Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS01890 and DZA65_RS01895 are separated by 10 nucleotides DZA65_RS01895 and DZA65_RS01900 are separated by 27 nucleotides DZA65_RS01900 and DZA65_RS01905 overlap by 8 nucleotides
DZA65_RS01890: DZA65_RS01890 - ABC transporter substrate-binding protein, at 415,903 to 417,444
_RS01890
DZA65_RS01895: DZA65_RS01895 - ABC transporter permease, at 417,455 to 418,459
_RS01895
DZA65_RS01900: DZA65_RS01900 - ABC transporter permease, at 418,487 to 419,308
_RS01900
DZA65_RS01905: DZA65_RS01905 - ABC transporter ATP-binding protein, at 419,301 to 420,896
_RS01905
Position (kb) 417
418
419 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 416.763 kb on + strand, within DZA65_RS01890 at 416.794 kb on + strand, within DZA65_RS01890 at 416.794 kb on + strand, within DZA65_RS01890 at 416.795 kb on - strand, within DZA65_RS01890 at 416.795 kb on - strand, within DZA65_RS01890 at 416.817 kb on + strand, within DZA65_RS01890 at 416.884 kb on + strand, within DZA65_RS01890 at 416.915 kb on - strand, within DZA65_RS01890 at 417.008 kb on + strand, within DZA65_RS01890 at 417.009 kb on - strand, within DZA65_RS01890 at 417.025 kb on + strand, within DZA65_RS01890 at 417.025 kb on + strand, within DZA65_RS01890 at 417.026 kb on - strand, within DZA65_RS01890 at 417.283 kb on + strand, within DZA65_RS01890 at 417.312 kb on + strand at 417.338 kb on - strand at 417.364 kb on - strand at 417.364 kb on - strand at 417.364 kb on - strand at 417.366 kb on + strand at 417.366 kb on + strand at 417.366 kb on + strand at 417.366 kb on + strand at 417.366 kb on + strand at 417.366 kb on + strand at 417.366 kb on + strand at 417.366 kb on + strand at 417.367 kb on - strand at 417.367 kb on - strand at 417.367 kb on - strand at 417.367 kb on - strand at 417.367 kb on - strand at 417.367 kb on - strand at 417.367 kb on - strand at 417.367 kb on - strand at 417.484 kb on + strand at 417.555 kb on + strand at 417.555 kb on + strand at 417.556 kb on - strand, within DZA65_RS01895 at 417.702 kb on - strand, within DZA65_RS01895 at 417.702 kb on - strand, within DZA65_RS01895 at 417.785 kb on + strand, within DZA65_RS01895 at 417.820 kb on + strand, within DZA65_RS01895 at 417.820 kb on + strand, within DZA65_RS01895 at 417.855 kb on + strand, within DZA65_RS01895 at 417.855 kb on + strand at 417.856 kb on - strand, within DZA65_RS01895 at 417.856 kb on - strand, within DZA65_RS01895 at 417.875 kb on + strand, within DZA65_RS01895 at 417.884 kb on - strand, within DZA65_RS01895 at 417.884 kb on - strand, within DZA65_RS01895 at 417.901 kb on - strand, within DZA65_RS01895 at 417.953 kb on + strand, within DZA65_RS01895 at 417.953 kb on + strand, within DZA65_RS01895 