Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS02690

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS02680 and DZA65_RS02685 are separated by 69 nucleotidesDZA65_RS02685 and DZA65_RS02690 are separated by 29 nucleotidesDZA65_RS02690 and DZA65_RS02700 are separated by 270 nucleotides DZA65_RS02680: DZA65_RS02680 - heavy metal translocating P-type ATPase, at 575,115 to 577,451 _RS02680 DZA65_RS02685: DZA65_RS02685 - Cd(II)/Pb(II)-responsive transcriptional regulator, at 577,521 to 577,952 _RS02685 DZA65_RS02690: DZA65_RS02690 - LacI family DNA-binding transcriptional regulator, at 577,982 to 579,004 _RS02690 DZA65_RS02700: DZA65_RS02700 - L-talarate/galactarate dehydratase, at 579,275 to 580,474 _RS02700 Position (kb) 577 578 579 580Strain fitness (log2 ratio) -2 -1 0 1 2at 577.048 kb on - strand, within DZA65_RS02680at 577.479 kb on + strandat 577.479 kb on + strandat 577.483 kb on - strandat 577.493 kb on + strandat 577.501 kb on - strandat 577.503 kb on - strandat 577.503 kb on - strandat 577.594 kb on + strand, within DZA65_RS02685at 577.614 kb on - strand, within DZA65_RS02685at 577.626 kb on + strand, within DZA65_RS02685at 577.626 kb on + strand, within DZA65_RS02685at 577.635 kb on + strand, within DZA65_RS02685at 577.635 kb on + strand, within DZA65_RS02685at 577.635 kb on + strand, within DZA65_RS02685at 577.636 kb on - strand, within DZA65_RS02685at 577.636 kb on - strand, within DZA65_RS02685at 577.636 kb on - strand, within DZA65_RS02685at 577.636 kb on - strand, within DZA65_RS02685at 577.636 kb on - strand, within DZA65_RS02685at 577.638 kb on + strand, within DZA65_RS02685at 577.638 kb on + strand, within DZA65_RS02685at 577.638 kb on + strand, within DZA65_RS02685at 577.638 kb on + strand, within DZA65_RS02685at 577.638 kb on + strand, within DZA65_RS02685at 577.638 kb on + strand, within DZA65_RS02685at 577.639 kb on - strand, within DZA65_RS02685at 577.639 kb on - strand, within DZA65_RS02685at 577.768 kb on + strand, within DZA65_RS02685at 577.768 kb on + strand, within DZA65_RS02685at 577.769 kb on - strand, within DZA65_RS02685at 577.813 kb on + strand, within DZA65_RS02685at 577.813 kb on + strand, within DZA65_RS02685at 577.814 kb on - strand, within DZA65_RS02685at 577.814 kb on - strand, within DZA65_RS02685at 577.814 kb on - strand, within DZA65_RS02685at 577.814 kb on - strand, within DZA65_RS02685at 577.814 kb on - strand, within DZA65_RS02685at 577.956 kb on + strandat 577.957 kb on - strandat 578.002 kb on + strandat 578.066 kb on + strandat 578.067 kb on - strandat 578.067 kb on - strandat 578.113 kb on + strand, within DZA65_RS02690at 578.114 kb on - strand, within DZA65_RS02690at 578.114 kb on - strand, within DZA65_RS02690at 578.114 kb on - strandat 578.114 kb on - strand, within DZA65_RS02690at 578.215 kb on + strand, within DZA65_RS02690at 578.453 kb on - strand, within DZA65_RS02690at 578.454 kb on + strand, within DZA65_RS02690at 578.454 kb on + strand, within DZA65_RS02690at 578.454 kb on + strand, within DZA65_RS02690at 