Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS01895 and DZA65_RS01900 are separated by 27 nucleotides DZA65_RS01900 and DZA65_RS01905 overlap by 8 nucleotides DZA65_RS01905 and DZA65_RS01910 are separated by 102 nucleotides DZA65_RS01910 and DZA65_RS01915 are separated by 54 nucleotides
DZA65_RS01895: DZA65_RS01895 - ABC transporter permease, at 417,455 to 418,459
_RS01895
DZA65_RS01900: DZA65_RS01900 - ABC transporter permease, at 418,487 to 419,308
_RS01900
DZA65_RS01905: DZA65_RS01905 - ABC transporter ATP-binding protein, at 419,301 to 420,896
_RS01905
DZA65_RS01910: DZA65_RS01910 - Hcp family type VI secretion system effector, at 420,999 to 421,478
_RS01910
DZA65_RS01915: DZA65_RS01915 - hypothetical protein, at 421,533 to 422,132
_RS01915
Position (kb) 419
420
421 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 418.313 kb on + strand, within DZA65_RS01895 at 418.313 kb on + strand, within DZA65_RS01895 at 418.313 kb on + strand, within DZA65_RS01895 at 418.313 kb on + strand, within DZA65_RS01895 at 418.313 kb on + strand, within DZA65_RS01895 at 418.313 kb on + strand, within DZA65_RS01895 at 418.313 kb on + strand, within DZA65_RS01895 at 418.313 kb on + strand, within DZA65_RS01895 at 418.313 kb on + strand, within DZA65_RS01895 at 418.313 kb on + strand, within DZA65_RS01895 at 418.313 kb on + strand, within DZA65_RS01895 at 418.313 kb on + strand, within DZA65_RS01895 at 418.313 kb on + strand, within DZA65_RS01895 at 418.314 kb on - strand, within DZA65_RS01895 at 418.314 kb on - strand, within DZA65_RS01895 at 418.314 kb on - strand, within DZA65_RS01895 at 418.314 kb on - strand, within DZA65_RS01895 at 418.314 kb on - strand, within DZA65_RS01895 at 418.314 kb on - strand, within DZA65_RS01895 at 418.314 kb on - strand, within DZA65_RS01895 at 418.314 kb on - strand, within DZA65_RS01895 at 418.314 kb on - strand, within DZA65_RS01895 at 418.314 kb on - strand, within DZA65_RS01895 at 418.314 kb on - strand, within DZA65_RS01895 at 418.314 kb on - strand, within DZA65_RS01895 at 418.314 kb on - strand, within DZA65_RS01895 at 418.314 kb on - strand, within DZA65_RS01895 at 418.314 kb on - strand, within DZA65_RS01895 at 418.314 kb on - strand, within DZA65_RS01895 at 418.314 kb on - strand at 418.314 kb on - strand, within DZA65_RS01895 at 418.325 kb on - strand, within DZA65_RS01895 at 418.343 kb on - strand, within DZA65_RS01895 at 418.343 kb on - strand, within DZA65_RS01895 at 418.343 kb on - strand, within DZA65_RS01895 at 418.385 kb on + strand at 418.386 kb on - strand at 418.386 kb on - strand at 418.396 kb on + strand at 418.397 kb on - strand at 418.397 kb on - strand at 418.397 kb on - strand at 418.397 kb on - strand at 418.478 kb on + strand at 418.479 kb on - strand at 418.484 kb on + strand at 418.484 kb on + strand at 418.484 kb on + strand at 418.484 kb on + strand at 418.484 kb on + strand at 418.484 kb on + strand at 418.484 kb on + strand at 418.484 kb on + strand at 418.484 kb on + strand at 418.484 kb on + strand at 418.484 kb on + strand at 418.484 kb on + strand at 418.484 kb on + strand at 418.485 kb on - strand at 418.485 kb on - strand at 418.485 