Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS21530 and DZA65_RS21535 are separated by 132 nucleotides DZA65_RS21535 and DZA65_RS21540 are separated by 109 nucleotides DZA65_RS21540 and DZA65_RS21545 are separated by 13 nucleotides
DZA65_RS21530: DZA65_RS21530 - glycerol kinase GlpK, at 4,656,759 to 4,658,270
_RS21530
DZA65_RS21535: DZA65_RS21535 - class II fructose-bisphosphatase, at 4,658,403 to 4,659,413
_RS21535
DZA65_RS21540: DZA65_RS21540 - ferredoxin--NADP(+) reductase, at 4,659,523 to 4,660,269
_RS21540
DZA65_RS21545: DZA65_RS21545 - DUF805 domain-containing protein, at 4,660,283 to 4,660,708
_RS21545
Position (kb) 4658
4659
4660 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 4657.435 kb on - strand, within DZA65_RS21530 at 4657.515 kb on + strand, within DZA65_RS21530 at 4657.515 kb on + strand, within DZA65_RS21530 at 4657.516 kb on - strand, within DZA65_RS21530 at 4657.516 kb on - strand, within DZA65_RS21530 at 4657.531 kb on + strand, within DZA65_RS21530 at 4657.532 kb on - strand, within DZA65_RS21530 at 4657.557 kb on + strand, within DZA65_RS21530 at 4657.557 kb on + strand, within DZA65_RS21530 at 4657.557 kb on + strand, within DZA65_RS21530 at 4657.558 kb on - strand, within DZA65_RS21530 at 4657.657 kb on + strand, within DZA65_RS21530 at 4657.657 kb on + strand, within DZA65_RS21530 at 4657.658 kb on - strand, within DZA65_RS21530 at 4657.658 kb on - strand, within DZA65_RS21530 at 4657.658 kb on - strand, within DZA65_RS21530 at 4657.658 kb on - strand, within DZA65_RS21530 at 4657.662 kb on + strand, within DZA65_RS21530 at 4657.662 kb on + strand at 4657.662 kb on + strand, within DZA65_RS21530 at 4657.662 kb on + strand, within DZA65_RS21530 at 4657.662 kb on + strand, within DZA65_RS21530 at 4657.662 kb on + strand, within DZA65_RS21530 at 4657.662 kb on + strand, within DZA65_RS21530 at 4657.662 kb on + strand at 4657.662 kb on + strand, within DZA65_RS21530 at 4657.662 kb on + strand, within DZA65_RS21530 at 4657.662 kb on + strand, within DZA65_RS21530 at 4657.662 kb on + strand, within DZA65_RS21530 at 4657.663 kb on - strand, within DZA65_RS21530 at 4657.663 kb on - strand, within DZA65_RS21530 at 4657.663 kb on - strand, within DZA65_RS21530 at 4657.663 kb on - strand, within DZA65_RS21530 at 4657.663 kb on - strand, within DZA65_RS21530 at 4657.663 kb on - strand, within DZA65_RS21530 at 4657.663 kb on - strand, within DZA65_RS21530 at 4657.663 kb on - strand, within DZA65_RS21530 at 4657.663 kb on - strand, within DZA65_RS21530 at 4657.663 kb on - strand, within DZA65_RS21530 at 4657.663 kb on - strand, within DZA65_RS21530 at 4657.755 kb on + strand, within DZA65_RS21530 at 4657.791 kb on + strand, within DZA65_RS21530 at 4657.791 kb on + strand, within DZA65_RS21530 at 4657.791 kb on + strand, within DZA65_RS21530 at 4657.791 kb on + strand, within DZA65_RS21530 at 4657.791 kb on + strand, within DZA65_RS21530 at 4657.792 kb on - strand, within DZA65_RS21530 at 4657.792 kb on - strand, within DZA65_RS21530 at 4657.792 kb on - strand, within DZA65_RS21530 at 4657.792 kb on - strand, within DZA65_RS21530 at 4657.792 kb on - strand, within DZA65_RS21530 at 4657.792 kb on - strand, within DZA65_RS21530 at 4657.792 kb on - strand, within DZA65_RS21530 at 4657.792 kb on - strand, within DZA65_RS21530 at 4657.792 kb on - strand, within DZA65_RS21530 at 4657.792 kb on - strand, within DZA65_RS21530 at 4657.828 kb on - strand, within DZA65_RS21530 at 4657.921 kb on - strand, within DZA65_RS21530 at 4658.194 kb on + strand at 4658.194 kb on + strand at 4658.194 kb on + strand at 4658.195 kb on - strand at 4658.353 kb on + strand at 4658.354 kb on - strand at 4658.358 kb on + strand at 4658.358 kb on + strand at 4658.358 kb on + strand at 4658.358 kb on + strand at 4658.358 kb on + strand at 4658.358 kb on + strand at 4658.359 kb on - strand at 4658.359 kb on - strand at 4658.359 kb on - strand at 4658.359 kb on - strand at 4658.359 kb on - strand at 4658.359 kb on - strand at 4658.370 kb on + strand at 4658.370 kb on + strand at 4658.370 kb on + strand at 4658.371 kb on - strand at 4658.378 kb on + strand at 4658.378 kb on + strand at 4658.398 kb on + strand at 4658.399 kb on - strand at 4658.399 kb on - strand at 4658.416 kb on + strand at 4658.416 kb on + strand at 4658.416 kb on + strand at 4658.417 kb on - strand at 4658.601 kb on + strand, within DZA65_RS21535 at 4658.601 kb on + strand, within DZA65_RS21535 at 4658.601 kb on + strand, within DZA65_RS21535 at 4658.601 kb on + strand, within DZA65_RS21535 at 4658.601 kb on + strand, within DZA65_RS21535 at 4658.601 kb on + strand at 4658.602 kb on - strand, within DZA65_RS21535 at 4658.602 kb on - strand, within DZA65_RS21535 at 4658.602 kb on - strand, within DZA65_RS21535 at 4658.602 kb on - strand, within DZA65_RS21535 at 4658.602 kb on - strand, within DZA65_RS21535 at 4658.602 kb on - strand, within DZA65_RS21535 at 4658.602 kb on - strand, within DZA65_RS21535 at 4658.602 kb on - strand, within DZA65_RS21535 at 4658.602 kb on - strand, within DZA65_RS21535 at 4658.757 kb on + strand, within DZA65_RS21535 at 4658.757 kb on + strand, within DZA65_RS21535 at 4658.757 kb on + strand, within DZA65_RS21535 at 4658.757 kb on + strand, within DZA65_RS21535 at 4658.757 kb on + strand, within DZA65_RS21535 at 4658.757 kb on + strand, within DZA65_RS21535 at 4658.757 kb on + strand, within DZA65_RS21535 at 4658.757 kb on + strand, within DZA65_RS21535 at 4658.757 kb on + strand, within