Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS00885 and DZA65_RS00890 are separated by 260 nucleotides DZA65_RS00890 and DZA65_RS00895 are separated by 62 nucleotides
DZA65_RS00885: DZA65_RS00885 - uridine phosphorylase, at 198,259 to 199,020
_RS00885
DZA65_RS00890: DZA65_RS00890 - tyrosine-protein phosphatase, at 199,281 to 200,063
_RS00890
DZA65_RS00895: DZA65_RS00895 - phosphoenolpyruvate carboxylase, at 200,126 to 202,765
_RS00895
Position (kb) 199
200
201 Strain fitness (log2 ratio) -2
-1
0
1
2 at 198.439 kb on - strand, within DZA65_RS00885 at 198.471 kb on + strand, within DZA65_RS00885 at 198.472 kb on - strand, within DZA65_RS00885 at 198.485 kb on + strand, within DZA65_RS00885 at 198.485 kb on + strand, within DZA65_RS00885 at 198.514 kb on - strand, within DZA65_RS00885 at 198.514 kb on - strand, within DZA65_RS00885 at 198.514 kb on - strand, within DZA65_RS00885 at 198.660 kb on + strand, within DZA65_RS00885 at 198.660 kb on + strand, within DZA65_RS00885 at 198.661 kb on - strand, within DZA65_RS00885 at 198.661 kb on - strand, within DZA65_RS00885 at 198.732 kb on + strand, within DZA65_RS00885 at 198.758 kb on - strand, within DZA65_RS00885 at 198.758 kb on - strand at 198.766 kb on + strand, within DZA65_RS00885 at 198.767 kb on - strand, within DZA65_RS00885 at 198.767 kb on - strand, within DZA65_RS00885 at 198.801 kb on + strand, within DZA65_RS00885 at 198.801 kb on + strand, within DZA65_RS00885 at 198.802 kb on - strand, within DZA65_RS00885 at 198.835 kb on + strand, within DZA65_RS00885 at 198.835 kb on + strand, within DZA65_RS00885 at 198.835 kb on + strand, within DZA65_RS00885 at 198.836 kb on - strand, within DZA65_RS00885 at 198.836 kb on - strand, within DZA65_RS00885 at 198.836 kb on - strand, within DZA65_RS00885 at 198.921 kb on + strand, within DZA65_RS00885 at 198.921 kb on + strand, within DZA65_RS00885 at 198.943 kb on - strand, within DZA65_RS00885 at 198.948 kb on + strand at 198.948 kb on + strand at 198.949 kb on - strand at 199.008 kb on - strand at 199.087 kb on + strand at 199.087 kb on + strand at 199.088 kb on - strand at 199.088 kb on - strand at 199.137 kb on + strand at 199.138 kb on - strand at 199.138 kb on - strand at 199.138 kb on - strand at 199.143 kb on + strand at 199.143 kb on + strand at 199.144 kb on - strand at 199.144 kb on - strand at 199.144 kb on - strand at 199.144 kb on - strand at 199.144 kb on - strand at 199.164 kb on + strand at 199.165 kb on - strand at 199.167 kb on + strand at 199.167 kb on + strand at 199.167 kb on + strand at 199.167 kb on + strand at 199.167 kb on + strand at 199.168 kb on - strand at 199.168 kb on - strand at 199.168 kb on - strand at 199.168 kb on - strand at 199.168 kb on - strand at 199.168 kb on - strand at 199.168 kb on - strand at 199.168 kb on - strand at 199.168 