at 417.953 kb on + strand, within DZA65_RS01895 at 417.953 kb on + strand, within DZA65_RS01895 at 417.953 kb on + strand, within DZA65_RS01895 at 417.953 kb on + strand, within DZA65_RS01895 at 417.954 kb on - strand, within DZA65_RS01895 at 417.957 kb on + strand, within DZA65_RS01895 at 417.957 kb on + strand, within DZA65_RS01895 at 417.957 kb on + strand, within DZA65_RS01895 at 417.958 kb on - strand, within DZA65_RS01895 at 418.021 kb on + strand, within DZA65_RS01895 at 418.021 kb on + strand, within DZA65_RS01895 at 418.021 kb on + strand, within DZA65_RS01895 at 418.021 kb on + strand, within DZA65_RS01895 at 418.022 kb on - strand at 418.022 kb on - strand, within DZA65_RS01895 at 418.022 kb on - strand, within DZA65_RS01895 at 418.022 kb on - strand, within DZA65_RS01895 at 418.093 kb on + strand, within DZA65_RS01895 at 418.094 kb on - strand, within DZA65_RS01895 at 418.102 kb on + strand, within DZA65_RS01895 at 418.102 kb on + strand, within DZA65_RS01895 at 418.102 kb on + strand, within DZA65_RS01895 at 418.102 kb on + strand, within DZA65_RS01895 at 418.102 kb on + strand, within DZA65_RS01895 at 418.102 kb on + strand, within DZA65_RS01895 at 418.102 kb on + strand, within DZA65_RS01895 at 418.103 kb on - strand, within DZA65_RS01895 at 418.103 kb on - strand, within DZA65_RS01895 at 418.103 kb on - strand, within DZA65_RS01895 at 418.122 kb on + strand, within DZA65_RS01895 at 418.123 kb on - strand, within DZA65_RS01895 at 418.142 kb on + strand, within DZA65_RS01895 at 418.142 kb on + strand, within DZA65_RS01895 at 418.142 kb on + strand, within DZA65_RS01895 at 418.143 kb on - strand, within DZA65_RS01895 at 418.143 kb on - strand, within DZA65_RS01895 at 418.143 kb on - strand, within DZA65_RS01895 at 418.143 kb on - strand, within DZA65_RS01895 at 418.143 kb on - strand, within DZA65_RS01895 at 418.235 kb on - strand, within DZA65_RS01895 at 418.253 kb on + strand, within DZA65_RS01895 at 418.253 kb on + strand, within DZA65_RS01895 at 418.254 kb on - strand, within DZA65_RS01895 at 418.254 kb on - strand, within DZA65_RS01895 at 418.254 kb on - strand, within DZA65_RS01895 at 418.296 kb on - strand, within DZA65_RS01895 at 418.313 kb on + strand, within DZA65_RS01895 at 418.313 kb on + strand, within DZA65_RS01895 at 418.313 kb on + strand, within DZA65_RS01895 at 418.313 kb on + strand, within DZA65_RS01895 at 418.313 kb on + strand, within DZA65_RS01895 at 418.313 kb on + strand, within DZA65_RS01895 at 418.313 kb on + strand, within DZA65_RS01895 at 418.313 kb on + strand, within DZA65_RS01895 at 418.313 kb on + strand, within DZA65_RS01895 at 418.313 kb on + strand, within DZA65_RS01895 at 418.313 kb on + strand, within DZA65_RS01895 at 418.313 