Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS00790

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS00785 and DZA65_RS00790 are separated by 548 nucleotidesDZA65_RS00790 and DZA65_RS00795 overlap by 4 nucleotides DZA65_RS00785: DZA65_RS00785 - 3-deoxy-D-manno-octulosonic acid transferase, at 175,441 to 176,718 _RS00785 DZA65_RS00790: DZA65_RS00790 - glycosyltransferase family 4 protein, at 177,267 to 178,391 _RS00790 DZA65_RS00795: DZA65_RS00795 - glycosyltransferase family 9 protein, at 178,388 to 179,494 _RS00795 Position (kb) 177 178 179Strain fitness (log2 ratio) -2 -1 0 1 2at 176.729 kb on - strandat 176.732 kb on - strandat 176.732 kb on - strandat 176.732 kb on - strandat 176.732 kb on - strandat 176.732 kb on - strandat 176.734 kb on - strandat 176.754 kb on - strandat 176.755 kb on + strandat 176.756 kb on - strandat 176.762 kb on - strandat 176.762 kb on - strandat 176.832 kb on + strandat 176.847 kb on + strandat 176.888 kb on + strandat 176.928 kb on + strandat 176.929 kb on - strandat 176.965 kb on + strandat 176.992 kb on + strandat 176.993 kb on - strandat 176.995 kb on - strandat 177.028 kb on + strandat 177.028 kb on + strandat 177.029 kb on - strandat 177.032 kb on + strandat 177.065 kb on + strandat 177.066 kb on - strandat 177.066 kb on - strandat 177.152 kb on + strandat 177.152 kb on + strandat 177.153 kb on - strandat 177.174 kb on + strandat 177.174 kb on + strandat 177.174 kb on + strandat 177.175 kb on - strandat 177.175 kb on - strandat 177.193 kb on - strandat 177.218 kb on + strandat 177.218 kb on + strandat 177.218 kb on + strandat 177.218 kb on + strandat 177.218 kb on + strandat 177.218 kb on + strandat 177.218 kb on + strandat 177.218 kb on + strandat 177.218 kb on + strandat 177.219 kb on - strandat 177.219 kb on - strandat 177.219 kb on - strandat 177.219 kb on - strandat 177.219 kb on - strandat 177.219 kb on - strandat 177.223 kb on + strandat 177.223 kb on + strandat 177.232 kb on + strandat 177.239 kb on + strandat 177.240 kb on - strandat 177.246 kb on + strandat 177.247 kb on - strandat 177.253 kb on + strandat 177.253 kb on + strandat 177.255 kb on + strandat 177.255 kb on + strandat 177.255 kb on + strandat 177.255 kb on + strandat 177.261 kb on + strandat 177.283 kb on + strandat 177.292 kb on + strandat 177.292 kb on + strandat 177.374 kb on + strandat 177.407 kb on + strand, within DZA65_RS00790at 177.542 kb on + strand, within DZA65_RS00790at 177.542 kb on + strand, within DZA65_RS00790at 177.542 kb on + strand, within DZA65_RS00790at 177.543 kb on - strand, within DZA65_RS00790at 178.555 kb on + strand, within DZA65_RS00795at 178.559 kb on + strand, within DZA65_RS00795at 178.559 kb on + strand, within DZA65_RS00795at 178.684 kb on + strand, within DZA65_RS00795at 178.684 kb on + strand, within DZA65_RS00795at 178.697 kb on + strand, within DZA65_RS00795at 178.697 kb on + strand, within DZA65_RS00795at 178.697 kb on + strand, within DZA65_RS00795at 178.697 kb on + strand, within DZA65_RS00795at 178.697 kb on + strand, within DZA65_RS00795at 178.732 kb on + strand, within DZA65_RS00795at 178.732 kb on + strand, within DZA65_RS00795at 178.732 kb on + strand, within DZA65_RS00795at 178.732 kb on + strand, within DZA65_RS00795at 178.732 kb on + strand, within DZA65_RS00795at 178.792 kb on + strand, within DZA65_RS00795at 178.953 kb on + strand, within DZA65_RS00795at 178.954 kb on - strand, within DZA65_RS00795at 179.039 kb on + strand, within DZA65_RS00795at 179.039 kb on + strand, within DZA65_RS00795at 179.077 kb on + strand, within DZA65_RS00795at 179.077 kb on + strand, within DZA65_RS00795at 179.077 kb on + strand, within DZA65_RS00795at 179.077 kb on + strand, within DZA65_RS00795at 179.176 kb on + strand, within DZA65_RS00795at 179.176 kb on + strand, within DZA65_RS00795at 179.176 kb on + strand, within DZA65_RS00795at 179.221 kb on + strand, within DZA65_RS00795at 179.240 kb on + strand, within DZA65_RS00795at 179.240 kb on + strand, within DZA65_RS00795at 179.240 kb on + strand, within DZA65_RS00795at 179.240 kb on + strand, within DZA65_RS00795at 179.240 kb on + strand, within DZA65_RS00795at 179.299 kb on + strand, within DZA65_RS00795

