Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS00515 and DZA65_RS00520 overlap by 35 nucleotides DZA65_RS00520 and DZA65_RS00525 are separated by 94 nucleotides DZA65_RS00525 and DZA65_RS00530 are separated by 122 nucleotides DZA65_RS00530 and DZA65_RS00535 are separated by 337 nucleotides
DZA65_RS00515: DZA65_RS00515 - LuxR family transcriptional regulator, at 122,315 to 123,067
_RS00515
DZA65_RS00520: DZA65_RS00520 - acyl-homoserine-lactone synthase, at 123,033 to 123,671
_RS00520
DZA65_RS00525: DZA65_RS00525 - hypothetical protein, at 123,766 to 123,993
_RS00525
DZA65_RS00530: DZA65_RS00530 - DUF1471 domain-containing protein, at 124,116 to 124,364
_RS00530
DZA65_RS00535: DZA65_RS00535 - helix-turn-helix transcriptional regulator, at 124,702 to 125,055
_RS00535
Position (kb) 123
124 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 122.830 kb on + strand, within DZA65_RS00515 at 122.831 kb on - strand, within DZA65_RS00515 at 122.831 kb on - strand, within DZA65_RS00515 at 122.831 kb on - strand, within DZA65_RS00515 at 122.831 kb on - strand, within DZA65_RS00515 at 122.921 kb on - strand, within DZA65_RS00515 at 122.942 kb on - strand, within DZA65_RS00515 at 123.065 kb on + strand at 123.065 kb on + strand at 123.066 kb on - strand at 123.066 kb on - strand at 123.090 kb on + strand at 123.098 kb on + strand, within DZA65_RS00520 at 123.098 kb on + strand, within DZA65_RS00520 at 123.098 kb on + strand, within DZA65_RS00520 at 123.099 kb on - strand, within DZA65_RS00520 at 123.099 kb on - strand, within DZA65_RS00520 at 123.099 kb on - strand, within DZA65_RS00520 at 123.219 kb on + strand, within DZA65_RS00520 at 123.219 kb on + strand, within DZA65_RS00520 at 123.265 kb on + strand, within DZA65_RS00520 at 123.265 kb on + strand, within DZA65_RS00520 at 123.385 kb on + strand, within DZA65_RS00520 at 123.386 kb on - strand, within DZA65_RS00520 at 123.386 kb on - strand, within DZA65_RS00520 at 123.476 kb on + strand, within DZA65_RS00520 at 123.477 kb on - strand, within DZA65_RS00520 at 123.511 kb on + strand, within DZA65_RS00520 at 123.511 kb on + strand, within DZA65_RS00520 at 123.532 kb on + strand, within DZA65_RS00520 at 123.533 kb on - strand, within DZA65_RS00520 at 123.533 kb on - strand, within DZA65_RS00520 at 123.587 kb on + strand, within DZA65_RS00520 at 123.604 kb on - strand, within DZA65_RS00520 at 123.608 kb on + strand at 123.609 kb on - strand at 123.609 kb on - strand at 123.609 kb on - strand at 123.630 kb on - strand at 123.639 kb on + strand at 123.693 kb on + strand at 123.693 kb on + strand at 123.693 kb on + strand at 123.694 kb on - strand at 123.730 kb on - strand at 123.730 kb on - strand at 123.768 kb on - strand at 123.768 kb on - strand at 123.771 kb on + strand at 123.793 kb on - strand, within DZA65_RS00525 at 123.801 kb on + strand, within DZA65_RS00525 at 123.802 kb on - strand, within DZA65_RS00525 at 123.811 kb on - strand, within DZA65_RS00525 at 123.811 kb on - strand, within DZA65_RS00525 at 123.813 kb on + strand, within DZA65_RS00525 at 123.813 kb on + strand, within DZA65_RS00525 at 123.814 kb on - strand, within DZA65_RS00525 at 123.814 kb on - strand, within