kb on + strand, within DZA65_RS01895 at 418.313 kb on + strand, within DZA65_RS01895 at 418.314 kb on - strand, within DZA65_RS01895 at 418.314 kb on - strand, within DZA65_RS01895 at 418.314 kb on - strand, within DZA65_RS01895 at 418.314 kb on - strand, within DZA65_RS01895 at 418.314 kb on - strand, within DZA65_RS01895 at 418.314 kb on - strand, within DZA65_RS01895 at 418.314 kb on - strand, within DZA65_RS01895 at 418.314 kb on - strand, within DZA65_RS01895 at 418.314 kb on - strand, within DZA65_RS01895 at 418.314 kb on - strand, within DZA65_RS01895 at 418.314 kb on - strand, within DZA65_RS01895 at 418.314 kb on - strand, within DZA65_RS01895 at 418.314 kb on - strand, within DZA65_RS01895 at 418.314 kb on - strand, within DZA65_RS01895 at 418.314 kb on - strand, within DZA65_RS01895 at 418.314 kb on - strand, within DZA65_RS01895 at 418.314 kb on - strand at 418.314 kb on - strand, within DZA65_RS01895 at 418.325 kb on - strand, within DZA65_RS01895 at 418.343 kb on - strand, within DZA65_RS01895 at 418.343 kb on - strand, within DZA65_RS01895 at 418.343 kb on - strand, within DZA65_RS01895 at 418.385 kb on + strand at 418.386 kb on - strand at 418.386 kb on - strand at 418.396 kb on + strand at 418.397 kb on - strand at 418.397 kb on - strand at 418.397 kb on - strand at 418.397 kb on - strand at 418.478 kb on + strand at 418.479 kb on - strand at 418.484 kb on + strand at 418.484 kb on + strand at 418.484 kb on + strand at 418.484 kb on + strand at 418.484 kb on + strand at 418.484 kb on + strand at 418.484 kb on + strand at 418.484 kb on + strand at 418.484 kb on + strand at 418.484 kb on + strand at 418.484 kb on + strand at 418.484 kb on + strand at 418.484 kb on + strand at 418.485 kb on - strand at 418.485 kb on - strand at 418.485 kb on - strand at 418.485 kb on - strand at 418.485 kb on - strand at 418.485 kb on - strand at 418.485 kb on - strand at 418.485 kb on - strand at 418.485 kb on - strand at 418.485 kb on - strand at 418.485 kb on - strand at 418.485 kb on - strand at 418.485 kb on - strand at 418.485 kb on - strand at 418.485 kb on - strand at 418.485 kb on - strand at 418.485 kb on - strand at 418.485 kb on - strand at 418.485 kb on - strand at 418.578 kb on - strand, within DZA65_RS01900 at 418.691 kb on - strand, within DZA65_RS01900 at 418.873 kb on + strand, within DZA65_RS01900 at 418.873 kb on + strand, within DZA65_RS01900 at 418.902 kb on + strand, within DZA65_RS01900 at 418.903 kb on - strand, within DZA65_RS01900 at 418.924 kb on - strand, within DZA65_RS01900 at 418.924 kb on - strand, within DZA65_RS01900 at 418.924 kb on - strand, within DZA65_RS01900 at 418.924 kb on - strand, within DZA65_RS01900 at 419.075 kb on - strand, within