kb on - strand at 199.199 kb on + strand at 199.199 kb on + strand at 199.199 kb on + strand at 199.199 kb on + strand at 199.200 kb on - strand at 199.200 kb on - strand at 199.200 kb on - strand at 199.200 kb on - strand at 199.218 kb on + strand at 199.219 kb on - strand at 199.222 kb on + strand at 199.222 kb on + strand at 199.222 kb on + strand at 199.222 kb on + strand at 199.222 kb on + strand at 199.222 kb on + strand at 199.222 kb on + strand at 199.222 kb on + strand at 199.223 kb on - strand at 199.223 kb on - strand at 199.223 kb on - strand at 199.223 kb on - strand at 199.223 kb on - strand at 199.223 kb on - strand at 199.223 kb on - strand at 199.223 kb on - strand at 199.223 kb on - strand at 199.223 kb on - strand at 199.223 kb on - strand at 199.237 kb on - strand at 199.251 kb on - strand at 199.251 kb on - strand at 199.251 kb on - strand at 199.264 kb on + strand at 199.268 kb on + strand at 199.268 kb on + strand at 199.268 kb on + strand at 199.268 kb on + strand at 199.269 kb on + strand at 199.269 kb on - strand at 199.269 kb on - strand at 199.280 kb on + strand at 199.280 kb on + strand at 199.281 kb on - strand at 199.298 kb on - strand at 199.298 kb on - strand at 199.349 kb on - strand at 199.349 kb on - strand at 199.423 kb on + strand, within DZA65_RS00890 at 199.423 kb on + strand, within DZA65_RS00890 at 199.423 kb on + strand, within DZA65_RS00890 at 199.423 kb on + strand, within DZA65_RS00890 at 199.423 kb on + strand, within DZA65_RS00890 at 199.423 kb on + strand, within DZA65_RS00890 at 199.424 kb on - strand, within DZA65_RS00890 at 199.424 kb on - strand, within DZA65_RS00890 at 199.424 kb on - strand, within DZA65_RS00890 at 199.424 kb on - strand, within DZA65_RS00890 at 199.454 kb on + strand, within DZA65_RS00890 at 199.454 kb on + strand, within DZA65_RS00890 at 199.537 kb on - strand, within DZA65_RS00890 at 199.634 kb on + strand, within DZA65_RS00890 at 199.634 kb on + strand, within DZA65_RS00890 at 199.634 kb on + strand, within DZA65_RS00890 at 199.634 kb on + strand, within DZA65_RS00890 at 199.635 kb on - strand, within DZA65_RS00890 at 199.635 kb on - strand, within DZA65_RS00890 at 199.635 kb on - strand, within DZA65_RS00890 at 199.635 kb on - strand, within DZA65_RS00890 at 199.635 kb on - strand, within DZA65_RS00890 at 199.657 kb on + strand, within DZA65_RS00890 at 199.677 kb on + strand, within DZA65_RS00890 at 199.754 kb on + strand, within DZA65_RS00890 at 199.821 kb on + strand, within DZA65_RS00890 at 199.822 kb on - strand, within DZA65_RS00890 at 199.822 kb on - strand, within DZA65_RS00890 at 199.992 kb on - strand at 200.010 kb on + strand at 200.011 kb on - strand at 200.049 kb on - strand at 200.049 kb on - strand at 200.052 kb on + strand at 200.052 kb on + strand at 200.052 kb on + strand at 200.052 kb