DZA65_RS00525 at 123.814 kb on - strand, within DZA65_RS00525 at 123.852 kb on + strand, within DZA65_RS00525 at 123.853 kb on - strand, within DZA65_RS00525 at 123.853 kb on - strand, within DZA65_RS00525 at 123.853 kb on - strand, within DZA65_RS00525 at 123.884 kb on - strand, within DZA65_RS00525 at 123.884 kb on - strand, within DZA65_RS00525 at 123.900 kb on + strand, within DZA65_RS00525 at 123.901 kb on - strand, within DZA65_RS00525 at 123.957 kb on - strand, within DZA65_RS00525 at 123.957 kb on - strand, within DZA65_RS00525 at 123.957 kb on - strand, within DZA65_RS00525 at 123.957 kb on - strand, within DZA65_RS00525 at 123.978 kb on + strand at 123.979 kb on - strand at 124.005 kb on - strand at 124.043 kb on + strand at 124.103 kb on - strand at 124.115 kb on + strand at 124.115 kb on + strand at 124.115 kb on + strand at 124.115 kb on + strand at 124.116 kb on - strand at 124.116 kb on - strand at 124.116 kb on - strand at 124.116 kb on - strand at 124.116 kb on - strand at 124.116 kb on - strand at 124.116 kb on - strand at 124.124 kb on + strand at 124.124 kb on + strand at 124.124 kb on + strand at 124.124 kb on + strand at 124.124 kb on + strand at 124.125 kb on - strand at 124.309 kb on + strand, within DZA65_RS00530 at 124.358 kb on + strand at 124.358 kb on + strand at 124.358 kb on + strand at 124.359 kb on - strand at 124.359 kb on - strand at 124.362 kb on + strand at 124.362 kb on + strand at 124.362 kb on + strand at 124.362 kb on + strand at 124.363 kb on - strand at 124.363 kb on - strand at 124.363 kb on - strand at 124.363 kb on - strand at 124.363 kb on - strand at 124.416 kb on + strand at 124.435 kb on + strand at 124.440 kb on + strand at 124.440 kb on + strand at 124.440 kb on + strand at 124.440 kb on + strand at 124.440 kb on + strand at 124.441 kb on - strand at 124.441 kb on - strand at 124.499 kb on + strand at 124.502 kb on + strand at 124.526 kb on + strand at 124.526 kb on + strand at 124.527 kb on - strand at 124.530 kb on + strand at 124.530 kb on + strand at 124.530 kb on + strand at 124.530 kb on + strand at 124.531 kb on - strand at 124.531 kb on - strand at 124.531 kb on - strand at 124.531 kb on - strand at 124.531 kb on - strand at 124.554 kb on + strand at 124.554 kb on + strand at 124.554 kb on + strand at 124.617 kb on - strand at 124.635 kb on - strand at 124.636 kb on + strand at 124.636 kb on + strand at 124.637 kb on - strand at 124.637 kb on - strand at 124.650 kb on + strand at 124.685 kb on + strand at 124.685 kb on + strand at 124.686 kb on - strand at 124.703 kb on + strand at 124.703 kb on + strand at 124.835 kb on + strand, within DZA65_RS00535 at 124.835 kb on + strand, within DZA65_RS00535 at 124.836 kb on - strand, within DZA65_RS00535 at 124.924 kb on - strand, within DZA65_RS00535 at 124.932 kb on + strand, within DZA65_RS00535 at 124.933 kb on - strand, within DZA65_RS00535
