Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS01900

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS01895 and DZA65_RS01900 are separated by 27 nucleotidesDZA65_RS01900 and DZA65_RS01905 overlap by 8 nucleotides DZA65_RS01895: DZA65_RS01895 - ABC transporter permease, at 417,455 to 418,459 _RS01895 DZA65_RS01900: DZA65_RS01900 - ABC transporter permease, at 418,487 to 419,308 _RS01900 DZA65_RS01905: DZA65_RS01905 - ABC transporter ATP-binding protein, at 419,301 to 420,896 _RS01905 Position (kb) 418 419 420Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 417.555 kb on + strandat 417.555 kb on + strandat 417.556 kb on - strand, within DZA65_RS01895at 417.702 kb on - strand, within DZA65_RS01895at 417.702 kb on - strand, within DZA65_RS01895at 417.785 kb on + strand, within DZA65_RS01895at 417.820 kb on + strand, within DZA65_RS01895at 417.820 kb on + strand, within DZA65_RS01895at 417.855 kb on + strand, within DZA65_RS01895at 417.855 kb on + strandat 417.856 kb on - strand, within DZA65_RS01895at 417.856 kb on - strand, within DZA65_RS01895at 417.875 kb on + strand, within DZA65_RS01895at 417.884 kb on - strand, within DZA65_RS01895at 417.884 kb on - strand, within DZA65_RS01895at 417.901 kb on - strand, within DZA65_RS01895at 417.953 kb on + strand, within DZA65_RS01895at 417.953 kb on + strand, within DZA65_RS01895at 417.953 kb on + strand, within DZA65_RS01895at 417.953 kb on + strand, within DZA65_RS01895at 417.953 kb on + strand, within DZA65_RS01895at 417.953 kb on + strand, within DZA65_RS01895at 417.954 kb on - strand, within DZA65_RS01895at 417.957 kb on + strand, within DZA65_RS01895at 417.957 kb on + strand, within DZA65_RS01895at 417.957 kb on + strand, within DZA65_RS01895at 417.958 kb on - strand, within DZA65_RS01895at 418.021 kb on + strand, within DZA65_RS01895at 418.021 kb on + strand, within DZA65_RS01895at 418.021 kb on + strand, within DZA65_RS01895at 418.021 kb on + strand, within DZA65_RS01895at 418.022 kb on - strandat 418.022 kb on - strand, within DZA65_RS01895at 418.022 kb on - strand, within DZA65_RS01895at 418.022 kb on - strand, within DZA65_RS01895at 418.093 kb on + strand, within DZA65_RS01895at 418.094 kb on - strand, within DZA65_RS01895at 418.102 kb on + strand, within DZA65_RS01895at 418.102 kb on + strand, within DZA65_RS01895at 418.102 kb on + strand, within DZA65_RS01895at 418.102 kb on + strand, within DZA65_RS01895at 418.102 kb on + strand, within DZA65_RS01895at 418.102 kb on + strand, within DZA65_RS01895at 418.102 kb on + strand, within DZA65_RS01895at 418.103 kb on - strand, within DZA65_RS01895at 418.103 kb on - strand, within DZA65_RS01895at 418.103 kb on - strand, within DZA65_RS01895at 418.122 kb on + strand, within DZA65_RS01895at 418.123 kb on - strand, within DZA65_RS01895at 418.142 kb on + strand, within DZA65_RS01895at 418.142 kb on + strand, within DZA65_RS01895at 418.142 kb on + strand, within DZA65_RS01895at 418.143 kb on - strand, within DZA65_RS01895at 418.143 kb on - strand, within DZA65_RS01895at 418.143 kb on - strand, within DZA65_RS01895at 418.143 kb on - strand, within DZA65_RS01895at 418.143 kb on - strand, within DZA65_RS01895at 418.235 kb on - strand, within DZA65_RS01895at 418.253 kb on + strand, within DZA65_RS01895at 418.253 kb on + strand, within DZA65_RS01895at 418.254 kb on - strand, within DZA65_RS01895at 418.254 kb on - strand, within DZA65_RS01895at 418.254 kb on - strand, within DZA65_RS01895at 418.296 kb on - strand, within DZA65_RS01895at 418.313 kb on + strand, within DZA65_RS01895at 418.313 kb on + strand, within DZA65_RS01895at 418.313 kb on + strand, within DZA65_RS01895at 418.313 kb on + strand, within DZA65_RS01895at 418.313 kb on + strand, within DZA65_RS01895at 418.313 kb on + strand, within DZA65_RS01895at 418.313 kb on + strand, within DZA65_RS01895at 418.313 kb on + strand, within DZA65_RS01895at 418.313 kb on + strand, within DZA65_RS01895at 418.313 kb on + strand, within DZA65_RS01895at 418.313 kb on + strand, within DZA65_RS01895at 418.313 kb on + strand, within DZA65_RS01895at 418.313 kb on + strand, within DZA65_RS01895at 418.314 kb on - strand, within DZA65_RS01895at 418.314 kb on - strand, within DZA65_RS01895at 418.314 kb on - strand, within DZA65_RS01895at 418.314 kb on - strand, within DZA65_RS01895at 418.314 kb on - strand, within DZA65_RS01895at 418.314 kb on - strand, within DZA65_RS01895at 418.314 kb on - strand, within DZA65_RS01895at 418.314 kb on - strand, within DZA65_RS01895at 418.314 kb on - strand, within DZA65_RS01895at 418.314 kb on - strand, within DZA65_RS01895at 418.314 kb on - strand, within DZA65_RS01895at 418.314 kb on - strand, within DZA65_RS01895at 418.314 kb on - strand, within DZA65_RS01895at 418.314 kb on - strand, within DZA65_RS01895at 418.314 kb on - strand, within DZA65_RS01895at 418.314 kb on - strand, within DZA65_RS01895at 418.314 kb on - strandat 418.314 kb on - strand, within DZA65_RS01895at 418.325 kb on - strand, within DZA65_RS01895at 418.343 kb on - strand, within DZA65_RS01895at 418.343 kb on - strand, within DZA65_RS01895at 418.343 kb on - strand, within DZA65_RS01895at 418.385 kb on + strandat 418.386 kb on - strandat 418.386 kb on - strandat 418.396 kb on + strandat 418.397 kb on - strandat 418.397 kb on - strandat 418.397 kb on - strandat 418.397 kb on - strandat 418.478 kb on + strandat 418.479 kb on - strandat 418.484 kb on + strandat 418.484 kb on + strandat 418.484 kb on + strandat 418.484 kb on + strandat 418.484 kb on + strandat 418.484 kb on + strandat 418.484 kb on + strandat 418.484 kb on + strandat 418.484 kb on + strandat 418.484 kb on + strandat 