on + strand at 200.052 kb on + strand at 200.053 kb on - strand at 200.053 kb on - strand at 200.053 kb on - strand at 200.053 kb on - strand at 200.053 kb on - strand at 200.053 kb on - strand at 200.077 kb on + strand at 200.077 kb on + strand at 200.078 kb on - strand at 200.083 kb on - strand at 200.097 kb on + strand at 200.097 kb on + strand at 200.097 kb on + strand at 200.097 kb on + strand at 200.097 kb on + strand at 200.097 kb on + strand at 200.097 kb on + strand at 200.097 kb on + strand at 200.097 kb on + strand at 200.098 kb on - strand at 200.098 kb on - strand at 200.098 kb on - strand at 200.098 kb on - strand at 200.186 kb on + strand at 200.186 kb on + strand at 200.186 kb on + strand at 200.187 kb on - strand at 200.243 kb on + strand at 200.243 kb on + strand at 200.243 kb on + strand at 200.244 kb on - strand at 200.244 kb on - strand at 200.244 kb on - strand at 200.262 kb on + strand at 200.262 kb on + strand at 200.263 kb on - strand at 200.263 kb on - strand at 200.326 kb on + strand at 200.421 kb on + strand, within DZA65_RS00895 at 200.421 kb on + strand, within DZA65_RS00895 at 200.422 kb on - strand, within DZA65_RS00895 at 200.422 kb on - strand, within DZA65_RS00895 at 200.424 kb on + strand, within DZA65_RS00895 at 200.424 kb on + strand, within DZA65_RS00895 at 200.425 kb on - strand, within DZA65_RS00895 at 200.425 kb on - strand, within DZA65_RS00895 at 200.470 kb on + strand, within DZA65_RS00895 at 200.471 kb on - strand, within DZA65_RS00895 at 200.471 kb on - strand, within DZA65_RS00895 at 200.471 kb on - strand, within DZA65_RS00895 at 200.725 kb on - strand, within DZA65_RS00895 at 200.725 kb on - strand, within DZA65_RS00895 at 200.725 kb on - strand, within DZA65_RS00895 at 200.754 kb on + strand, within DZA65_RS00895 at 200.754 kb on + strand, within DZA65_RS00895 at 200.755 kb on - strand, within DZA65_RS00895 at 200.755 kb on - strand, within DZA65_RS00895 at 200.755 kb on - strand, within DZA65_RS00895 at 200.763 kb on + strand, within DZA65_RS00895 at 200.763 kb on + strand, within DZA65_RS00895 at 200.764 kb on - strand, within DZA65_RS00895 at 200.764 kb on - strand, within DZA65_RS00895 at 200.764 kb on - strand, within DZA65_RS00895 at 200.764 kb on - strand, within DZA65_RS00895 at 200.764 kb on - strand, within DZA65_RS00895 at 200.842 kb on + strand, within DZA65_RS00895 at 200.842 kb on + strand, within DZA65_RS00895 at 200.843 kb on - strand, within DZA65_RS00895 at 200.865 kb on + strand, within DZA65_RS00895 at 200.865 kb on + strand, within DZA65_RS00895 at 200.865 kb on + strand, within DZA65_RS00895 at 200.865 kb on + strand, within DZA65_RS00895 at 200.865 kb on + strand, within DZA65_RS00895 at 200.866 kb on - strand, within DZA65_RS00895 at 200.866 kb on - strand, within DZA65_RS00895 at 201.054 kb on + strand, within DZA65_RS00895 at 201.054 kb on + strand, within DZA65_RS00895 at 201.054 kb on + strand, within DZA65_RS00895 at 201.055 kb on - strand, within DZA65_RS00895 at 201.055 kb on - strand, within DZA65_RS00895