DZA65_RS21535 at 4658.757 kb on + strand, within DZA65_RS21535 at 4658.757 kb on + strand, within DZA65_RS21535 at 4658.757 kb on + strand, within DZA65_RS21535 at 4658.757 kb on + strand, within DZA65_RS21535 at 4658.757 kb on + strand, within DZA65_RS21535 at 4658.757 kb on + strand, within DZA65_RS21535 at 4658.757 kb on + strand, within DZA65_RS21535 at 4658.757 kb on + strand, within DZA65_RS21535 at 4658.757 kb on + strand, within DZA65_RS21535 at 4658.757 kb on + strand, within DZA65_RS21535 at 4658.757 kb on + strand, within DZA65_RS21535 at 4658.758 kb on - strand, within DZA65_RS21535 at 4658.758 kb on - strand, within DZA65_RS21535 at 4658.758 kb on - strand, within DZA65_RS21535 at 4658.758 kb on - strand, within DZA65_RS21535 at 4658.758 kb on - strand, within DZA65_RS21535 at 4658.758 kb on - strand, within DZA65_RS21535 at 4658.758 kb on - strand, within DZA65_RS21535 at 4658.758 kb on - strand, within DZA65_RS21535 at 4658.758 kb on - strand, within DZA65_RS21535 at 4658.758 kb on - strand, within DZA65_RS21535 at 4658.758 kb on - strand, within DZA65_RS21535 at 4658.758 kb on - strand, within DZA65_RS21535 at 4658.758 kb on - strand, within DZA65_RS21535 at 4658.938 kb on + strand, within DZA65_RS21535 at 4658.939 kb on - strand, within DZA65_RS21535 at 4658.939 kb on - strand, within DZA65_RS21535 at 4658.951 kb on + strand, within DZA65_RS21535 at 4658.979 kb on - strand, within DZA65_RS21535 at 4658.979 kb on - strand, within DZA65_RS21535 at 4659.018 kb on + strand, within DZA65_RS21535 at 4659.018 kb on + strand, within DZA65_RS21535 at 4659.018 kb on + strand, within DZA65_RS21535 at 4659.018 kb on + strand, within DZA65_RS21535 at 4659.019 kb on - strand, within DZA65_RS21535 at 4659.019 kb on - strand, within DZA65_RS21535 at 4659.019 kb on - strand, within DZA65_RS21535 at 4659.019 kb on - strand, within DZA65_RS21535 at 4659.047 kb on + strand, within DZA65_RS21535 at 4659.048 kb on - strand, within DZA65_RS21535 at 4659.048 kb on - strand, within DZA65_RS21535 at 4659.238 kb on + strand, within DZA65_RS21535 at 4659.362 kb on + strand at 4659.362 kb on + strand at 4659.363 kb on - strand at 4659.363 kb on - strand at 4659.412 kb on - strand at 4659.446 kb on + strand at 4659.447 kb on - strand at 4659.464 kb on - strand at 4659.516 kb on + strand at 4659.516 kb on + strand at 4659.516 kb on + strand at 4659.516 kb on + strand at 4659.516 kb on + strand at 4659.516 kb on + strand at 4659.517 kb on - strand at 4659.517 kb on - strand at 4659.517 kb on - strand at 4659.517 kb on - strand at 4659.517 kb on - strand at 4659.517 kb on - strand at 4659.578 kb on + strand at 4659.578 kb on + strand at 4659.579 kb on - strand at 4659.676 kb on + strand, within