Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS00560 and DZA65_RS00565 are separated by 157 nucleotides DZA65_RS00565 and DZA65_RS00570 are separated by 182 nucleotides
DZA65_RS00560: DZA65_RS00560 - hypothetical protein, at 128,600 to 130,171
_RS00560
DZA65_RS00565: DZA65_RS00565 - hypothetical protein, at 130,329 to 131,759
_RS00565
DZA65_RS00570: DZA65_RS00570 - IS3 family transposase, at 131,942 to 133,050
_RS00570
Position (kb) 130
131
132 Strain fitness (log2 ratio) -2
-1
0
1 at 129.368 kb on - strand, within DZA65_RS00560 at 129.414 kb on + strand, within DZA65_RS00560 at 129.415 kb on - strand, within DZA65_RS00560 at 129.525 kb on + strand, within DZA65_RS00560 at 129.610 kb on + strand, within DZA65_RS00560 at 129.746 kb on - strand, within DZA65_RS00560 at 129.799 kb on - strand, within DZA65_RS00560 at 129.856 kb on - strand, within DZA65_RS00560 at 129.859 kb on - strand, within DZA65_RS00560 at 129.921 kb on - strand, within DZA65_RS00560 at 129.929 kb on + strand, within DZA65_RS00560 at 129.962 kb on - strand, within DZA65_RS00560 at 130.005 kb on - strand, within DZA65_RS00560 at 130.009 kb on - strand, within DZA65_RS00560 at 130.009 kb on - strand, within DZA65_RS00560 at 130.009 kb on - strand, within DZA65_RS00560 at 130.012 kb on + strand, within DZA65_RS00560 at 130.036 kb on + strand at 130.036 kb on + strand at 130.037 kb on - strand at 130.055 kb on - strand at 130.065 kb on + strand at 130.065 kb on + strand at 130.066 kb on - strand at 130.138 kb on - strand at 130.138 kb on - strand at 130.181 kb on + strand at 130.182 kb on - strand at 130.211 kb on - strand at 130.211 kb on - strand at 130.238 kb on + strand at 130.239 kb on - strand at 130.239 kb on - strand at 130.239 kb on - strand at 130.270 kb on + strand at 130.329 kb on - strand at 130.343 kb on - strand at 130.358 kb on + strand at 130.368 kb on - strand at 130.369 kb on + strand at 130.369 kb on + strand at 130.528 kb on + strand, within DZA65_RS00565 at 130.603 kb on + strand, within DZA65_RS00565 at 130.603 kb on + strand, within DZA65_RS00565 at 130.769 kb on + strand, within DZA65_RS00565 at 130.792 kb on + strand, within DZA65_RS00565 at 130.793 kb on - strand, within DZA65_RS00565 at 130.796 kb on - strand, within DZA65_RS00565 at 130.880 kb on + strand, within DZA65_RS00565 at 130.880 kb on + strand, within DZA65_RS00565 at 130.938 kb on - strand, within DZA65_RS00565 at 131.038 kb on + strand, within DZA65_RS00565 at 131.039 kb on - strand, within DZA65_RS00565 at 131.148 kb on - strand, within DZA65_RS00565 at 131.151 kb on + strand, within DZA65_RS00565 at 131.184 kb on - strand, within DZA65_RS00565 at 131.456 kb on - strand, within DZA65_RS00565 at 131.497 kb on - strand, within DZA65_RS00565 at 131.581 kb on + strand, within DZA65_RS00565 at 131.582 kb on - strand, within DZA65_RS00565 at 131.593 kb on + strand, within DZA65_RS00565 at 131.598 kb on - strand, within DZA65_RS00565 at 131.668 kb on + strand at 131.668 kb on + strand at 131.865 kb on + strand at 131.865 kb on + strand at 131.869 kb on + strand at 131.872 kb on + strand at 131.873 kb on - strand at 131.928 kb on - strand at 131.989 kb on - strand at 132.481 kb on + strand, within DZA65_RS00570 at 132.485 kb on + strand, within DZA65_RS00570 at 132.485 kb on + strand, within DZA65_RS00570
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 129,368 - DZA65_RS00560 0.49 -0.1 129,414 + DZA65_RS00560 0.52 +0.6 129,415 - DZA65_RS00560 0.52 -0.4 129,525 + DZA65_RS00560 0.59 +0.6 129,610 + DZA65_RS00560 0.64 -0.2 129,746 - DZA65_RS00560 0.73 -1.1 129,799 - DZA65_RS00560 0.76 -0.6 129,856 - DZA65_RS00560 0.80 -0.8 129,859 - DZA65_RS00560 0.80 -0.2 129,921 - DZA65_RS00560 0.84 -0.9 129,929 + DZA65_RS00560 0.85 +0.9 129,962 - DZA65_RS00560 0.87 +0.4 130,005 - DZA65_RS00560 0.89 -1.4 130,009 - DZA65_RS00560 0.90 +0.9 130,009 - DZA65_RS00560 0.90 -0.5 130,009 - DZA65_RS00560 0.90 -0.6 130,012 + DZA65_RS00560 0.90 -0.1 130,036 + +0.4 130,036 + -0.8 130,037 - -0.4 130,055 - -0.8 130,065 + -0.3 130,065 + +0.4 130,066 - +0.6 130,138 - +1.0 130,138 - +0.4 130,181 + -0.9 130,182 - -1.0 130,211 - -0.5 130,211 - -0.3 130,238 + +0.2 130,239 - -0.2 130,239 - -1.4 130,239 - -0.2 130,270 + -0.3 130,329 - -0.4 130,343 - -0.6 130,358 + -1.1 130,368 - +0.8 130,369 + +0.1 130,369 + -1.1 130,528 + DZA65_RS00565 0.14 +0.2 130,603 + DZA65_RS00565 0.19 +1.5 130,603 + DZA65_RS00565 0.19 -0.5 130,769 + DZA65_RS00565 0.31 +0.1 130,792 + DZA65_RS00565 0.32 +0.5 130,793 - DZA65_RS00565 0.32 -0.6 130,796 - DZA65_RS00565 0.33 +0.2 130,880 + DZA65_RS00565 0.39 +1.7 130,880 + DZA65_RS00565 0.39 -0.9 130,938 - DZA65_RS00565 0.43 -0.2 131,038 + DZA65_RS00565 0.50 +0.0 131,039 - DZA65_RS00565 0.50 +0.3 131,148 - DZA65_RS00565 0.57 +0.3 131,151 + DZA65_RS00565 0.57 -0.2 131,184 - DZA65_RS00565 0.60 +0.4 131,456 - DZA65_RS00565 0.79 +0.4 131,497 - DZA65_RS00565 0.82 +0.4 131,581 + DZA65_RS00565 0.87 -1.9 131,582 - DZA65_RS00565 0.88 -1.3 131,593 + DZA65_RS00565 0.88 -0.2 131,598 - DZA65_RS00565 0.89 +1.0 131,668 + -0.9 131,668 + -0.6 131,865 + +0.6 131,865 + -1.8 131,869 + -0.4 131,872 + -0.6 131,873 - +0.6 131,928 - +0.2 131,989 - +0.1 132,481 + DZA65_RS00570 0.49 +0.3 132,485 + DZA65_RS00570 0.49 -0.3 132,485 + DZA65_RS00570 0.49 +0.1
Or see this region's nucleotide sequence