418.484 kb on + strandat 418.484 kb on + strandat 418.484 kb on + strandat 418.485 kb on - strandat 418.485 kb on - strandat 418.485 kb on - strandat 418.485 kb on - strandat 418.485 kb on - strandat 418.485 kb on - strandat 418.485 kb on - strandat 418.485 kb on - strandat 418.485 kb on - strandat 418.485 kb on - strandat 418.485 kb on - strandat 418.485 kb on - strandat 418.485 kb on - strandat 418.485 kb on - strandat 418.485 kb on - strandat 418.485 kb on - strandat 418.485 kb on - strandat 418.485 kb on - strandat 418.485 kb on - strandat 418.578 kb on - strand, within DZA65_RS01900at 418.691 kb on - strand, within DZA65_RS01900at 418.873 kb on + strand, within DZA65_RS01900at 418.873 kb on + strand, within DZA65_RS01900at 418.902 kb on + strand, within DZA65_RS01900at 418.903 kb on - strand, within DZA65_RS01900at 418.924 kb on - strand, within DZA65_RS01900at 418.924 kb on - strand, within DZA65_RS01900at 418.924 kb on - strand, within DZA65_RS01900at 418.924 kb on - strand, within DZA65_RS01900at 419.075 kb on - strand, within DZA65_RS01900at 419.265 kb on + strandat 419.265 kb on + strandat 419.281 kb on + strandat 419.282 kb on - strandat 419.384 kb on + strandat 419.384 kb on + strandat 419.384 kb on + strandat 419.471 kb on + strand, within DZA65_RS01905at 419.472 kb on - strand, within DZA65_RS01905at 419.580 kb on + strand, within DZA65_RS01905at 419.580 kb on + strand, within DZA65_RS01905at 419.580 kb on + strand, within DZA65_RS01905at 419.580 kb on + strand, within DZA65_RS01905at 419.580 kb on + strand, within DZA65_RS01905at 419.581 kb on - strand, within DZA65_RS01905at 419.581 kb on - strand, within DZA65_RS01905at 419.581 kb on - strand, within DZA65_RS01905at 419.581 kb on - strand, within DZA65_RS01905at 419.844 kb on - strand, within DZA65_RS01905at 419.928 kb on + strand, within DZA65_RS01905at 419.928 kb on + strand, within DZA65_RS01905at 419.928 kb on + strand, within DZA65_RS01905at 419.929 kb on - strand, within DZA65_RS01905at 419.929 kb on - strand, within DZA65_RS01905at 419.929 kb on - strand, within DZA65_RS01905at 419.929 kb on - strand, within DZA65_RS01905at 420.048 kb on + strand, within DZA65_RS01905at 420.048 kb on + strand, within DZA65_RS01905at 420.048 kb on + strand, within DZA65_RS01905at 420.048 kb on + strand, within DZA65_RS01905at 420.048 kb on + strand, within DZA65_RS01905at 420.048 kb on + strand, within DZA65_RS01905at 420.049 kb on - strand, within DZA65_RS01905at 420.049 kb on - strand, within DZA65_RS01905at 420.049 kb on - strand, within DZA65_RS01905at 420.064 kb on + strand, within DZA65_RS01905at 420.065 kb on - strand, within DZA65_RS01905at 420.065 kb on - strand, within DZA65_RS01905at 420.065 kb on - strand, within DZA65_RS01905at 420.293 kb on - strand, within DZA65_RS01905