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 198,439 - DZA65_RS00885 0.24 +0.2 198,471 + DZA65_RS00885 0.28 -0.5 198,472 - DZA65_RS00885 0.28 -0.6 198,485 + DZA65_RS00885 0.30 +0.1 198,485 + DZA65_RS00885 0.30 +0.0 198,514 - DZA65_RS00885 0.33 -1.1 198,514 - DZA65_RS00885 0.33 +0.6 198,514 - DZA65_RS00885 0.33 -1.2 198,660 + DZA65_RS00885 0.53 -1.4 198,660 + DZA65_RS00885 0.53 +0.4 198,661 - DZA65_RS00885 0.53 -1.1 198,661 - DZA65_RS00885 0.53 +0.1 198,732 + DZA65_RS00885 0.62 -1.3 198,758 - DZA65_RS00885 0.65 -0.7 198,758 - +1.0 198,766 + DZA65_RS00885 0.67 -0.6 198,767 - DZA65_RS00885 0.67 +0.6 198,767 - DZA65_RS00885 0.67 -0.5 198,801 + DZA65_RS00885 0.71 -0.8 198,801 + DZA65_RS00885 0.71 -0.2 198,802 - DZA65_RS00885 0.71 +0.8 198,835 + DZA65_RS00885 0.76 +0.3 198,835 + DZA65_RS00885 0.76 +1.0 198,835 + DZA65_RS00885 0.76 -0.2 198,836 - DZA65_RS00885 0.76 -0.0 198,836 - DZA65_RS00885 0.76 -0.4 198,836 - DZA65_RS00885 0.76 -0.6 198,921 + DZA65_RS00885 0.87 +0.6 198,921 + DZA65_RS00885 0.87 +0.6 198,943 - DZA65_RS00885 0.90 +2.7 198,948 + -0.4 198,948 + -2.7 198,949 - +0.5 199,008 - -0.5 199,087 + -0.6 199,087 + +0.9 199,088 - +0.8 199,088 - -2.1 199,137 + +1.4 199,138 - -0.2 199,138 - -0.3 199,138 - -0.4 199,143 + +0.1 199,143 + +0.8 199,144 - +1.6 199,144 - -0.2 199,144 - -1.3 199,144 - -0.4 199,144 - -0.8 199,164 + +1.7 199,165 - -1.2 199,167 + -0.0 199,167 + +0.4 199,167 + +0.1 199,167 + +0.3 199,167 + -0.9 199,168 - -0.9 199,168 - -0.5 199,168 - -0.7 199,168 - +0.2 199,168 - -0.7 199,168 - -0.3 199,168 - +0.4 199,168 - +1.1 199,168 - +0.2 199,199 + -0.2 199,199 + -0.7 199,199 + +0.8 199,199 + +1.0 199,200 - +0.4 199,200 - -0.0 199,200 - -0.1 199,200 - +0.4 199,218 + -0.3 199,219 - -0.7 199,222 + -0.4 199,222 + +1.1 199,222 + +0.4 199,222 + +0.4 199,222 + -0.4 199,222 + +0.2 199,222 + +1.4 199,222 + -2.1 199,223 - -2.1 199,223 - -0.4 199,223 - +0.3 199,223 - +0.8 199,223 - +0.3 199,223 - +0.0 199,223 - +0.3 199,223 - -0.3 199,223 - -0.8 199,223 - +0.8 199,223 - +0.9 199,237 - +0.6 199,251 - +0.4 199,251 - -0.6 199,251 - -0.6 199,264 + -2.3 199,268 + +0.0 199,268 + -1.4 199,268 + +0.1 199,268 + +0.8 199,269 + -0.6 199,269 - -0.0 199,269 - +0.5 199,280 + +1.2 199,280 + -0.3 199,281 - -0.6 199,298 - -0.6 199,298 - +1.0 199,349 - -0.2 199,349 - +0.1 199,423 + DZA65_RS00890 0.18 -2.5 199,423 + DZA65_RS00890 0.18 -1.9 199,423 + DZA65_RS00890 0.18 +0.0 199,423 + DZA65_RS00890 0.18 -0.6 199,423 + DZA65_RS00890 0.18 -0.5 199,423 + DZA65_RS00890 0.18 +0.2 199,424 - DZA65_RS00890 0.18 +0.4 199,424 - DZA65_RS00890 0.18 +0.7 199,424 - DZA65_RS00890 0.18 -0.6 199,424 - DZA65_RS00890 0.18 +0.3 199,454 + DZA65_RS00890 0.22 +0.1 199,454 + DZA65_RS00890 0.22 -0.1 199,537 - DZA65_RS00890 0.33 -0.4 199,634 + DZA65_RS00890 0.45 -1.3 199,634 + DZA65_RS00890 0.45 -0.9 199,634 + DZA65_RS00890 0.45 -0.4 199,634 + DZA65_RS00890 0.45 -2.0 199,635 - DZA65_RS00890 0.45 -0.6 199,635 - DZA65_RS00890 0.45 -0.8 199,635 - DZA65_RS00890 0.45 -0.2 199,635 - DZA65_RS00890 0.45 -1.9 199,635 - DZA65_RS00890 0.45 -0.2 199,657 + DZA65_RS00890 0.48 +0.4 199,677 + DZA65_RS00890 0.51 -0.6 199,754 + DZA65_RS00890 0.60 -0.2 199,821 + DZA65_RS00890 0.69 -0.2 199,822 - DZA65_RS00890 0.69 -0.1 199,822 - DZA65_RS00890 0.69 +0.5 199,992 - -0.5 200,010 + -0.2 200,011 - -0.6 200,049 - -0.0 200,049 - +0.6 200,052 + +1.4 200,052 + +1.4 200,052 + +0.6 200,052 + +2.0 200,052 + +0.0 200,053 - +2.1 200,053 - -1.5 200,053 - +0.1 200,053 - -0.8 200,053 - -0.4 200,053 - +0.5 200,077 + +0.5 200,077 + -0.5 200,078 - +0.1 200,083 - -0.8 200,097 + -0.1 200,097 + -0.8 200,097 + -1.1 200,097 + -1.0 200,097 + -0.7 200,097 + -0.1 200,097 + -0.3 200,097 + +0.6 200,097 + -0.7 200,098 - +0.4 200,098 - +1.0 200,098 - +0.8 200,098 - -0.1 200,186 + -1.1 200,186 + -0.1 200,186 + +1.4 200,187 - -0.1 200,243 + +0.8 200,243 + -0.9 200,243 + -0.8 200,244 - -0.4 200,244 - -0.5 200,244 - -2.1 200,262 + -1.2 200,262 + -0.6 200,263 - +0.5 200,263 - -0.6 200,326 + -0.6 200,421 + DZA65_RS00895 0.11 +1.8 200,421 + DZA65_RS00895 0.11 -1.3 200,422 - DZA65_RS00895 0.11 -1.2 200,422 - DZA65_RS00895 0.11 -0.5 200,424 + DZA65_RS00895 0.11 -0.3 200,424 + DZA65_RS00895 0.11 +2.0 200,425 - DZA65_RS00895 0.11 +1.1 200,425 - DZA65_RS00895 0.11 +0.0 200,470 + DZA65_RS00895 0.13 -1.9 200,471 - DZA65_RS00895 0.13 -1.2 200,471 - DZA65_RS00895 0.13 +0.2 200,471 - DZA65_RS00895 0.13 +0.6 200,725 - DZA65_RS00895 0.23 -0.8 200,725 - DZA65_RS00895 0.23 +0.7 200,725 - DZA65_RS00895 0.23 -0.8 200,754 + DZA65_RS00895 0.24 -0.8 200,754 + DZA65_RS00895 0.24 +1.7 200,755 - DZA65_RS00895 0.24 +0.4 200,755 - DZA65_RS00895 0.24 +0.4 200,755 - DZA65_RS00895 0.24 -2.1 200,763 + DZA65_RS00895 0.24 -0.2 200,763 + DZA65_RS00895 0.24 -0.4 200,764 - DZA65_RS00895 0.24 +0.0 200,764 - DZA65_RS00895 0.24 -0.2 200,764 - DZA65_RS00895 0.24 -1.3 200,764 - DZA65_RS00895 0.24 +1.6 200,764 - DZA65_RS00895 0.24 -1.6 200,842 + DZA65_RS00895 0.27 +0.5 200,842 + DZA65_RS00895 0.27 -0.2 200,843 - DZA65_RS00895 0.27 +0.5 200,865 + DZA65_RS00895 0.28 +0.5 200,865 + DZA65_RS00895 0.28 -0.0 200,865 + DZA65_RS00895 0.28 +0.3 200,865 + DZA65_RS00895 0.28 -0.0 200,865 + DZA65_RS00895 0.28 -0.4 200,866 - DZA65_RS00895 0.28 +0.3 200,866 - DZA65_RS00895 0.28 -1.9 201,054 + DZA65_RS00895 0.35 -0.6 201,054 + DZA65_RS00895 0.35 -0.8 201,054 + DZA65_RS00895 0.35 -0.7 201,055 - DZA65_RS00895 0.35 -0.5 201,055 - DZA65_RS00895 0.35 -0.8
Or see this region's nucleotide sequence