kb on - strand at 418.485 kb on - strand at 418.485 kb on - strand at 418.485 kb on - strand at 418.485 kb on - strand at 418.485 kb on - strand at 418.485 kb on - strand at 418.485 kb on - strand at 418.485 kb on - strand at 418.485 kb on - strand at 418.485 kb on - strand at 418.485 kb on - strand at 418.485 kb on - strand at 418.485 kb on - strand at 418.485 kb on - strand at 418.485 kb on - strand at 418.485 kb on - strand at 418.578 kb on - strand, within DZA65_RS01900 at 418.691 kb on - strand, within DZA65_RS01900 at 418.873 kb on + strand, within DZA65_RS01900 at 418.873 kb on + strand, within DZA65_RS01900 at 418.902 kb on + strand, within DZA65_RS01900 at 418.903 kb on - strand, within DZA65_RS01900 at 418.924 kb on - strand, within DZA65_RS01900 at 418.924 kb on - strand, within DZA65_RS01900 at 418.924 kb on - strand, within DZA65_RS01900 at 418.924 kb on - strand, within DZA65_RS01900 at 419.075 kb on - strand, within DZA65_RS01900 at 419.265 kb on + strand at 419.265 kb on + strand at 419.281 kb on + strand at 419.282 kb on - strand at 419.384 kb on + strand at 419.384 kb on + strand at 419.384 kb on + strand at 419.471 kb on + strand, within DZA65_RS01905 at 419.472 kb on - strand, within DZA65_RS01905 at 419.580 kb on + strand, within DZA65_RS01905 at 419.580 kb on + strand, within DZA65_RS01905 at 419.580 kb on + strand, within DZA65_RS01905 at 419.580 kb on + strand, within DZA65_RS01905 at 419.580 kb on + strand, within DZA65_RS01905 at 419.581 kb on - strand, within DZA65_RS01905 at 419.581 kb on - strand, within DZA65_RS01905 at 419.581 kb on - strand, within DZA65_RS01905 at 419.581 kb on - strand, within DZA65_RS01905 at 419.844 kb on - strand, within DZA65_RS01905 at 419.928 kb on + strand, within DZA65_RS01905 at 419.928 kb on + strand, within DZA65_RS01905 at 419.928 kb on + strand, within DZA65_RS01905 at 419.929 kb on - strand, within DZA65_RS01905 at 419.929 kb on - strand, within DZA65_RS01905 at 419.929 kb on - strand, within DZA65_RS01905 at 419.929 kb on - strand, within DZA65_RS01905 at 420.048 kb on + strand, within DZA65_RS01905 at 420.048 kb on + strand, within DZA65_RS01905 at 420.048 kb on + strand, within DZA65_RS01905 at 420.048 kb on + strand, within DZA65_RS01905 at 420.048 kb on + strand, within DZA65_RS01905 at 420.048 kb on + strand, within DZA65_RS01905 at 420.049 kb on - strand, within DZA65_RS01905 at 420.049 kb on - strand, within DZA65_RS01905 at 420.049 kb on - strand, within DZA65_RS01905 at 420.064 kb on + strand, within DZA65_RS01905 at 420.065 kb on - strand, within DZA65_RS01905 at 420.065 kb on - strand, within DZA65_RS01905 at 420.065 kb on - strand, within DZA65_RS01905 at 420.293 kb on - strand, within DZA65_RS01905 at 420.560 kb on - strand, within DZA65_RS01905 at 420.597 kb on - strand, within DZA65_RS01905 at 420.693 kb on + strand, within DZA65_RS01905 at 420.693 kb on + strand, within DZA65_RS01905 at 420.694 kb on - strand, within DZA65_RS01905 at 420.694 kb on - strand, within DZA65_RS01905 at 420.716 kb on - strand, within DZA65_RS01905 at 420.820 kb on - strand at 420.894 kb on + strand at 420.895 kb on - strand at 420.925 