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 122,830 + DZA65_RS00515 0.68 +0.2 122,831 - DZA65_RS00515 0.69 +0.4 122,831 - DZA65_RS00515 0.69 +0.1 122,831 - DZA65_RS00515 0.69 -0.4 122,831 - DZA65_RS00515 0.69 +0.1 122,921 - DZA65_RS00515 0.80 +1.4 122,942 - DZA65_RS00515 0.83 +0.3 123,065 + +0.2 123,065 + -0.5 123,066 - +0.1 123,066 - -1.0 123,090 + +0.2 123,098 + DZA65_RS00520 0.10 +0.5 123,098 + DZA65_RS00520 0.10 +0.7 123,098 + DZA65_RS00520 0.10 -0.2 123,099 - DZA65_RS00520 0.10 -2.1 123,099 - DZA65_RS00520 0.10 -0.3 123,099 - DZA65_RS00520 0.10 -0.5 123,219 + DZA65_RS00520 0.29 +1.6 123,219 + DZA65_RS00520 0.29 +1.0 123,265 + DZA65_RS00520 0.36 -1.2 123,265 + DZA65_RS00520 0.36 +0.7 123,385 + DZA65_RS00520 0.55 -0.1 123,386 - DZA65_RS00520 0.55 -0.4 123,386 - DZA65_RS00520 0.55 +1.2 123,476 + DZA65_RS00520 0.69 -1.1 123,477 - DZA65_RS00520 0.69 +0.6 123,511 + DZA65_RS00520 0.75 -0.1 123,511 + DZA65_RS00520 0.75 +0.2 123,532 + DZA65_RS00520 0.78 -1.2 123,533 - DZA65_RS00520 0.78 +2.2 123,533 - DZA65_RS00520 0.78 +1.2 123,587 + DZA65_RS00520 0.87 -0.1 123,604 - DZA65_RS00520 0.89 +0.2 123,608 + +0.5 123,609 - -0.6 123,609 - -0.1 123,609 - +1.4 123,630 - -1.4 123,639 + +0.1 123,693 + -0.6 123,693 + +2.2 123,693 + -0.2 123,694 - -0.2 123,730 - -0.9 123,730 - -0.3 123,768 - -1.4 123,768 - -0.5 123,771 + +0.4 123,793 - DZA65_RS00525 0.12 -0.3 123,801 + DZA65_RS00525 0.15 +0.4 123,802 - DZA65_RS00525 0.16 -0.2 123,811 - DZA65_RS00525 0.20 -0.4 123,811 - DZA65_RS00525 0.20 -0.1 123,813 + DZA65_RS00525 0.21 -1.8 123,813 + DZA65_RS00525 0.21 -0.9 123,814 - DZA65_RS00525 0.21 -1.4 123,814 - DZA65_RS00525 0.21 -0.9 123,814 - DZA65_RS00525 0.21 -0.1 123,852 + DZA65_RS00525 0.38 -1.4 123,853 - DZA65_RS00525 0.38 -1.3 123,853 - DZA65_RS00525 0.38 +0.3 123,853 - DZA65_RS00525 0.38 -0.1 123,884 - DZA65_RS00525 0.52 -1.1 123,884 - DZA65_RS00525 0.52 -0.9 123,900 + DZA65_RS00525 0.59 +0.0 123,901 - DZA65_RS00525 0.59 -0.4 123,957 - DZA65_RS00525 0.84 -1.0 123,957 - DZA65_RS00525 0.84 -0.6 123,957 - DZA65_RS00525 0.84 +1.1 123,957 - DZA65_RS00525 0.84 +0.4 123,978 + -1.9 123,979 - +0.4 124,005 - -0.2 124,043 + +1.1 124,103 - -0.2 124,115 + +0.7 124,115 + -0.7 124,115 + +0.1 124,115 + +0.1 124,116 - -0.4 124,116 - +0.5 124,116 - -0.2 124,116 - -0.4 124,116 - +1.3 124,116 - +0.3 124,116 - -0.5 124,124 + -1.4 124,124 + +1.1 124,124 + -3.3 124,124 + +0.2 124,124 + +0.9 124,125 - -0.4 124,309 + DZA65_RS00530 0.78 +0.3 124,358 + +0.4 124,358 + -0.3 124,358 + +0.4 124,359 - +0.1 124,359 - +0.1 124,362 + +0.2 124,362 + +0.4 124,362 + -0.4 124,362 + +1.4 124,363 - -0.6 124,363 - -1.9 124,363 - -0.9 124,363 - +0.9 124,363 - -1.0 124,416 + +0.1 124,435 + -0.1 124,440 + +0.7 124,440 + -2.1 124,440 + +0.4 124,440 + +1.4 124,440 + +1.4 124,441 - +1.1 124,441 - -0.9 124,499 + -0.1 124,502 + +0.2 124,526 + +0.4 124,526 + +0.5 124,527 - +0.4 124,530 + +0.3 124,530 + -0.9 124,530 + -0.3 124,530 + -0.3 124,531 - -0.2 124,531 - -2.3 124,531 - -0.6 124,531 - -0.5 124,531 - -0.2 124,554 + +0.9 124,554 + +0.6 124,554 + +0.6 124,617 - -0.0 124,635 - +0.1 124,636 + +0.4 124,636 + +0.4 124,637 - -1.1 124,637 - -1.0 124,650 + -0.2 124,685 + -0.9 124,685 + -0.4 124,686 - -0.8 124,703 + +0.4 124,703 + -0.6 124,835 + DZA65_RS00535 0.38 -0.6 124,835 + DZA65_RS00535 0.38 -0.3 124,836 - DZA65_RS00535 0.38 -1.6 124,924 - DZA65_RS00535 0.63 -0.4 124,932 + DZA65_RS00535 0.65 +0.6 124,933 - DZA65_RS00535 0.65 +0.0
Or see this region's nucleotide sequence