65_RS03385 at 717.141 kb on - strand, within DZA65_RS03385 at 717.154 kb on + strand, within DZA65_RS03385 at 717.154 kb on + strand, within DZA65_RS03385 at 717.155 kb on - strand, within DZA65_RS03385 at 717.155 kb on - strand, within DZA65_RS03385 at 717.155 kb on - strand, within DZA65_RS03385 at 717.155 kb on - strand, within DZA65_RS03385 at 717.155 kb on - strand, within DZA65_RS03385 at 717.155 kb on - strand, within DZA65_RS03385 at 717.155 kb on - strand, within DZA65_RS03385 at 717.155 kb on - strand, within DZA65_RS03385 at 717.253 kb on + strand, within DZA65_RS03385 at 717.253 kb on + strand, within DZA65_RS03385 at 717.253 kb on + strand, within DZA65_RS03385 at 717.253 kb on + strand, within DZA65_RS03385 at 717.253 kb on + strand, within DZA65_RS03385 at 717.253 kb on + strand, within DZA65_RS03385 at 717.254 kb on - strand, within DZA65_RS03385 at 717.254 kb on - strand, within DZA65_RS03385 at 717.254 kb on - strand, within DZA65_RS03385 at 717.254 kb on - strand, within DZA65_RS03385 at 717.254 kb on - strand, within DZA65_RS03385 at 717.254 kb on - strand, within DZA65_RS03385 at 717.405 kb on + strand, within DZA65_RS03385 at 717.405 kb on + strand, within DZA65_RS03385 at 717.405 kb on + strand, within DZA65_RS03385 at 717.405 kb on + strand, within DZA65_RS03385 at 717.405 kb on + strand, within DZA65_RS03385 at 717.405 kb on + strand, within DZA65_RS03385 at 717.405 kb on + strand, within DZA65_RS03385 at 717.405 kb on + strand, within DZA65_RS03385 at 717.406 kb on - strand, within DZA65_RS03385 at 717.406 kb on - strand, within DZA65_RS03385 at 717.406 kb on - strand, within DZA65_RS03385 at 717.406 kb on - strand, within DZA65_RS03385 at 717.406 kb on - strand, within DZA65_RS03385 at 717.437 kb on - strand, within DZA65_RS03385 at 717.437 kb on - strand, within DZA65_RS03385 at 717.462 kb on + strand, within DZA65_RS03385 at 717.462 kb on + strand, within DZA65_RS03385 at 717.463 kb on - strand, within DZA65_RS03385 at 717.463 kb on - strand, within DZA65_RS03385 at 717.463 kb on - strand, within DZA65_RS03385 at 717.463 kb on - strand, within DZA65_RS03385
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 715,106 + DZA65_RS03370 0.79 -0.7 715,146 + DZA65_RS03370 0.80 -1.1 715,146 + DZA65_RS03370 0.80 -0.2 715,146 + DZA65_RS03370 0.80 -1.1 715,146 + DZA65_RS03370 0.80 +0.5 715,147 - DZA65_RS03370 0.80 -0.6 715,147 - DZA65_RS03370 0.80 +0.1 715,147 - DZA65_RS03370 0.80 +0.4 715,168 - DZA65_RS03370 0.81 -1.5 715,182 + DZA65_RS03370 0.82 -0.4 715,182 + DZA65_RS03370 0.82 +0.8 715,182 + DZA65_RS03370 0.82 -0.4 715,183 - DZA65_RS03370 0.82 -0.4 715,183 - DZA65_RS03370 0.82 -0.9 715,221 + DZA65_RS03370 0.83 -0.4 715,221 + DZA65_RS03370 0.83 +0.3 715,221 + DZA65_RS03370 0.83 -0.3 715,221 + DZA65_RS03370 0.83 -1.0 715,221 + DZA65_RS03370 0.83 -1.1 715,221 + DZA65_RS03370 0.83 +0.4 715,221 + DZA65_RS03370 0.83 -1.7 715,222 - DZA65_RS03370 0.83 +0.4 715,222 - DZA65_RS03370 0.83 +0.4 715,222 - DZA65_RS03370 0.83 +1.0 715,222 - DZA65_RS03370 0.83 +0.3 715,222 - DZA65_RS03370 0.83 +0.8 715,279 + DZA65_RS03370 0.85 -0.4 715,298 - DZA65_RS03370 0.85 +0.1 715,298 - DZA65_RS03370 0.85 -0.1 715,303 + DZA65_RS03370 0.85 -1.8 715,303 + DZA65_RS03370 0.85 +0.1 715,303 + DZA65_RS03370 0.85 -0.8 715,303 + DZA65_RS03370 0.85 -2.8 715,303 + DZA65_RS03370 0.85 -1.8 715,304 - +0.5 715,304 - DZA65_RS03370 0.86 -0.1 715,324 + DZA65_RS03370 0.86 -0.7 715,324 + DZA65_RS03370 0.86 -1.4 715,325 - DZA65_RS03370 0.86 +1.2 715,372 + DZA65_RS03370 0.88 +0.1 715,373 - DZA65_RS03370 0.88 +0.4 715,386 - DZA65_RS03370 0.88 +0.3 715,487 + -0.0 715,488 - +1.6 715,529 + -0.0 715,530 - -0.2 715,530 - -3.5 715,603 + -0.8 715,624 + -0.2 715,624 + -0.1 715,624 + -0.1 715,624 + +1.6 715,624 + +1.2 715,625 - -0.1 715,631 - -0.4 715,683 + -0.5 715,683 + -0.7 715,683 + +0.1 715,684 - +0.5 715,684 - +0.1 715,703 + +1.5 715,703 + -0.6 715,704 - +0.1 715,704 - -0.6 715,704 - -0.8 715,727 - -0.9 715,736 - -1.8 715,756 + -0.7 715,757 - -0.5 715,768 + -0.8 715,792 - +0.2 715,815 + +0.2 715,861 + +0.4 715,861 + +0.2 715,861 + +0.3 715,861 + +0.3 715,862 - -1.6 715,862 - -1.4 715,862 - +0.3 715,862 - +0.4 715,862 - -1.4 715,862 - +0.0 715,862 - -0.5 715,866 + -0.5 715,866 + +0.6 715,866 + -1.0 715,866 + -1.8 715,866 + -0.2 715,867 - +0.8 715,867 - -1.0 715,867 - +0.6 715,867 - -0.9 715,867 - +0.9 715,879 + +0.9 715,880 - -1.3 715,985 - -0.5 716,013 + -1.1 716,013 + -3.0 716,013 + +0.4 716,013 + +0.2 716,014 - +0.8 716,014 - +0.8 716,014 - -1.0 716,048 + -1.1 716,048 + -1.7 716,100 + DZA65_RS03375 0.17 +0.7 716,101 - DZA65_RS03375 0.17 -0.8 716,101 - DZA65_RS03375 0.17 -0.8 716,101 - DZA65_RS03375 0.17 -0.2 716,125 + DZA65_RS03375 0.23 -0.6 716,125 + DZA65_RS03375 0.23 +0.8 716,143 - DZA65_RS03375 0.27 -0.4 716,143 - DZA65_RS03375 0.27 -0.9 716,143 - DZA65_RS03375 0.27 +0.6 716,143 - DZA65_RS03375 0.27 -1.8 716,143 - DZA65_RS03375 0.27 -1.4 716,178 + DZA65_RS03375 0.34 +1.0 716,178 + DZA65_RS03375 0.34 +0.6 716,178 + DZA65_RS03375 0.34 +1.1 716,178 + DZA65_RS03375 0.34 +0.4 716,179 - DZA65_RS03375 0.35 -1.4 716,179 - DZA65_RS03375 0.35 +1.3 716,181 - DZA65_RS03375 0.35 -1.4 716,276 + DZA65_RS03375 0.57 +0.2 716,276 + DZA65_RS03375 0.57 +1.4 716,276 + DZA65_RS03375 0.57 +0.2 716,276 + DZA65_RS03375 0.57 -2.6 716,276 + DZA65_RS03375 0.57 +0.3 716,276 + DZA65_RS03375 0.57 -0.4 716,277 - DZA65_RS03375 0.57 -0.7 716,277 - DZA65_RS03375 0.57 -2.7 716,277 - DZA65_RS03375 0.57 +0.4 716,277 - DZA65_RS03375 0.57 +1.8 716,277 - DZA65_RS03375 0.57 -1.6 716,277 - DZA65_RS03375 0.57 +0.8 716,289 + DZA65_RS03375 0.59 +1.2 716,290 - DZA65_RS03375 0.60 +0.2 716,290 - DZA65_RS03375 