DZA65_RS21540 at 4659.676 kb on + strand, within DZA65_RS21540 at 4659.677 kb on - strand, within DZA65_RS21540 at 4659.677 kb on - strand, within DZA65_RS21540 at 4659.677 kb on - strand, within DZA65_RS21540 at 4659.682 kb on + strand, within DZA65_RS21540 at 4659.682 kb on + strand, within DZA65_RS21540 at 4659.682 kb on + strand, within DZA65_RS21540 at 4659.682 kb on + strand, within DZA65_RS21540 at 4659.683 kb on - strand, within DZA65_RS21540 at 4659.683 kb on - strand at 4659.683 kb on - strand, within DZA65_RS21540 at 4659.683 kb on - strand, within DZA65_RS21540 at 4659.683 kb on - strand, within DZA65_RS21540 at 4659.683 kb on - strand, within DZA65_RS21540 at 4659.683 kb on - strand, within DZA65_RS21540 at 4659.719 kb on - strand, within DZA65_RS21540 at 4659.883 kb on + strand, within DZA65_RS21540 at 4659.941 kb on + strand, within DZA65_RS21540 at 4659.942 kb on - strand, within DZA65_RS21540 at 4660.006 kb on + strand, within DZA65_RS21540 at 4660.006 kb on + strand, within DZA65_RS21540 at 4660.006 kb on + strand, within DZA65_RS21540 at 4660.245 kb on + strand at 4660.245 kb on + strand at 4660.245 kb on + strand at 4660.246 kb on - strand at 4660.246 kb on - strand at 4660.261 kb on + strand at 4660.262 kb on - strand at 4660.262 kb on - strand at 4660.262 kb on - strand at 4660.262 kb on - strand at 4660.267 kb on + strand at 4660.268 kb on - strand at 4660.277 kb on + strand at 4660.331 kb on + strand, within DZA65_RS21545 at 4660.332 kb on - strand, within DZA65_RS21545 at 4660.343 kb on - strand, within DZA65_RS21545 at 4660.382 kb on - strand, within DZA65_RS21545
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 4,657,435 - DZA65_RS21530 0.45 -0.6 4,657,515 + DZA65_RS21530 0.50 -1.3 4,657,515 + DZA65_RS21530 0.50 +0.0 4,657,516 - DZA65_RS21530 0.50 -0.1 4,657,516 - DZA65_RS21530 0.50 -0.1 4,657,531 + DZA65_RS21530 0.51 +0.4 4,657,532 - DZA65_RS21530 0.51 +0.4 4,657,557 + DZA65_RS21530 0.53 -0.1 4,657,557 + DZA65_RS21530 0.53 +0.2 4,657,557 + DZA65_RS21530 0.53 +1.0 4,657,558 - DZA65_RS21530 0.53 +0.2 4,657,657 + DZA65_RS21530 0.59 -0.5 4,657,657 + DZA65_RS21530 0.59 -0.4 4,657,658 - DZA65_RS21530 0.59 +1.1 4,657,658 - DZA65_RS21530 0.59 +0.3 4,657,658 - DZA65_RS21530 0.59 +1.2 4,657,658 - DZA65_RS21530 0.59 +2.6 4,657,662 + DZA65_RS21530 0.60 -0.2 4,657,662 + +2.0 4,657,662 + DZA65_RS21530 0.60 +0.2 4,657,662 + DZA65_RS21530 0.60 -0.1 4,657,662 + DZA65_RS21530 0.60 +0.4 4,657,662 + DZA65_RS21530 0.60 -1.0 4,657,662 + DZA65_RS21530 0.60 -0.1 4,657,662 + +0.8 4,657,662 + DZA65_RS21530 0.60 +1.8 4,657,662 + DZA65_RS21530 0.60 -0.3 4,657,662 + DZA65_RS21530 0.60 -0.6 4,657,662 + DZA65_RS21530 0.60 +0.9 4,657,663 - DZA65_RS21530 0.60 -0.2 4,657,663 - DZA65_RS21530 