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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417,555 + +0.2
417,555 + -0.7
417,556 - DZA65_RS01895 0.10 -1.0
417,702 - DZA65_RS01895 0.25 -0.4
417,702 - DZA65_RS01895 0.25 -0.4
417,785 + DZA65_RS01895 0.33 +1.0
417,820 + DZA65_RS01895 0.36 +0.4
417,820 + DZA65_RS01895 0.36 +0.5
417,855 + DZA65_RS01895 0.40 -0.3
417,855 + +1.3
417,856 - DZA65_RS01895 0.40 -0.2
417,856 - DZA65_RS01895 0.40 +1.0
417,875 + DZA65_RS01895 0.42 -0.1
417,884 - DZA65_RS01895 0.43 -0.0
417,884 - DZA65_RS01895 0.43 -0.1
417,901 - DZA65_RS01895 0.44 +1.3
417,953 + DZA65_RS01895 0.50 -0.3
417,953 + DZA65_RS01895 0.50 -0.4
417,953 + DZA65_RS01895 0.50 +0.2
417,953 + DZA65_RS01895 0.50 -1.5
417,953 + DZA65_RS01895 0.50 -1.3
417,953 + DZA65_RS01895 0.50 +0.8
417,954 - DZA65_RS01895 0.50 -0.7
417,957 + DZA65_RS01895 0.50 -1.5
417,957 + DZA65_RS01895 0.50 +0.2
417,957 + DZA65_RS01895 0.50 -0.2
417,958 - DZA65_RS01895 0.50 +1.0
418,021 + DZA65_RS01895 0.56 -0.6
418,021 + DZA65_RS01895 0.56 +0.3
418,021 + DZA65_RS01895 0.56 -0.5
418,021 + DZA65_RS01895 0.56 +0.1
418,022 - +0.7
418,022 - DZA65_RS01895 0.56 -0.7
418,022 - DZA65_RS01895 0.56 -0.3
418,022 - DZA65_RS01895 0.56 -0.1
418,093 + DZA65_RS01895 0.63 +0.4
418,094 - DZA65_RS01895 0.64 -0.4
418,102 + DZA65_RS01895 0.64 -0.6
418,102 + DZA65_RS01895 0.64 -0.7
418,102 + DZA65_RS01895 0.64 +0.0
418,102 + DZA65_RS01895 0.64 -0.4
418,102 + DZA65_RS01895 0.64 -0.0
418,102 + DZA65_RS01895 0.64 +0.3
418,102 + DZA65_RS01895 0.64 -1.2
418,103 - DZA65_RS01895 0.64 -0.5
418,103 - DZA65_RS01895 0.64 -0.9
418,103 - DZA65_RS01895 0.64 +0.1
418,122 + DZA65_RS01895 0.66 -0.1
418,123 - DZA65_RS01895 0.66 -0.4
418,142 + DZA65_RS01895 0.68 -0.6
418,142 + DZA65_RS01895 0.68 +0.3
418,142 + DZA65_RS01895 0.68 -0.5
418,143 - DZA65_RS01895 0.68 +0.4
418,143 - DZA65_RS01895 0.68 +0.1
418,143 - DZA65_RS01895 0.68 -0.7
418,143 - DZA65_RS01895 0.68 -0.9
418,143 - DZA65_RS01895 0.68 +0.5
418,235 - DZA65_RS01895 0.78 +0.7
418,253 + DZA65_RS01895 0.79 +0.6
418,253 + DZA65_RS01895 0.79 +0.1
418,254 - DZA65_RS01895 0.80 -2.0
418,254 - DZA65_RS01895 0.80 -1.0
418,254 - DZA65_RS01895 0.80 -0.7
418,296 - DZA65_RS01895 0.84 -0.4
418,313 + DZA65_RS01895 0.85 -0.1
418,313 + DZA65_RS01895 0.85 +0.3
418,313 + DZA65_RS01895 0.85 -0.9
418,313 + DZA65_RS01895 0.85 -0.3
418,313 + DZA65_RS01895 0.85 -0.7
418,313 + DZA65_RS01895 0.85 -2.8
418,313 + DZA65_RS01895 0.85 -1.8
418,313 + DZA65_RS01895 0.85 +0.6
418,313 + DZA65_RS01895 0.85 -0.7
418,313 + DZA65_RS01895 0.85 -2.1
418,313 + DZA65_RS01895 0.85 -0.4
418,313 + DZA65_RS01895 0.85 -0.5
418,313 + DZA65_RS01895 0.85 -0.4
418,314 - DZA65_RS01895 0.85 -1.4
418,314 - DZA65_RS01895 0.85 -0.1
418,314 - DZA65_RS01895 0.85 -0.4
418,314 - DZA65_RS01895 0.85 -1.2
418,314 - DZA65_RS01895 0.85 -0.1
418,314 - DZA65_RS01895 0.85 -0.4