DZA65_RS01900 at 419.265 kb on + strand at 419.265 kb on + strand at 419.281 kb on + strand at 419.282 kb on - strand at 419.384 kb on + strand at 419.384 kb on + strand at 419.384 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 416,763 + DZA65_RS01890 0.56 -0.5 416,794 + DZA65_RS01890 0.58 -2.5 416,794 + DZA65_RS01890 0.58 -2.0 416,795 - DZA65_RS01890 0.58 -0.4 416,795 - DZA65_RS01890 0.58 -1.5 416,817 + DZA65_RS01890 0.59 -0.5 416,884 + DZA65_RS01890 0.64 -0.9 416,915 - DZA65_RS01890 0.66 -0.7 417,008 + DZA65_RS01890 0.72 -0.2 417,009 - DZA65_RS01890 0.72 -0.7 417,025 + DZA65_RS01890 0.73 +0.3 417,025 + DZA65_RS01890 0.73 +0.5 417,026 - DZA65_RS01890 0.73 +0.1 417,283 + DZA65_RS01890 0.89 -0.0 417,312 + +0.7 417,338 - +0.5 417,364 - -0.1 417,364 - +0.2 417,364 - +0.1 417,366 + -1.7 417,366 + -0.5 417,366 + +0.1 417,366 + -1.0 417,366 + -0.8 417,366 + +0.1 417,366 + -0.6 417,366 + -0.3 417,367 - -0.8 417,367 - -0.8 417,367 - -0.8 417,367 - +0.2 417,367 - +0.7 417,367 - +0.2 417,367 - +0.3 417,367 - -1.3 417,484 + +0.3 417,555 + +0.2 417,555 + -0.7 417,556 - DZA65_RS01895 0.10 -1.0 417,702 - DZA65_RS01895 0.25 -0.4 417,702 - DZA65_RS01895 0.25 -0.4 417,785 + DZA65_RS01895 0.33 +1.0 417,820 + DZA65_RS01895 0.36 +0.4 417,820 + DZA65_RS01895 0.36 +0.5 417,855 + DZA65_RS01895 0.40 -0.3 417,855 + +1.3 417,856 - DZA65_RS01895 0.40 -0.2 417,856 - DZA65_RS01895 0.40 +1.0 417,875 + DZA65_RS01895 0.42 -0.1 417,884 - DZA65_RS01895 0.43 -0.0 417,884 - DZA65_RS01895 0.43 -0.1 417,901 - DZA65_RS01895 0.44 +1.3 417,953 + DZA65_RS01895 0.50 -0.3 417,953 + DZA65_RS01895 0.50 -0.4 417,953 + DZA65_RS01895 0.50 +0.2 417,953 + DZA65_RS01895 0.50 -1.5 417,953 + DZA65_RS01895 0.50 -1.3 417,953 + DZA65_RS01895 0.50 +0.8 417,954 - DZA65_RS01895 0.50 -0.7 417,957 + DZA65_RS01895 0.50 -1.5 417,957 + DZA65_RS01895 0.50 +0.2 417,957 + DZA65_RS01895 0.50 -0.2 417,958 - DZA65_RS01895 0.50 +1.0 418,021 + DZA65_RS01895 0.56 -0.6 418,021 + DZA65_RS01895 0.56 +0.3 418,021 + DZA65_RS01895 0.56 -0.5 418,021 + DZA65_RS01895 0.56 +0.1 418,022 - +0.7 418,022 - DZA65_RS01895 0.56 -0.7 418,022 - DZA65_RS01895 0.56 -0.3 418,022 - DZA65_RS01895 0.56 -0.1 418,093 + DZA65_RS01895 0.63 +0.4 418,094 - DZA65_RS01895 0.64 -0.4 418,102 + DZA65_RS01895 0.64 -0.6 418,102 + DZA65_RS01895 0.64 -0.7 418,102 + DZA65_RS01895 0.64 +0.0 418,102 + DZA65_RS01895 0.64 -0.4 418,102 + DZA65_RS01895 0.64 -0.0 418,102 + DZA65_RS01895 0.64 +0.3 418,102 + DZA65_RS01895 0.64 -1.2 418,103 - DZA65_RS01895 0.64 -0.5 418,103 - DZA65_RS01895 0.64 -0.9 418,103 - DZA65_RS01895 0.64 +0.1 418,122 + DZA65_RS01895 0.66 -0.1 418,123 - DZA65_RS01895 0.66 -0.4 418,142 + DZA65_RS01895 0.68 -0.6 418,142 + DZA65_RS01895 0.68 +0.3 418,142 + DZA65_RS01895 0.68 -0.5 