0.60 +0.9 716,290 - DZA65_RS03375 0.60 -0.1 716,292 + DZA65_RS03375 0.60 -0.1 716,293 - DZA65_RS03375 0.60 -0.4 716,309 - DZA65_RS03375 0.64 +0.6 716,350 + DZA65_RS03375 0.73 +0.4 716,351 - DZA65_RS03375 0.73 -0.0 716,406 + DZA65_RS03375 0.86 +0.2 716,406 + DZA65_RS03375 0.86 -1.0 716,406 + DZA65_RS03375 0.86 -0.4 716,407 - DZA65_RS03375 0.86 +1.1 716,407 - DZA65_RS03375 0.86 -1.0 716,896 - -0.9 716,896 - -0.1 716,896 - -0.5 716,936 - +0.2 716,936 - -1.0 716,941 - +0.7 716,941 - +0.7 716,973 + +0.2 716,973 + -1.3 716,973 + +1.2 716,973 + -0.8 716,974 - +0.1 716,974 - -0.9 716,974 - +0.5 716,974 - +0.2 716,974 - -0.5 716,974 - +0.2 716,974 - +0.0 716,974 - +0.6 716,974 - -0.7 716,975 + -0.1 716,975 + -0.9 716,975 + -0.2 716,975 + +0.4 716,975 + -0.1 716,975 + -0.6 716,975 + +1.0 716,975 + -1.6 716,976 - -1.7 716,976 - +0.5 716,976 - -0.2 716,976 - +1.4 716,976 - -0.0 716,976 - +0.1 716,976 - +0.8 716,976 - +0.1 716,976 - -1.4 716,991 + -1.6 717,021 - -0.7 717,041 + -0.4 717,042 - +0.8 717,042 - -0.4 717,042 - -1.5 717,042 - -0.6 717,140 + DZA65_RS03385 0.13 -0.6 717,140 + DZA65_RS03385 0.13 -0.2 717,141 - DZA65_RS03385 0.13 -0.3 717,141 - DZA65_RS03385 0.13 +0.1 717,141 - DZA65_RS03385 0.13 -0.2 717,141 - DZA65_RS03385 0.13 -0.3 717,141 - DZA65_RS03385 0.13 +0.6 717,141 - DZA65_RS03385 0.13 +0.8 717,154 + DZA65_RS03385 0.14 -0.3 717,154 + DZA65_RS03385 0.14 -1.0 717,155 - DZA65_RS03385 0.14 -0.2 717,155 - DZA65_RS03385 0.14 +0.9 717,155 - DZA65_RS03385 0.14 +0.3 717,155 - DZA65_RS03385 0.14 -1.0 717,155 - DZA65_RS03385 0.14 -1.1 717,155 - DZA65_RS03385 0.14 -0.5 717,155 - DZA65_RS03385 0.14 -0.6 717,155 - DZA65_RS03385 0.14 -0.8 717,253 + DZA65_RS03385 0.24 +1.5 717,253 + DZA65_RS03385 0.24 -1.6 717,253 + DZA65_RS03385 0.24 -0.0 717,253 + DZA65_RS03385 0.24 -0.5 717,253 + DZA65_RS03385 0.24 +0.9 717,253 + DZA65_RS03385 0.24 -2.0 717,254 - DZA65_RS03385 0.24 -0.3 717,254 - DZA65_RS03385 0.24 -2.4 717,254 - DZA65_RS03385 0.24 +0.0 717,254 - DZA65_RS03385 0.24 +0.0 717,254 - DZA65_RS03385 0.24 +0.9 717,254 - DZA65_RS03385 0.24 -0.8 717,405 + DZA65_RS03385 0.38 -0.2 717,405 + DZA65_RS03385 0.38 +0.3 717,405 + DZA65_RS03385 0.38 -0.3 717,405 + DZA65_RS03385 0.38 -1.1 717,405 + DZA65_RS03385 0.38 -0.7 717,405 + DZA65_RS03385 0.38 +0.6 717,405 + DZA65_RS03385 0.38 -0.4 717,405 + DZA65_RS03385 0.38 -1.3 717,406 - DZA65_RS03385 0.38 -0.5 717,406 - DZA65_RS03385 0.38 -0.0 717,406 - DZA65_RS03385 0.38 +0.1 717,406 - DZA65_RS03385 0.38 -0.5 717,406 - DZA65_RS03385 0.38 -0.2 717,437 - DZA65_RS03385 0.41 -2.5 717,437 - DZA65_RS03385 0.41 -0.7 717,462 + DZA65_RS03385 0.44 -1.2 717,462 + DZA65_RS03385 0.44 +0.9 717,463 - DZA65_RS03385 0.44 -1.0 717,463 - DZA65_RS03385 0.44 +0.2 717,463 - DZA65_RS03385 0.44 -1.6 717,463 - DZA65_RS03385 0.44 -0.4
Or see this region's nucleotide sequence