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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176,729 - +0.4
176,732 - -1.0
176,732 - +1.4
176,732 - +1.0
176,732 - +1.4
176,732 - -0.0
176,734 - -0.5
176,754 - +1.1
176,755 + +0.4
176,756 - +0.6
176,762 - -0.3
176,762 - +0.8
176,832 + -1.9
176,847 + -0.9
176,888 + +0.7
176,928 + +0.4
176,929 - +1.4
176,965 + +0.4
176,992 + +0.8
176,993 - +0.1
176,995 - +0.5
177,028 + -0.6
177,028 + -1.4
177,029 - -0.1
177,032 + -0.1
177,065 + -0.6
177,066 - -1.2
177,066 - -0.3
177,152 + -0.3
177,152 + -0.2
177,153 - -0.6
177,174 + -0.4
177,174 + -0.5
177,174 + -0.0
177,175 - +2.2
177,175 - +0.3
177,193 - +0.9
177,218 + -1.5
177,218 + -0.4
177,218 + -0.2
177,218 + -0.1
177,218 + -0.1
177,218 + -0.4
177,218 + -1.3
177,218 + -1.4
177,218 + +0.9
177,219 - -1.9
177,219 - +0.2
177,219 - -0.9
177,219 - -0.7
177,219 - -1.9
177,219 - -0.4
177,223 + +0.6
177,223 + -0.1
177,232 + +0.9
177,239 + +0.1
177,240 - -1.1
177,246 + -0.4
177,247 - -0.3
177,253 + +0.9
177,253 + -1.6
177,255 + -1.6
177,255 + -1.6
177,255 + +0.3
177,255 + +0.2
177,261 + +0.6
177,283 + +0.1
177,292 + -1.7
177,292 + -1.6
177,374 + +0.2
177,407 + DZA65_RS00790 0.12 -1.4
177,542 + DZA65_RS00790 0.24 +0.4
177,542 + DZA65_RS00790 0.24 -0.4
177,542 + DZA65_RS00790 0.24 -0.5
177,543 - DZA65_RS00790 0.25 -0.2
178,555 + DZA65_RS00795 0.15 +0.2
178,559 + DZA65_RS00795 0.15 -1.4
178,559 + DZA65_RS00795 0.15 -0.1
178,684 + DZA65_RS00795 0.27 -0.3
178,684 + DZA65_RS00795 0.27 -1.4
178,697 + DZA65_RS00795 0.28 +0.4
178,697 + DZA65_RS00795 0.28 +0.1
178,697 + DZA65_RS00795 0.28 -1.1
178,697 + DZA65_RS00795 0.28 -0.8
178,697 + DZA65_RS00795 0.28 -0.5
178,732 + DZA65_RS00795 0.31 -0.5
178,732 + DZA65_RS00795 0.31 -0.2
178,732 + DZA65_RS00795 0.31 +0.1
178,732 + DZA65_RS00795 0.31 +0.4
178,732 + DZA65_RS00795 0.31 -0.6
178,792 + DZA65_RS00795 0.36 +0.5
178,953 + DZA65_RS00795 0.51 +0.5
178,954 - DZA65_RS00795 0.51 -0.9
179,039 + DZA65_RS00795 0.59 +1.0
179,039 + DZA65_RS00795 0.59 -0.5
179,077 + DZA65_RS00795 0.62 -1.0
179,077 + DZA65_RS00795 0.62 +0.7
179,077 + DZA65_RS00795 0.62 +0.7
179,077 + DZA65_RS00795 0.62 +0.2
179,176 + DZA65_RS00795 0.71 -1.4
179,176 + DZA65_RS00795 0.71 -0.5
179,176 + DZA65_RS00795 0.71 +0.1
179,221 + DZA65_RS00795 0.75 -0.0
179,240 + DZA65_RS00795 0.77 -0.1
179,240 + DZA65_RS00795 0.77 +0.3
179,240 + DZA65_RS00795 0.77 +0.4
179,240 + DZA65_RS00795 0.77 -0.4
179,240 + DZA65_RS00795 0.77 +0.1
179,299 + DZA65_RS00795 0.82 -0.2

Or see this region's nucleotide sequence