418,314 - DZA65_RS01895 0.85 +0.1
418,314 - DZA65_RS01895 0.85 -0.9
418,314 - DZA65_RS01895 0.85 -0.5
418,314 - DZA65_RS01895 0.85 +1.6
418,314 - DZA65_RS01895 0.85 -0.0
418,314 - DZA65_RS01895 0.85 -0.4
418,314 - DZA65_RS01895 0.85 +0.6
418,314 - DZA65_RS01895 0.85 +0.8
418,314 - DZA65_RS01895 0.85 +0.2
418,314 - DZA65_RS01895 0.85 -0.3
418,314 - +0.7
418,314 - DZA65_RS01895 0.85 -0.6
418,325 - DZA65_RS01895 0.87 -0.5
418,343 - DZA65_RS01895 0.88 -2.4
418,343 - DZA65_RS01895 0.88 -1.0
418,343 - DZA65_RS01895 0.88 -1.1
418,385 + -0.9
418,386 - -1.7
418,386 - -0.1
418,396 + +1.0
418,397 - -0.3
418,397 - -0.4
418,397 - +0.8
418,397 - -0.5
418,478 + +0.8
418,479 - -1.6
418,484 + +1.3
418,484 + +0.2
418,484 + -1.4
418,484 + -0.2
418,484 + +0.6
418,484 + +0.1
418,484 + -2.0
418,484 + +0.8
418,484 + -0.3
418,484 + +1.3
418,484 + +0.9
418,484 + +0.4
418,484 + -0.7
418,485 - +0.3
418,485 - +0.1
418,485 - +0.3
418,485 - -2.2
418,485 - -1.4
418,485 - -0.2
418,485 - -0.1
418,485 - -1.5
418,485 - -1.2
418,485 - +0.5
418,485 - +0.0
418,485 - -0.1
418,485 - +0.3
418,485 - +0.5
418,485 - +1.6
418,485 - -0.9
418,485 - +0.7
418,485 - -0.1
418,485 - -0.7
418,578 - DZA65_RS01900 0.11 -0.2
418,691 - DZA65_RS01900 0.25 -0.2
418,873 + DZA65_RS01900 0.47 +1.6
418,873 + DZA65_RS01900 0.47 +0.3
418,902 + DZA65_RS01900 0.50 +1.3
418,903 - DZA65_RS01900 0.51 -1.5
418,924 - DZA65_RS01900 0.53 -0.7
418,924 - DZA65_RS01900 0.53 +0.3
418,924 - DZA65_RS01900 0.53 +0.3
418,924 - DZA65_RS01900 0.53 -0.6
419,075 - DZA65_RS01900 0.72 -0.6
419,265 + -0.9
419,265 + -0.2
419,281 + -0.0
419,282 - +0.1
419,384 + -0.0
419,384 + -0.4
419,384 + -0.4
419,471 + DZA65_RS01905 0.11 -0.4
419,472 - DZA65_RS01905 0.11 -0.7
419,580 + DZA65_RS01905 0.17 -0.2
419,580 + DZA65_RS01905 0.17 -0.6
419,580 + DZA65_RS01905 0.17 -0.3
419,580 + DZA65_RS01905 0.17 -0.0
419,580 + DZA65_RS01905 0.17 +0.5
419,581 - DZA65_RS01905 0.18 -2.0
419,581 - DZA65_RS01905 0.18 +0.3
419,581 - DZA65_RS01905 0.18 -0.3
419,581 - DZA65_RS01905 0.18 -0.4
419,844 - DZA65_RS01905 0.34 -1.0
419,928 + DZA65_RS01905 0.39 -0.3
419,928 + DZA65_RS01905 0.39 +0.9
419,928 + DZA65_RS01905 0.39 -0.5
419,929 - DZA65_RS01905 0.39 +0.4
419,929 - DZA65_RS01905 0.39 +0.3
419,929 - DZA65_RS01905 0.39 -0.4
419,929 - DZA65_RS01905 0.39 -0.3
420,048 + DZA65_RS01905 0.47 +0.5
420,048 + DZA65_RS01905 0.47 -2.7
420,048 + DZA65_RS01905 0.47 -0.4
420,048 + DZA65_RS01905 0.47 -0.3
420,048 + DZA65_RS01905 0.47 +2.0
420,048 + DZA65_RS01905 0.47 -1.7
420,049 - DZA65_RS01905 0.47 -0.0
420,049 - DZA65_RS01905 0.47 +1.0
420,049 - DZA65_RS01905 0.47 -0.1
420,064 + DZA65_RS01905 0.48 +1.0
420,065 - DZA65_RS01905 0.48 +0.2
420,065 - DZA65_RS01905 0.48 +0.9
420,065 - DZA65_RS01905 0.48 +1.0
420,293 - DZA65_RS01905 0.62 -0.2

Or see this region's nucleotide sequence