418,143 - DZA65_RS01895 0.68 +0.4 418,143 - DZA65_RS01895 0.68 +0.1 418,143 - DZA65_RS01895 0.68 -0.7 418,143 - DZA65_RS01895 0.68 -0.9 418,143 - DZA65_RS01895 0.68 +0.5 418,235 - DZA65_RS01895 0.78 +0.7 418,253 + DZA65_RS01895 0.79 +0.6 418,253 + DZA65_RS01895 0.79 +0.1 418,254 - DZA65_RS01895 0.80 -2.0 418,254 - DZA65_RS01895 0.80 -1.0 418,254 - DZA65_RS01895 0.80 -0.7 418,296 - DZA65_RS01895 0.84 -0.4 418,313 + DZA65_RS01895 0.85 -0.1 418,313 + DZA65_RS01895 0.85 +0.3 418,313 + DZA65_RS01895 0.85 -0.9 418,313 + DZA65_RS01895 0.85 -0.3 418,313 + DZA65_RS01895 0.85 -0.7 418,313 + DZA65_RS01895 0.85 -2.8 418,313 + DZA65_RS01895 0.85 -1.8 418,313 + DZA65_RS01895 0.85 +0.6 418,313 + DZA65_RS01895 0.85 -0.7 418,313 + DZA65_RS01895 0.85 -2.1 418,313 + DZA65_RS01895 0.85 -0.4 418,313 + DZA65_RS01895 0.85 -0.5 418,313 + DZA65_RS01895 0.85 -0.4 418,314 - DZA65_RS01895 0.85 -1.4 418,314 - DZA65_RS01895 0.85 -0.1 418,314 - DZA65_RS01895 0.85 -0.4 418,314 - DZA65_RS01895 0.85 -1.2 418,314 - DZA65_RS01895 0.85 -0.1 418,314 - DZA65_RS01895 0.85 -0.4 418,314 - DZA65_RS01895 0.85 +0.1 418,314 - DZA65_RS01895 0.85 -0.9 418,314 - DZA65_RS01895 0.85 -0.5 418,314 - DZA65_RS01895 0.85 +1.6 418,314 - DZA65_RS01895 0.85 -0.0 418,314 - DZA65_RS01895 0.85 -0.4 418,314 - DZA65_RS01895 0.85 +0.6 418,314 - DZA65_RS01895 0.85 +0.8 418,314 - DZA65_RS01895 0.85 +0.2 418,314 - DZA65_RS01895 0.85 -0.3 418,314 - +0.7 418,314 - DZA65_RS01895 0.85 -0.6 418,325 - DZA65_RS01895 0.87 -0.5 418,343 - DZA65_RS01895 0.88 -2.4 418,343 - DZA65_RS01895 0.88 -1.0 418,343 - DZA65_RS01895 0.88 -1.1 418,385 + -0.9 418,386 - -1.7 418,386 - -0.1 418,396 + +1.0 418,397 - -0.3 418,397 - -0.4 418,397 - +0.8 418,397 - -0.5 418,478 + +0.8 418,479 - -1.6 418,484 + +1.3 418,484 + +0.2 418,484 + -1.4 418,484 + -0.2 418,484 + +0.6 418,484 + +0.1 418,484 + -2.0 418,484 + +0.8 418,484 + -0.3 418,484 + +1.3 418,484 + +0.9 418,484 + +0.4 418,484 + -0.7 418,485 - +0.3 418,485 - +0.1 418,485 - +0.3 418,485 - -2.2 418,485 - -1.4 418,485 - -0.2 418,485 - -0.1 418,485 - -1.5 418,485 - -1.2 418,485 - +0.5 418,485 - +0.0 418,485 - -0.1 418,485 - +0.3 418,485 - +0.5 418,485 - +1.6 418,485 - -0.9 418,485 - +0.7 418,485 - -0.1 418,485 - -0.7 418,578 - DZA65_RS01900 0.11 -0.2 418,691 - DZA65_RS01900 0.25 -0.2 418,873 + DZA65_RS01900 0.47 +1.6 418,873 + DZA65_RS01900 0.47 +0.3 418,902 + DZA65_RS01900 0.50 +1.3 418,903 - DZA65_RS01900 0.51 -1.5 418,924 - DZA65_RS01900 0.53 -0.7 418,924 - DZA65_RS01900 0.53 +0.3 418,924 - DZA65_RS01900 0.53 +0.3 418,924 - DZA65_RS01900 0.53 -0.6 419,075 - DZA65_RS01900 0.72 -0.6 419,265 + -0.9 419,265 + -0.2 419,281 + -0.0 419,282 - +0.1 419,384 + -0.0 419,384 + -0.4 419,384 + -0.4
Or see this region's nucleotide sequence