0.60 +0.0 4,657,663 - DZA65_RS21530 0.60 -1.1 4,657,663 - DZA65_RS21530 0.60 -0.1 4,657,663 - DZA65_RS21530 0.60 -0.4 4,657,663 - DZA65_RS21530 0.60 +0.0 4,657,663 - DZA65_RS21530 0.60 -0.2 4,657,663 - DZA65_RS21530 0.60 -2.0 4,657,663 - DZA65_RS21530 0.60 +0.5 4,657,663 - DZA65_RS21530 0.60 -0.3 4,657,663 - DZA65_RS21530 0.60 +0.0 4,657,755 + DZA65_RS21530 0.66 -0.4 4,657,791 + DZA65_RS21530 0.68 +0.2 4,657,791 + DZA65_RS21530 0.68 +0.1 4,657,791 + DZA65_RS21530 0.68 +2.0 4,657,791 + DZA65_RS21530 0.68 -0.9 4,657,791 + DZA65_RS21530 0.68 -0.2 4,657,792 - DZA65_RS21530 0.68 +0.0 4,657,792 - DZA65_RS21530 0.68 +0.9 4,657,792 - DZA65_RS21530 0.68 +1.3 4,657,792 - DZA65_RS21530 0.68 +0.4 4,657,792 - DZA65_RS21530 0.68 +1.2 4,657,792 - DZA65_RS21530 0.68 +1.6 4,657,792 - DZA65_RS21530 0.68 -0.6 4,657,792 - DZA65_RS21530 0.68 -0.7 4,657,792 - DZA65_RS21530 0.68 -1.7 4,657,792 - DZA65_RS21530 0.68 -0.1 4,657,828 - DZA65_RS21530 0.71 -0.3 4,657,921 - DZA65_RS21530 0.77 -0.1 4,658,194 + -0.9 4,658,194 + -0.7 4,658,194 + +0.1 4,658,195 - +0.4 4,658,353 + -0.1 4,658,354 - +0.3 4,658,358 + +0.7 4,658,358 + -0.1 4,658,358 + -0.9 4,658,358 + -0.7 4,658,358 + -0.2 4,658,358 + +0.0 4,658,359 - -1.7 4,658,359 - -0.2 4,658,359 - -1.2 4,658,359 - -0.5 4,658,359 - -0.2 4,658,359 - +0.4 4,658,370 + -0.4 4,658,370 + -0.1 4,658,370 + +0.0 4,658,371 - -0.2 4,658,378 + -0.2 4,658,378 + +0.1 4,658,398 + +1.2 4,658,399 - -1.2 4,658,399 - +0.2 4,658,416 + +1.3 4,658,416 + +0.8 4,658,416 + +1.3 4,658,417 - +0.6 4,658,601 + DZA65_RS21535 0.20 +0.0 4,658,601 + DZA65_RS21535 0.20 +0.9 4,658,601 + DZA65_RS21535 0.20 -0.7 4,658,601 + DZA65_RS21535 0.20 -0.5 4,658,601 + DZA65_RS21535 0.20 +0.6 4,658,601 + +0.6 4,658,602 - DZA65_RS21535 0.20 -0.1 4,658,602 - DZA65_RS21535 0.20 +1.3 4,658,602 - DZA65_RS21535 0.20 +0.7 4,658,602 - DZA65_RS21535 0.20 -0.7 4,658,602 - DZA65_RS21535 0.20 -0.8 4,658,602 - DZA65_RS21535 0.20 +0.4 4,658,602 - DZA65_RS21535 0.20 -0.1 4,658,602 - DZA65_RS21535 0.20 +0.6 4,658,602 - DZA65_RS21535 0.20 +1.4 4,658,757 + DZA65_RS21535 0.35 +0.5 4,658,757 + DZA65_RS21535 0.35 +2.0 4,658,757 + DZA65_RS21535 0.35 +0.9 4,658,757 + DZA65_RS21535 0.35 +3.2 4,658,757 + DZA65_RS21535 0.35 +0.1 4,658,757 + DZA65_RS21535 0.35 -0.7 4,658,757 + DZA65_RS21535 0.35 +0.8 4,658,757 + DZA65_RS21535 0.35 -1.0 4,658,757 + DZA65_RS21535 0.35 -0.5 4,658,757 + DZA65_RS21535 0.35 -0.1 4,658,757 + DZA65_RS21535 0.35 -0.3 4,658,757 + DZA65_RS21535 0.35 +2.0 4,658,757 + DZA65_RS21535 0.35 +0.8 4,658,757 + DZA65_RS21535 0.35 +0.3 4,658,757 + DZA65_RS21535 0.35 -0.5 4,658,757 + DZA65_RS21535 0.35 +0.1 4,658,757 + DZA65_RS21535 0.35 +0.0 4,658,757 + DZA65_RS21535 0.35 +0.8 4,658,757 + DZA65_RS21535 0.35 +0.7 4,658,757 + DZA65_RS21535 