Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS22950

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
3,548,060	+				+2.1
3,548,061	-				-0.2
3,548,071	+				-0.7
3,548,071	+				-0.6
3,548,071	+				+0.9
3,548,071	+				+0.4
3,548,071	+				-1.0
3,548,071	+				-0.5
3,548,072	-				+1.2
3,548,072	-				-0.9
3,548,072	-				-2.1
3,548,075	+				-0.1
3,548,075	+				-0.6
3,548,085	+				-0.2
3,548,086	-				-1.2
3,548,104	+				+0.4
3,548,160	+		DZA65_RS16375	0.14	+0.5
3,548,161	-		DZA65_RS16375	0.15	-0.1
3,548,161	-		DZA65_RS16375	0.15	-0.2
3,548,165	+		DZA65_RS16375	0.16	-0.8
3,548,165	+		DZA65_RS16375	0.16	-0.3
3,548,166	-		DZA65_RS16375	0.16	-0.6
3,548,172	-		DZA65_RS16375	0.18	-0.0
3,548,172	-		DZA65_RS16375	0.18	-0.9
3,548,172	-		DZA65_RS16375	0.18	-2.1
3,548,183	+		DZA65_RS16375	0.22	-0.2
3,548,189	+		DZA65_RS16375	0.24	-0.5
3,548,196	+		DZA65_RS16375	0.26	+1.8
3,548,197	-		DZA65_RS16375	0.26	-0.3
3,548,212	-		DZA65_RS16375	0.31	-2.7
3,548,273	+		DZA65_RS16375	0.51	-0.3
3,548,274	-		DZA65_RS16375	0.51	+0.6
3,548,293	+		DZA65_RS16375	0.57	-1.2
3,548,293	+		DZA65_RS16375	0.57	+0.7
3,548,293	+		DZA65_RS16375	0.57	-0.8
3,548,293	+		DZA65_RS16375	0.57	+0.8
3,548,293	+		DZA65_RS16375	0.57	-0.9
3,548,325	-		DZA65_RS16375	0.67	-0.1
3,548,325	-		DZA65_RS16375	0.67	+2.7
3,548,325	-		DZA65_RS16375	0.67	+0.5
3,548,373	+		DZA65_RS16375	0.83	+0.6
3,548,426	+				-0.8
3,548,453	+				+0.1
3,548,453	+				-0.1
3,548,454	-				-0.8
3,548,454	-				-0.0
3,548,454	-				-0.1
3,548,456	-				-0.1
3,548,458	+				-0.2
3,548,467	+				-0.3
3,548,509	-				-0.7
3,548,541	+		DZA65_RS16380	0.14	+0.3
3,548,620	+		DZA65_RS16380	0.38	+1.1
3,548,620	+		DZA65_RS16380	0.38	-0.3
3,548,620	+		DZA65_RS16380	0.38	-0.8
3,548,621	-		DZA65_RS16380	0.38	-0.2
3,548,653	+		DZA65_RS16380	0.48	-0.8
3,548,653	+		DZA65_RS16380	0.48	-2.1
3,548,653	+		DZA65_RS16380	0.48	-1.0
3,548,654	-		DZA65_RS16380	0.48	-0.5
3,548,654	-		DZA65_RS16380	0.48	+0.2
3,548,684	-		DZA65_RS16380	0.58	+0.8
3,548,696	-		DZA65_RS16380	0.61	-1.3
3,548,753	+		DZA65_RS16380	0.79	+2.6
3,548,760	+		DZA65_RS16380	0.81	-0.3
3,548,761	-		DZA65_RS16380	0.81	+0.7
3,548,761	-		DZA65_RS16380	0.81	+0.1
3,548,761	-		DZA65_RS16380	0.81	-1.7
3,548,761	-		DZA65_RS16380	0.81	+0.2
3,548,761	-		DZA65_RS16380	0.81	-1.5
3,548,761	-		DZA65_RS16380	0.81	+1.7
3,548,783	-		DZA65_RS16380	0.88	+0.3
3,548,786	-		DZA65_RS16380	0.89	-0.4
3,548,821	-				-0.5
3,548,832	-				-0.7
3,548,850	+		DZA65_RS22950	0.13	-1.2
3,548,853	-		DZA65_RS22950	0.15	-2.1
3,548,853	-		DZA65_RS22950	0.15	+0.3
3,548,887	+		DZA65_RS22950	0.37	+0.1
3,548,887	+		DZA65_RS22950	0.37	-0.3
3,548,930	-		DZA65_RS22950	0.64	+0.9
3,548,950	+		DZA65_RS22950	0.77	-1.8
3,548,952	+		DZA65_RS22950	0.78	-0.7
3,548,953	-		DZA65_RS22950	0.79	+0.0
3,548,953	-		DZA65_RS22950	0.79	+1.0
3,548,953	-		DZA65_RS22950	0.79	-1.0