578.454 kb on + strand, within DZA65_RS02690at 578.454 kb on + strand, within DZA65_RS02690at 578.454 kb on + strand, within DZA65_RS02690at 578.454 kb on + strand, within DZA65_RS02690at 578.454 kb on + strand, within DZA65_RS02690at 578.454 kb on + strand, within DZA65_RS02690at 578.454 kb on + strand, within DZA65_RS02690at 578.454 kb on + strand, within DZA65_RS02690at 578.454 kb on + strand, within DZA65_RS02690at 578.454 kb on + strand, within DZA65_RS02690at 578.454 kb on + strand, within DZA65_RS02690at 578.455 kb on - strand, within DZA65_RS02690at 578.455 kb on - strand, within DZA65_RS02690at 578.455 kb on - strand, within DZA65_RS02690at 578.455 kb on - strand, within DZA65_RS02690at 578.455 kb on - strand, within DZA65_RS02690at 578.455 kb on - strand, within DZA65_RS02690at 578.455 kb on - strand, within DZA65_RS02690at 578.455 kb on - strand, within DZA65_RS02690at 578.455 kb on - strand, within DZA65_RS02690at 578.455 kb on - strand, within DZA65_RS02690at 578.455 kb on - strand, within DZA65_RS02690at 578.455 kb on - strand, within DZA65_RS02690at 578.503 kb on + strand, within DZA65_RS02690at 578.667 kb on + strand, within DZA65_RS02690at 578.735 kb on - strand, within DZA65_RS02690at 578.785 kb on + strand, within DZA65_RS02690at 578.786 kb on - strand, within DZA65_RS02690at 578.786 kb on - strand, within DZA65_RS02690at 578.827 kb on + strand, within DZA65_RS02690at 578.827 kb on + strand, within DZA65_RS02690at 578.827 kb on + strand, within DZA65_RS02690at 578.827 kb on + strand, within DZA65_RS02690at 578.827 kb on + strand, within DZA65_RS02690at 578.828 kb on - strand, within DZA65_RS02690at 578.828 kb on - strand, within DZA65_RS02690at 578.829 kb on + strand, within DZA65_RS02690at 578.830 kb on - strand, within DZA65_RS02690at 578.998 kb on + strandat 578.998 kb on + strandat 578.999 kb on - strandat 579.024 kb on + strandat 579.024 kb on + strandat 579.024 kb on + strandat 579.024 kb on + strandat 579.024 kb on + strandat 579.025 kb on - strandat 579.025 kb on - strandat 579.025 kb on - strandat 579.025 kb on - strandat 579.050 kb on + strandat 579.050 kb on + strandat 579.051 kb on - strandat 579.051 kb on - strandat 579.111 kb on - strandat 579.113 kb on + strandat 579.189 kb on - strandat 579.195 kb on + strandat 579.195 kb on + strandat 579.224 kb on - strandat 579.309 kb on - strandat 579.309 kb on - strandat 579.309 kb on - strandat 579.367 kb on + strandat 579.367 kb on + strandat 579.368 kb on - strandat 579.420 kb on + strand, within DZA65_RS02700at 579.420 kb on + strand, within DZA65_RS02700at 579.421 kb on - strand, within DZA65_RS02700at 579.421 kb on - strand, within DZA65_RS02700at 579.460 kb on + strand, within DZA65_RS02700at 579.460 kb on + strand, within DZA65_RS02700at 579.460 kb on + strand, within DZA65_RS02700at 579.461 kb on - strand, within DZA65_RS02700at 579.461 kb on - strand, within DZA65_RS02700at 579.461 kb on - strand, within DZA65_RS02700at 579.464 kb on - strand, within DZA65_RS02700at 579.464 kb on - strand, within DZA65_RS02700at 579.513 kb on - strand, within DZA65_RS02700at 579.542 kb on + strand, within DZA65_RS02700at 579.542 kb on + strand, within DZA65_RS02700at 579.542 kb on + strand, within DZA65_RS02700at 579.542 kb on + strand, within DZA65_RS02700at 579.543 kb on - strand, within DZA65_RS02700at 579.543 kb on - strand, within DZA65_RS02700at 579.543 kb on - strand, within DZA65_RS02700at 579.543 kb on - strand, within DZA65_RS02700at 579.601 kb on + strand, within DZA65_RS02700at 579.602 kb on - strand, within DZA65_RS02700at 579.697 kb on + strand, within DZA65_RS02700at 579.767 kb on + strand, within DZA65_RS02700at 579.767 kb on + strand, within DZA65_RS02700at 579.767 kb on + strand, within DZA65_RS02700at 579.767 kb on + strand, within DZA65_RS02700at 579.768 kb on - strand, within DZA65_RS02700at 579.768 kb on - strand, within DZA65_RS02700at 579.768 kb on - strand, within DZA65_RS02700at 579.768 kb on - strand, within DZA65_RS02700at 579.768 kb on - strand, within DZA65_RS02700at 579.768 kb on - strand, within DZA65_RS02700at 579.768 kb on - strand, within DZA65_RS02700at 579.768 kb on - strand, within DZA65_RS02700at 579.810 kb on + strand, within DZA65_RS02700at 579.810 kb on + strand, within DZA65_RS02700at 579.811 kb on - strand, within DZA65_RS02700

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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577,048 - DZA65_RS02680 0.83 -0.2
577,479 + +0.6
577,479 + +1.3
577,483 - -2.6
577,493 + +0.4
577,501 - -0.1
577,503 - -0.1
577,503 - -1.2
577,594 + DZA65_RS02685 0.17 +0.5
577,614 - DZA65_RS02685 0.22 -1.1
577,626 + DZA65_RS02685 0.24 -1.3
577,626 + DZA65_RS02685 0.24 -0.5
577,635 + DZA65_RS02685 0.26 -0.6
577,635 + DZA65_RS02685 0.26 -0.3
577,635 + DZA65_RS02685 0.26 -0.5
577,636 - DZA65_RS02685 0.27 -2.7
577,636 - DZA65_RS02685 0.27 -0.0
577,636 - DZA65_RS02685 0.27 +0.3
577,636 - DZA65_RS02685 0.27 -2.7
577,636 - DZA65_RS02685 0.27 +0.8
577,638 + DZA65_RS02685 0.27 -1.8
577,638 + DZA65_RS02685 0.27 +0.1
577,638 + DZA65_RS02685 0.27 +0.8
577,638 + DZA65_RS02685 0.27 +0.1
577,638 + DZA65_RS02685 0.27 -0.7
577,638 + DZA65_RS02685 0.27 +1.3
577,639 - DZA65_RS02685 0.27 -0.2
577,639 - DZA65_RS02685 0.27 +0.8
577,768 + DZA65_RS02685 0.57 -0.6
577,768 + DZA65_RS02685 0.57 -0.1
577,769 - DZA65_RS02685 0.57 +0.7
577,813 + DZA65_RS02685 0.68 -0.5
577,813 + DZA65_RS02685 0.68 -0.2
577,814 - DZA65_RS02685 0.68 +1.0
577,814 - DZA65_RS02685 0.68 -0.2
577,814 - DZA65_RS02685 0.68 -0.6
577,814 - DZA65_RS02685 0.68 +0.3
577,814 - DZA65_RS02685 0.68 -0.3
577,956 + +2.1
577,957 - +0.1
578,002 + -0.4
578,066 + -0.7
578,067 - -0.3
578,067 - -2.1
578,113 + DZA65_RS02690 0.13 +0.4
578,114 - DZA65_RS02690 0.13 -0.4
578,114 - DZA65_RS02690 0.13 +0.8
578,114 - +1.3
578,114 - DZA65_RS02690 0.13 -1.2
578,215 + DZA65_RS02690 0.23 -0.8
578,453 - DZA65_RS02690 0.46 -1.4
578,454 + DZA65_RS02690 0.46 -0.7
578,454 + DZA65_RS02690 0.46 +0.7
578,454 + DZA65_RS02690 0.46 +1.3
578,454 + DZA65_RS02690 0.46 -0.3
578,454 + DZA65_RS02690 0.46 -0.7