0.35 -0.4 4,658,758 - DZA65_RS21535 0.35 -0.6 4,658,758 - DZA65_RS21535 0.35 +0.4 4,658,758 - DZA65_RS21535 0.35 -0.4 4,658,758 - DZA65_RS21535 0.35 -0.2 4,658,758 - DZA65_RS21535 0.35 +0.0 4,658,758 - DZA65_RS21535 0.35 -1.4 4,658,758 - DZA65_RS21535 0.35 +0.9 4,658,758 - DZA65_RS21535 0.35 -1.4 4,658,758 - DZA65_RS21535 0.35 +0.1 4,658,758 - DZA65_RS21535 0.35 -1.4 4,658,758 - DZA65_RS21535 0.35 +0.9 4,658,758 - DZA65_RS21535 0.35 +1.0 4,658,758 - DZA65_RS21535 0.35 -2.0 4,658,938 + DZA65_RS21535 0.53 +0.2 4,658,939 - DZA65_RS21535 0.53 -0.2 4,658,939 - DZA65_RS21535 0.53 +0.2 4,658,951 + DZA65_RS21535 0.54 +0.4 4,658,979 - DZA65_RS21535 0.57 +0.6 4,658,979 - DZA65_RS21535 0.57 -0.4 4,659,018 + DZA65_RS21535 0.61 +0.3 4,659,018 + DZA65_RS21535 0.61 +0.2 4,659,018 + DZA65_RS21535 0.61 +0.6 4,659,018 + DZA65_RS21535 0.61 -1.4 4,659,019 - DZA65_RS21535 0.61 -0.7 4,659,019 - DZA65_RS21535 0.61 -0.8 4,659,019 - DZA65_RS21535 0.61 +0.3 4,659,019 - DZA65_RS21535 0.61 +0.3 4,659,047 + DZA65_RS21535 0.64 +0.5 4,659,048 - DZA65_RS21535 0.64 +1.1 4,659,048 - DZA65_RS21535 0.64 +0.1 4,659,238 + DZA65_RS21535 0.83 +0.1 4,659,362 + -0.7 4,659,362 + -0.5 4,659,363 - -1.0 4,659,363 - -2.7 4,659,412 - -0.3 4,659,446 + -0.0 4,659,447 - -1.5 4,659,464 - +0.6 4,659,516 + -0.5 4,659,516 + +0.0 4,659,516 + -1.2 4,659,516 + -0.4 4,659,516 + +1.4 4,659,516 + +0.1 4,659,517 - +0.1 4,659,517 - +0.2 4,659,517 - +0.2 4,659,517 - -0.3 4,659,517 - +2.0 4,659,517 - -0.6 4,659,578 + -0.3 4,659,578 + -0.6 4,659,579 - +1.2 4,659,676 + DZA65_RS21540 0.20 +0.7 4,659,676 + DZA65_RS21540 0.20 +1.1 4,659,677 - DZA65_RS21540 0.21 -0.4 4,659,677 - DZA65_RS21540 0.21 +1.1 4,659,677 - DZA65_RS21540 0.21 +0.9 4,659,682 + DZA65_RS21540 0.21 +0.8 4,659,682 + DZA65_RS21540 0.21 -1.9 4,659,682 + DZA65_RS21540 0.21 +0.4 4,659,682 + DZA65_RS21540 0.21 -1.0 4,659,683 - DZA65_RS21540 0.21 +1.6 4,659,683 - +0.0 4,659,683 - DZA65_RS21540 0.21 -0.6 4,659,683 - DZA65_RS21540 0.21 -0.7 4,659,683 - DZA65_RS21540 0.21 -0.6 4,659,683 - DZA65_RS21540 0.21 -1.0 4,659,683 - DZA65_RS21540 0.21 -0.2 4,659,719 - DZA65_RS21540 0.26 -1.2 4,659,883 + DZA65_RS21540 0.48 -0.4 4,659,941 + DZA65_RS21540 0.56 +0.7 4,659,942 - DZA65_RS21540 0.56 +0.4 4,660,006 + DZA65_RS21540 0.65 -0.7 4,660,006 + DZA65_RS21540 0.65 +0.8 4,660,006 + DZA65_RS21540 0.65 -0.2 4,660,245 + +0.3 4,660,245 + -0.4 4,660,245 + -0.3 4,660,246 - -0.5 4,660,246 - +0.3 4,660,261 + -0.1 4,660,262 - -1.0 4,660,262 - -0.7 4,660,262 - -0.3 4,660,262 - +0.6 4,660,267 + -0.6 4,660,268 - +0.4 4,660,277 + -0.3 4,660,331 + DZA65_RS21545 0.11 -1.2 4,660,332 - DZA65_RS21545 0.12 +0.2 4,660,343 - DZA65_RS21545 0.14 -0.2 4,660,382 - DZA65_RS21545 0.23 -0.2
Or see this region's nucleotide sequence