kb on + strand at 420.925 kb on + strand at 420.925 kb on + strand at 420.925 kb on + strand at 420.925 kb on + strand at 420.925 kb on + strand at 420.925 kb on + strand at 420.925 kb on + strand at 420.926 kb on - strand at 420.926 kb on - strand at 420.926 kb on - strand at 420.926 kb on - strand at 420.926 kb on - strand at 420.927 kb on + strand at 420.927 kb on + strand at 420.927 kb on + strand at 420.927 kb on + strand at 420.927 kb on + strand at 420.928 kb on - strand at 420.928 kb on - strand at 420.928 kb on - strand at 420.928 kb on - strand at 420.928 kb on - strand at 420.928 kb on - strand at 420.928 kb on - strand at 420.928 kb on - strand at 420.939 kb on + strand at 420.940 kb on - strand at 420.968 kb on - strand at 420.973 kb on + strand at 420.973 kb on + strand at 420.977 kb on + strand at 420.977 kb on + strand at 420.981 kb on + strand at 420.998 kb on + strand at 420.998 kb on + strand at 421.011 kb on - strand at 421.011 kb on - strand at 421.114 kb on + strand, within DZA65_RS01910 at 421.115 kb on - strand, within DZA65_RS01910 at 421.115 kb on - strand, within DZA65_RS01910 at 421.115 kb on - strand, within DZA65_RS01910 at 421.121 kb on - strand, within DZA65_RS01910 at 421.139 kb on + strand, within DZA65_RS01910 at 421.139 kb on + strand, within DZA65_RS01910 at 421.140 kb on - strand, within DZA65_RS01910 at 421.217 kb on + strand, within DZA65_RS01910 at 421.218 kb on - strand, within DZA65_RS01910 at 421.223 kb on + strand, within DZA65_RS01910 at 421.226 kb on + strand, within DZA65_RS01910 at 421.250 kb on + strand, within DZA65_RS01910 at 421.358 kb on + strand, within DZA65_RS01910 at 421.384 kb on - strand, within DZA65_RS01910 at 421.395 kb on - strand, within DZA65_RS01910 at 421.449 kb on + strand at 421.450 kb on - strand at 421.451 kb on + strand at 421.452 kb on - strand at 421.454 kb on + strand at 421.454 kb on + strand at 421.454 kb on + strand at 421.455 kb on - strand at 421.455 kb on - strand at 421.517 kb on + strand at 421.519 kb on + strand at 421.519 kb on + strand at 421.521 kb on + strand at 421.634 kb on + strand, within DZA65_RS01915 at 421.634 kb on + strand, within DZA65_RS01915 at 421.635 kb on - strand, within DZA65_RS01915 at 421.635 kb on - strand, within DZA65_RS01915 at 421.710 kb on + strand, within DZA65_RS01915 at 421.710 kb on + strand, within DZA65_RS01915 at 421.710 kb on + strand, within DZA65_RS01915 at 421.710 kb on + strand, within DZA65_RS01915 at 421.710 kb on + strand, within DZA65_RS01915 at 421.710 kb on + strand, within DZA65_RS01915 at 421.710 kb on + strand, within DZA65_RS01915 at 421.711 kb on - strand, within DZA65_RS01915 at 421.711 kb on - strand, within DZA65_RS01915 at 421.711 kb on - strand, within DZA65_RS01915 at 421.711 kb on - strand, within DZA65_RS01915 at 421.711 kb on - strand, within DZA65_RS01915 at 421.711 kb on - strand, within DZA65_RS01915 at 421.713 kb on + strand, within DZA65_RS01915 at 421.714 kb on - strand, within DZA65_RS01915 at 421.714 kb on - strand, within DZA65_RS01915 at 421.745 kb on + strand, within DZA65_RS01915 at 421.821 kb on - strand, within DZA65_RS01915 at 421.821 kb on - strand, within DZA65_RS01915 at 421.821 kb on - strand, within DZA65_RS01915 at 421.821 kb on - strand, within DZA65_RS01915 at 421.854 kb on - strand, within DZA65_RS01915 at 421.880 kb on - strand, within DZA65_RS01915 at 421.895 kb on + strand, within DZA65_RS01915
