Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS19420 and DZA65_RS22985 are separated by 68 nucleotides DZA65_RS22985 and DZA65_RS19430 are separated by 118 nucleotides DZA65_RS19430 and DZA65_RS19435 are separated by 184 nucleotides
DZA65_RS19420: DZA65_RS19420 - bifunctional riboflavin kinase/FAD synthetase, at 4,201,987 to 4,202,928
_RS19420
DZA65_RS22985: DZA65_RS22985 - hypothetical protein, at 4,202,997 to 4,203,206
_RS22985
DZA65_RS19430: DZA65_RS19430 - 30S ribosomal protein S20, at 4,203,325 to 4,203,588
_RS19430
DZA65_RS19435: DZA65_RS19435 - Na+/H+ antiporter NhaA, at 4,203,773 to 4,204,948
_RS19435
Position (kb)
4202
4203
4204 Strain fitness (log2 ratio)
-2
-1
0
1 at 4202.929 kb on - strand at 4202.929 kb on - strand at 4202.963 kb on - strand at 4202.963 kb on - strand at 4202.963 kb on - strand at 4202.963 kb on - strand at 4202.963 kb on - strand at 4202.969 kb on + strand at 4202.970 kb on - strand at 4203.054 kb on + strand, within DZA65_RS22985 at 4203.055 kb on - strand, within DZA65_RS22985 at 4203.057 kb on - strand, within DZA65_RS22985 at 4203.131 kb on - strand, within DZA65_RS22985 at 4203.143 kb on + strand, within DZA65_RS22985 at 4203.711 kb on - strand at 4203.714 kb on - strand at 4203.742 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 4,202,929 - -0.9 4,202,929 - -1.1 4,202,963 - +0.4 4,202,963 - +1.0 4,202,963 - -0.3 4,202,963 - -0.3 4,202,963 - -0.1 4,202,969 + -0.3 4,202,970 - -0.0 4,203,054 + DZA65_RS22985 0.27 -0.9 4,203,055 - DZA65_RS22985 0.28 -2.4 4,203,057 - DZA65_RS22985 0.29 -0.4 4,203,131 - DZA65_RS22985 0.64 -0.8 4,203,143 + DZA65_RS22985 0.70 +0.0 4,203,711 - -0.3 4,203,714 - +1.0 4,203,742 - -1.1
Or see this region's nucleotide sequence