578,454 + DZA65_RS02690 0.46 -0.1
578,454 + DZA65_RS02690 0.46 +0.0
578,454 + DZA65_RS02690 0.46 -0.7
578,454 + DZA65_RS02690 0.46 +0.3
578,454 + DZA65_RS02690 0.46 -1.1
578,454 + DZA65_RS02690 0.46 -0.3
578,454 + DZA65_RS02690 0.46 +0.9
578,454 + DZA65_RS02690 0.46 -2.1
578,454 + DZA65_RS02690 0.46 -0.4
578,455 - DZA65_RS02690 0.46 -0.4
578,455 - DZA65_RS02690 0.46 -0.3
578,455 - DZA65_RS02690 0.46 -0.7
578,455 - DZA65_RS02690 0.46 -0.3
578,455 - DZA65_RS02690 0.46 -0.0
578,455 - DZA65_RS02690 0.46 -1.6
578,455 - DZA65_RS02690 0.46 -0.0
578,455 - DZA65_RS02690 0.46 +0.3
578,455 - DZA65_RS02690 0.46 -0.9
578,455 - DZA65_RS02690 0.46 +0.4
578,455 - DZA65_RS02690 0.46 +1.3
578,455 - DZA65_RS02690 0.46 -0.7
578,503 + DZA65_RS02690 0.51 +0.5
578,667 + DZA65_RS02690 0.67 +0.4
578,735 - DZA65_RS02690 0.74 -0.3
578,785 + DZA65_RS02690 0.78 -2.2
578,786 - DZA65_RS02690 0.79 -1.1
578,786 - DZA65_RS02690 0.79 -2.1
578,827 + DZA65_RS02690 0.83 -0.2
578,827 + DZA65_RS02690 0.83 -1.0
578,827 + DZA65_RS02690 0.83 -0.5
578,827 + DZA65_RS02690 0.83 -0.6
578,827 + DZA65_RS02690 0.83 +0.2
578,828 - DZA65_RS02690 0.83 +0.3
578,828 - DZA65_RS02690 0.83 -0.4
578,829 + DZA65_RS02690 0.83 -1.1
578,830 - DZA65_RS02690 0.83 -0.7
578,998 + -0.7
578,998 + +0.0
578,999 - +0.5
579,024 + -0.1
579,024 + -0.7
579,024 + +0.3
579,024 + -0.0
579,024 + -1.6
579,025 - -0.4
579,025 - -0.6
579,025 - +1.3
579,025 - +0.3
579,050 + +0.7
579,050 + -0.3
579,051 - +0.1
579,051 - -0.7
579,111 - -0.9
579,113 + +0.8
579,189 - -0.7
579,195 + -1.6
579,195 + -0.1
579,224 - +0.1
579,309 - +1.3
579,309 - -0.5
579,309 - +0.3
579,367 + +0.8
579,367 + -0.1
579,368 - -0.1
579,420 + DZA65_RS02700 0.12 -0.5
579,420 + DZA65_RS02700 0.12 +0.3
579,421 - DZA65_RS02700 0.12 -0.2
579,421 - DZA65_RS02700 0.12 +0.4
579,460 + DZA65_RS02700 0.15 +0.1
579,460 + DZA65_RS02700 0.15 -0.5
579,460 + DZA65_RS02700 0.15 -0.2
579,461 - DZA65_RS02700 0.15 +0.5
579,461 - DZA65_RS02700 0.15 -0.1
579,461 - DZA65_RS02700 0.15 +0.4
579,464 - DZA65_RS02700 0.16 +0.3
579,464 - DZA65_RS02700 0.16 +0.3
579,513 - DZA65_RS02700 0.20 -0.5
579,542 + DZA65_RS02700 0.22 +0.3
579,542 + DZA65_RS02700 0.22 +0.0
579,542 + DZA65_RS02700 0.22 -0.2
579,542 + DZA65_RS02700 0.22 -0.7
579,543 - DZA65_RS02700 0.22 -0.4
579,543 - DZA65_RS02700 0.22 -1.2
579,543 - DZA65_RS02700 0.22 -0.0
579,543 - DZA65_RS02700 0.22 -0.8
579,601 + DZA65_RS02700 0.27 +1.1
579,602 - DZA65_RS02700 0.27 +0.3
579,697 + DZA65_RS02700 0.35 -0.1
579,767 + DZA65_RS02700 0.41 -0.1
579,767 + DZA65_RS02700 0.41 -2.3
579,767 + DZA65_RS02700 0.41 +0.3
579,767 + DZA65_RS02700 0.41 +0.7
579,768 - DZA65_RS02700 0.41 +0.0
579,768 - DZA65_RS02700 0.41 -0.9
579,768 - DZA65_RS02700 0.41 -0.5
579,768 - DZA65_RS02700 0.41 +0.3
579,768 - DZA65_RS02700 0.41 -0.3
579,768 - DZA65_RS02700 0.41 -1.0
579,768 - DZA65_RS02700 0.41 -0.2
579,768 - DZA65_RS02700 0.41 -0.4
579,810 + DZA65_RS02700 0.45 +0.4
579,810 + DZA65_RS02700 0.45 -1.1
579,811 - DZA65_RS02700 0.45 +0.1

Or see this region's nucleotide sequence