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 418,313 + DZA65_RS01895 0.85 -0.1 418,313 + DZA65_RS01895 0.85 +0.3 418,313 + DZA65_RS01895 0.85 -0.9 418,313 + DZA65_RS01895 0.85 -0.3 418,313 + DZA65_RS01895 0.85 -0.7 418,313 + DZA65_RS01895 0.85 -2.8 418,313 + DZA65_RS01895 0.85 -1.8 418,313 + DZA65_RS01895 0.85 +0.6 418,313 + DZA65_RS01895 0.85 -0.7 418,313 + DZA65_RS01895 0.85 -2.1 418,313 + DZA65_RS01895 0.85 -0.4 418,313 + DZA65_RS01895 0.85 -0.5 418,313 + DZA65_RS01895 0.85 -0.4 418,314 - DZA65_RS01895 0.85 -1.4 418,314 - DZA65_RS01895 0.85 -0.1 418,314 - DZA65_RS01895 0.85 -0.4 418,314 - DZA65_RS01895 0.85 -1.2 418,314 - DZA65_RS01895 0.85 -0.1 418,314 - DZA65_RS01895 0.85 -0.4 418,314 - DZA65_RS01895 0.85 +0.1 418,314 - DZA65_RS01895 0.85 -0.9 418,314 - DZA65_RS01895 0.85 -0.5 418,314 - DZA65_RS01895 0.85 +1.6 418,314 - DZA65_RS01895 0.85 -0.0 418,314 - DZA65_RS01895 0.85 -0.4 418,314 - DZA65_RS01895 0.85 +0.6 418,314 - DZA65_RS01895 0.85 +0.8 418,314 - DZA65_RS01895 0.85 +0.2 418,314 - DZA65_RS01895 0.85 -0.3 418,314 - +0.7 418,314 - DZA65_RS01895 0.85 -0.6 418,325 - DZA65_RS01895 0.87 -0.5 418,343 - DZA65_RS01895 0.88 -2.4 418,343 - DZA65_RS01895 0.88 -1.0 418,343 - DZA65_RS01895 0.88 -1.1 418,385 + -0.9 418,386 - -1.7 418,386 - -0.1 418,396 + +1.0 418,397 - -0.3 418,397 - -0.4 418,397 - +0.8 418,397 - -0.5 418,478 + +0.8 418,479 - -1.6 418,484 + +1.3 418,484 + +0.2 418,484 + -1.4 418,484 + -0.2 418,484 + +0.6 418,484 + +0.1 418,484 + -2.0 418,484 + +0.8 418,484 + -0.3 418,484 + +1.3 418,484 + +0.9 418,484 + +0.4 418,484 + -0.7 418,485 - +0.3 418,485 - +0.1 418,485 - +0.3 418,485 - -2.2 418,485 - -1.4 418,485 - -0.2 418,485 - -0.1 418,485 - -1.5 418,485 - -1.2 418,485 - +0.5 418,485 - +0.0 418,485 - -0.1 418,485 - +0.3 418,485 - +0.5 418,485 - +1.6 418,485 - -0.9 418,485 - +0.7 418,485 - -0.1 418,485 - -0.7 418,578 - DZA65_RS01900 0.11 -0.2 418,691 - DZA65_RS01900 0.25 -0.2 418,873 + DZA65_RS01900 0.47 +1.6 418,873 + DZA65_RS01900 0.47 +0.3 418,902 + DZA65_RS01900 0.50 +1.3 418,903 - DZA65_RS01900 0.51 -1.5 418,924 - DZA65_RS01900 0.53 -0.7 418,924 - DZA65_RS01900 0.53 +0.3 418,924 - DZA65_RS01900 0.53 +0.3 418,924 - DZA65_RS01900 0.53 -0.6 419,075 - DZA65_RS01900 0.72 -0.6 419,265 + -0.9 419,265 + -0.2 419,281 + -0.0 419,282 - +0.1 419,384 + -0.0 419,384 + -0.4 419,384 + -0.4 419,471 + DZA65_RS01905 0.11 -0.4 419,472 - DZA65_RS01905 0.11 -0.7 419,580 + DZA65_RS01905 0.17 -0.2 419,580 + DZA65_RS01905 0.17 -0.6 419,580 + DZA65_RS01905 0.17 -0.3 419,580 + DZA65_RS01905 0.17 -0.0 419,580 + DZA65_RS01905 0.17 +0.5 419,581 - DZA65_RS01905 0.18 -2.0 419,581 - DZA65_RS01905 0.18 +0.3 419,581 - DZA65_RS01905 0.18 -0.3 419,581 - DZA65_RS01905 0.18 -0.4 419,844 - DZA65_RS01905 0.34 -1.0 419,928 + DZA65_RS01905 0.39 -0.3 419,928 + DZA65_RS01905 0.39 +0.9 419,928 + DZA65_RS01905 0.39 -0.5 419,929 - DZA65_RS01905 0.39 +0.4 419,929 - DZA65_RS01905 0.39 +0.3 419,929 - DZA65_RS01905 0.39 -0.4 419,929 - DZA65_RS01905 0.39 -0.3 420,048 + DZA65_RS01905 0.47 +0.5 420,048 + DZA65_RS01905 0.47 -2.7 420,048 + DZA65_RS01905 0.47 -0.4 420,048 + DZA65_RS01905 0.47 -0.3 420,048 + DZA65_RS01905 0.47 +2.0 420,048 + DZA65_RS01905 0.47 -1.7 420,049 - DZA65_RS01905 0.47 -0.0 420,049 - DZA65_RS01905 0.47 +1.0 420,049 - DZA65_RS01905 0.47 -0.1 420,064 + DZA65_RS01905 0.48 +1.0 420,065 - DZA65_RS01905 0.48 +0.2 420,065 - DZA65_RS01905 0.48 +0.9 420,065 - DZA65_RS01905 0.48 +1.0 420,293 - DZA65_RS01905 0.62 -0.2 420,560 - DZA65_RS01905 0.79 +1.6 420,597 - DZA65_RS01905 0.81 +1.0 420,693 + DZA65_RS01905 0.87 +1.0 420,693 + DZA65_RS01905 0.87 -0.9 420,694 - DZA65_RS01905 0.87 +0.6 420,694 - DZA65_RS01905 0.87 +0.3 420,716 - DZA65_RS01905 0.89 -1.1 420,820 - +0.1 420,894 + +1.7 420,895 - -0.2 420,925 + -0.8 420,925 + +1.1 420,925 + -2.3 420,925 + +0.1 420,925 + +0.2 420,925 + -1.0 420,925 + +2.3 420,925 + -0.5 420,926 - -0.8 420,926 - -1.5 420,926 - -0.6 420,926 - -0.1 420,926 - -1.8 420,927 + +0.4 420,927 + -1.5 420,927 + +0.4 420,927 + +0.4 420,927 + +0.3 420,928 - -0.1 420,928 - -0.2 420,928 - +1.5 420,928 - -1.3 420,928 - -0.6 420,928 - -0.3 420,928 - +0.9 420,928 - +0.0 420,939 + -0.4 420,940 - +0.8 420,968 - +0.3 420,973 + -0.5 420,973 + -1.1 420,977 + -0.5 420,977 + -1.0 420,981 + -0.0 420,998 + -0.1 420,998 + -0.1 421,011 - +0.1 421,011 - -0.2 421,114 + DZA65_RS01910 0.24 -0.3 421,115 - DZA65_RS01910 0.24 -0.7 421,115 - DZA65_RS01910 0.24 +0.6 421,115 - DZA65_RS01910 0.24 -0.2 421,121 - DZA65_RS01910 0.25 -0.1 421,139 + DZA65_RS01910 0.29 -0.6 421,139 + DZA65_RS01910 0.29 +0.2 421,140 - DZA65_RS01910 0.29 -1.9 421,217 + DZA65_RS01910 0.45 +0.2 421,218 - DZA65_RS01910 0.46 +0.5 421,223 + DZA65_RS01910 0.47 -0.4 421,226 + DZA65_RS01910 0.47 -0.7 421,250 + DZA65_RS01910 0.52 -0.0 421,358 + DZA65_RS01910 0.75 +1.3 421,384 - DZA65_RS01910 0.80 +0.1 421,395 - DZA65_RS01910 0.82 +1.3 421,449 + +0.4 421,450 - -0.5 421,451 + -1.2 421,452 - -0.1 421,454 + -1.1 421,454 + -0.8 421,454 + -0.9 421,455 - -2.6 421,455 - +0.3 421,517 + -0.7 421,519 + +0.4 421,519 + -0.4 421,521 + -0.0 421,634 + DZA65_RS01915 0.17 +1.0 421,634 + DZA65_RS01915 0.17 -0.0 421,635 - DZA65_RS01915 0.17 -0.6 421,635 - DZA65_RS01915 0.17 -0.5 421,710 + DZA65_RS01915 0.29 +0.4 421,710 + DZA65_RS01915 0.29 -1.2 421,710 + DZA65_RS01915 0.29 -1.6 421,710 + DZA65_RS01915 0.29 +0.3 421,710 + DZA65_RS01915 0.29 +0.3 421,710 + DZA65_RS01915 0.29 -1.2 421,710 + DZA65_RS01915 0.29 +0.6 421,711 - DZA65_RS01915 0.30 +0.4 421,711 - DZA65_RS01915 0.30 -1.0 421,711 - DZA65_RS01915 0.30 +0.2 421,711 - DZA65_RS01915 0.30 +0.8 421,711 - DZA65_RS01915 0.30 -0.3 421,711 - DZA65_RS01915 0.30 -0.3 421,713 + DZA65_RS01915 0.30 -0.2 421,714 - DZA65_RS01915 0.30 -0.1 421,714 - DZA65_RS01915 0.30 +0.4 421,745 + DZA65_RS01915 0.35 +0.2 421,821 - DZA65_RS01915 0.48 +0.4 421,821 - DZA65_RS01915 0.48 -0.6 421,821 - DZA65_RS01915 0.48 -1.8 421,821 - DZA65_RS01915 0.48 -0.2 421,854 - DZA65_RS01915 0.54 -0.6 421,880 - DZA65_RS01915 0.58 +0.0 421,895 + DZA65_RS01915 0.60 +0.3
Or see this region's nucleotide sequence