3,548,956	+		DZA65_RS22950	0.81	-1.1
3,548,957	-		DZA65_RS22950	0.81	+0.1
3,548,957	-		DZA65_RS22950	0.81	-1.7
3,548,957	-		DZA65_RS22950	0.81	-0.1
3,548,966	+		DZA65_RS22950	0.87	-0.7
3,548,967	-		DZA65_RS22950	0.88	-0.7
3,548,988	+				+0.9
3,548,988	+				-0.4
3,549,095	+				-0.7
3,549,107	+				-0.6
3,549,108	-				+0.1
3,549,140	+				+1.3
3,549,140	+				-0.8
3,549,140	+				-1.3
3,549,141	-				-0.1
3,549,228	-				-0.7
3,549,271	+		DZA65_RS16385	0.11	-0.6
3,549,290	-		DZA65_RS16385	0.12	-1.3
3,549,427	-		DZA65_RS16385	0.17	-0.6
3,549,469	+		DZA65_RS16385	0.19	-0.0
3,549,469	+		DZA65_RS16385	0.19	+0.5
3,549,469	+		DZA65_RS16385	0.19	+1.0
3,549,469	+		DZA65_RS16385	0.19	+1.0
3,549,470	-		DZA65_RS16385	0.19	-1.5
3,549,470	-				-1.1
3,549,547	-		DZA65_RS16385	0.22	+0.9
3,549,547	-		DZA65_RS16385	0.22	-1.9
3,549,610	-		DZA65_RS16385	0.24	-1.1
3,549,610	-		DZA65_RS16385	0.24	-1.1
3,549,610	-		DZA65_RS16385	0.24	-2.3
3,549,626	+		DZA65_RS16385	0.25	-0.9
3,549,646	+		DZA65_RS16385	0.26	-0.9
3,549,670	+		DZA65_RS16385	0.27	+0.1
3,549,671	-		DZA65_RS16385	0.27	+1.3
3,549,671	-		DZA65_RS16385	0.27	-0.4
3,549,671	-		DZA65_RS16385	0.27	-0.0
3,549,712	+		DZA65_RS16385	0.28	-0.1
3,549,712	+		DZA65_RS16385	0.28	-1.3
3,549,712	+		DZA65_RS16385	0.28	-0.2
3,549,713	-		DZA65_RS16385	0.29	-0.3
3,549,713	-		DZA65_RS16385	0.29	-0.9
3,549,713	-		DZA65_RS16385	0.29	+0.1
3,549,713	-		DZA65_RS16385	0.29	-0.7
3,549,725	+		DZA65_RS16385	0.29	+0.2
3,549,725	+		DZA65_RS16385	0.29	-1.7
3,549,725	+		DZA65_RS16385	0.29	-0.6
3,549,726	-		DZA65_RS16385	0.29	+0.3
3,549,726	-		DZA65_RS16385	0.29	+0.3
3,549,726	-		DZA65_RS16385	0.29	+0.3
3,549,726	-		DZA65_RS16385	0.29	+0.7
3,549,791	-		DZA65_RS16385	0.32	+1.7
3,549,791	-		DZA65_RS16385	0.32	-0.5
3,549,810	+		DZA65_RS16385	0.32	-0.7
3,549,810	+		DZA65_RS16385	0.32	+0.8
3,549,810	+		DZA65_RS16385	0.32	-0.7
3,549,810	+		DZA65_RS16385	0.32	-0.6
3,549,810	+		DZA65_RS16385	0.32	+0.4
3,549,810	+		DZA65_RS16385	0.32	+0.3
3,549,810	+				+1.3
3,549,810	+		DZA65_RS16385	0.32	-0.6
3,549,811	-		DZA65_RS16385	0.32	+0.9
3,549,811	-		DZA65_RS16385	0.32	+1.3
3,549,811	-		DZA65_RS16385	0.32	+0.1
3,549,811	-		DZA65_RS16385	0.32	+0.3
3,549,900	+		DZA65_RS16385	0.36	-0.6
3,549,900	+		DZA65_RS16385	0.36	-2.1
3,549,900	+		DZA65_RS16385	0.36	-0.8
3,549,900	+		DZA65_RS16385	0.36	+0.3
3,549,901	-		DZA65_RS16385	0.36	-0.7
3,549,901	-		DZA65_RS16385	0.36	+0.1
3,549,901	-		DZA65_RS16385	0.36	+0.3
3,549,901	-		DZA65_RS16385	0.36	+0.9
3,549,901	-		DZA65_RS16385	0.36	+0.9
3,549,904	+		DZA65_RS16385	0.36	+0.8
3,549,904	+		DZA65_RS16385	0.36	-1.1
3,549,904	+		DZA65_RS16385	0.36	+0.1
3,549,904	+		DZA65_RS16385	0.36	+0.4
3,549,904	+		DZA65_RS16385	0.36	-0.2
3,549,905	-		DZA65_RS16385	0.36	-0.6
3,549,905	-		DZA65_RS16385	0.36	+1.3
3,549,905	-		DZA65_RS16385	0.36	+0.0
3,549,905	-		DZA65_RS16385	0.36	-0.1