Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS00670 and DZA65_RS00675 overlap by 19 nucleotides DZA65_RS00675 and DZA65_RS00680 are separated by 27 nucleotides DZA65_RS00680 and DZA65_RS00685 are separated by 32 nucleotides
DZA65_RS00670: DZA65_RS00670 - HlyD family efflux transporter periplasmic adaptor subunit, at 154,920 to 156,182
_RS00670
DZA65_RS00675: DZA65_RS00675 - isoaspartyl peptidase/L-asparaginase, at 156,164 to 157,132
_RS00675
DZA65_RS00680: DZA65_RS00680 - M55 family metallopeptidase, at 157,160 to 157,981
_RS00680
DZA65_RS00685: DZA65_RS00685 - P1 family peptidase, at 158,014 to 159,069
_RS00685
Position (kb) 157
158 Strain fitness (log2 ratio) -2
-1
0
1 at 156.169 kb on + strand at 156.169 kb on + strand at 156.170 kb on - strand at 156.181 kb on - strand at 156.181 kb on - strand at 156.210 kb on + strand at 156.211 kb on - strand at 156.225 kb on + strand at 156.225 kb on + strand at 156.225 kb on + strand at 156.226 kb on - strand at 156.226 kb on - strand at 156.384 kb on + strand, within DZA65_RS00675 at 156.385 kb on - strand, within DZA65_RS00675 at 156.385 kb on - strand, within DZA65_RS00675 at 156.457 kb on - strand, within DZA65_RS00675 at 156.457 kb on - strand, within DZA65_RS00675 at 157.120 kb on + strand at 157.145 kb on + strand at 157.145 kb on + strand at 157.145 kb on + strand at 157.145 kb on + strand at 157.146 kb on - strand at 157.162 kb on - strand at 157.162 kb on - strand at 157.162 kb on - strand at 157.209 kb on - strand at 157.327 kb on - strand at 157.357 kb on + strand, within DZA65_RS00680 at 157.467 kb on + strand, within DZA65_RS00680 at 157.467 kb on + strand, within DZA65_RS00680 at 157.467 kb on + strand, within DZA65_RS00680 at 157.467 kb on + strand, within DZA65_RS00680 at 157.468 kb on - strand, within DZA65_RS00680 at 157.468 kb on - strand, within DZA65_RS00680 at 157.468 kb on - strand, within DZA65_RS00680 at 157.468 kb on - strand, within DZA65_RS00680 at 157.468 kb on - strand, within DZA65_RS00680 at 157.567 kb on - strand, within DZA65_RS00680 at 157.571 kb on - strand, within DZA65_RS00680 at 157.571 kb on - strand, within DZA65_RS00680 at 157.611 kb on + strand, within DZA65_RS00680 at 157.611 kb on + strand, within DZA65_RS00680 at 157.772 kb on - strand at 157.892 kb on + strand at 157.899 kb on + strand at 157.900 kb on - strand at 157.900 kb on - strand at 157.970 kb on - strand at 157.970 kb on - strand at 157.973 kb on + strand at 157.974 kb on - strand at 157.974 kb on - strand at 157.974 kb on - strand at 158.326 kb on - strand, within DZA65_RS00685 at 158.626 kb on - strand, within DZA65_RS00685 at 158.632 kb on - strand, within DZA65_RS00685 at 158.731 kb on - strand, within DZA65_RS00685 at 158.803 kb on + strand, within DZA65_RS00685 at 158.865 kb on + strand, within DZA65_RS00685 at 158.865 kb on + strand, within DZA65_RS00685 at 158.931 kb on + strand, within DZA65_RS00685 at 158.931 kb on + strand, within DZA65_RS00685 at 158.931 kb on + strand, within DZA65_RS00685 at 158.932 kb on - strand, within DZA65_RS00685 at 158.932 kb on - strand, within DZA65_RS00685 at 158.932 kb on - strand, within DZA65_RS00685 at 158.932 kb on - strand, within DZA65_RS00685 at 158.957 kb on - strand, within DZA65_RS00685
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 156,169 + -0.0 156,169 + -1.4 156,170 - -0.8 156,181 - +0.8 156,181 - -1.6 156,210 + -0.7 156,211 - -0.8 156,225 + +0.5 156,225 + +0.2 156,225 + +0.7 156,226 - +0.4 156,226 - -0.4 156,384 + DZA65_RS00675 0.23 -0.1 156,385 - DZA65_RS00675 0.23 +1.1 156,385 - DZA65_RS00675 0.23 +0.7 156,457 - DZA65_RS00675 0.30 -0.5 156,457 - DZA65_RS00675 0.30 -0.8 157,120 + +0.2 157,145 + +1.4 157,145 + -1.1 157,145 + +1.2 157,145 + -0.9 157,146 - -0.0 157,162 - -0.2 157,162 - -0.1 157,162 - +0.4 157,209 - -0.6 157,327 - +1.4 157,357 + DZA65_RS00680 0.24 -0.0 157,467 + DZA65_RS00680 0.37 +0.3 157,467 + DZA65_RS00680 0.37 -0.7 157,467 + DZA65_RS00680 0.37 -0.6 157,467 + DZA65_RS00680 0.37 -0.3 157,468 - DZA65_RS00680 0.37 +0.1 157,468 - DZA65_RS00680 0.37 -0.7 157,468 - DZA65_RS00680 0.37 -0.6 157,468 - DZA65_RS00680 0.37 -1.1 157,468 - DZA65_RS00680 0.37 +0.6 157,567 - DZA65_RS00680 0.50 -1.0 157,571 - DZA65_RS00680 0.50 -0.2 157,571 - DZA65_RS00680 0.50 -0.3 157,611 + DZA65_RS00680 0.55 -1.8 157,611 + DZA65_RS00680 0.55 +1.4 157,772 - +0.7 157,892 + +1.4 157,899 + +0.5 157,900 - -1.6 157,900 - -0.4 157,970 - +0.4 157,970 - +1.0 157,973 + -0.0 157,974 - -1.1 157,974 - -0.4 157,974 - +0.3 158,326 - DZA65_RS00685 0.30 +0.0 158,626 - DZA65_RS00685 0.58 -2.3 158,632 - DZA65_RS00685 0.59 -0.3 158,731 - DZA65_RS00685 0.68 +0.8 158,803 + DZA65_RS00685 0.75 +0.1 158,865 + DZA65_RS00685 0.81 +1.4 158,865 + DZA65_RS00685 0.81 -0.9 158,931 + DZA65_RS00685 0.87 +0.6 158,931 + DZA65_RS00685 0.87 -0.1 158,931 + DZA65_RS00685 0.87 +0.2 158,932 - DZA65_RS00685 0.87 +0.1 158,932 - DZA65_RS00685 0.87 -0.9 158,932 - DZA65_RS00685 0.87 +0.2 158,932 - DZA65_RS00685 0.87 +0.2 158,957 - DZA65_RS00685 0.89 -0.9
Or see this region's nucleotide sequence