Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS20015

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS20005 and DZA65_RS20010 are separated by 235 nucleotidesDZA65_RS20010 and DZA65_RS20015 are separated by 12 nucleotidesDZA65_RS20015 and DZA65_RS20020 are separated by 101 nucleotides DZA65_RS20005: DZA65_RS20005 - helix-turn-helix transcriptional regulator, at 4,327,884 to 4,328,141 _RS20005 DZA65_RS20010: DZA65_RS20010 - protein nifY, at 4,328,377 to 4,329,039 _RS20010 DZA65_RS20015: DZA65_RS20015 - protein nifT, at 4,329,052 to 4,329,270 _RS20015 DZA65_RS20020: DZA65_RS20020 - nitrogenase molybdenum-iron protein subunit beta, at 4,329,372 to 4,330,940 _RS20020 Position (kb) 4329 4330Strain fitness (log2 ratio) -2 -1 0 1 2at 4328.123 kb on + strandat 4328.123 kb on + strandat 4328.123 kb on + strandat 4328.124 kb on - strandat 4328.183 kb on + strandat 4328.199 kb on - strandat 4328.199 kb on - strandat 4328.204 kb on + strandat 4328.205 kb on - strandat 4328.206 kb on + strandat 4328.206 kb on + strandat 4328.207 kb on - strandat 4328.207 kb on - strandat 4328.210 kb on + strandat 4328.222 kb on + strandat 4328.222 kb on + strandat 4328.244 kb on - strandat 4328.252 kb on + strandat 4328.348 kb on + strandat 4328.348 kb on + strandat 4328.348 kb on + strandat 4328.349 kb on - strandat 4328.349 kb on - strandat 4328.349 kb on - strandat 4328.349 kb on - strandat 4328.349 kb on - strandat 4328.349 kb on - strandat 4328.362 kb on + strandat 4328.363 kb on - strandat 4328.363 kb on - strandat 4328.370 kb on + strandat 4328.370 kb on + strandat 4328.370 kb on + strandat 4328.371 kb on - strandat 4328.371 kb on - strandat 4328.388 kb on + strandat 4328.388 kb on + strandat 4328.389 kb on - strandat 4328.389 kb on - strandat 4328.389 kb on - strandat 4328.389 kb on - strandat 4328.533 kb on - strand, within DZA65_RS20010at 4328.602 kb on + strand, within DZA65_RS20010at 4328.602 kb on + strand, within DZA65_RS20010at 4328.603 kb on - strand, within DZA65_RS20010at 4328.603 kb on - strand, within DZA65_RS20010at 4328.603 kb on - strand, within DZA65_RS20010at 4328.684 kb on + strand, within DZA65_RS20010at 4328.684 kb on + strand, within DZA65_RS20010at 4328.685 kb on - strand, within DZA65_RS20010at 4328.685 kb on - strand, within DZA65_RS20010at 4328.685 kb on - strand, within DZA65_RS20010at 4328.689 kb on - strand, within DZA65_RS20010at 4328.722 kb on - strand, within DZA65_RS20010at 4329.122 kb on + strand, within DZA65_RS20015at 4329.122 kb on + strand, within DZA65_RS20015at 4329.122 kb on + strand, within DZA65_RS20015at 4329.122 kb on + strand, within DZA65_RS20015at 4329.122 kb on + strand, within DZA65_RS20015at 4329.122 kb on + strand, within DZA65_RS20015at 4329.122 kb on + strand, within DZA65_RS20015at 4329.122 kb on + strand, within DZA65_RS20015at 4329.122 kb on + strand, within DZA65_RS20015at 4329.122 kb on + strand, within DZA65_RS20015at 4329.123 kb on - strand, within DZA65_RS20015at 4329.123 kb on - strand, within DZA65_RS20015at 4329.123 kb on - strand, within DZA65_RS20015at 4329.123 kb on - strand, within DZA65_RS20015at 4329.123 kb on - strand, within DZA65_RS20015at 4329.123 kb on - strand, within DZA65_RS20015at 4329.123 kb on - strand, within DZA65_RS20015at 4329.123 kb on - strand, within DZA65_RS20015at 4329.125 kb on + strand, within DZA65_RS20015at 4329.125 kb on + strand, within DZA65_RS20015at 4329.125 kb on + strand, within DZA65_RS20015at 4329.125 kb on + strand, within DZA65_RS20015at 4329.125 kb on + strand, within DZA65_RS20015at 4329.125 kb on + strand, within DZA65_RS20015at 4329.125 kb on + strand, within DZA65_RS20015at 4329.164 kb on + strand, within DZA65_RS20015at 4329.193 kb on + strand, within DZA65_RS20015at 4329.193 kb on + strandat 4329.194 kb on - strand, within DZA65_RS20015at 4329.224 kb on + strand, within DZA65_RS20015at 4329.224 kb on + strand, within DZA65_RS20015at 4329.224 kb on + strand, within DZA65_RS20015at 4329.224 kb on + strand, within DZA65_RS20015at 4329.225 kb on - strand, within DZA65_RS20015at 4329.225 kb on - strand, within DZA65_RS20015at 4329.225 kb on - strand, within DZA65_RS20015at 4329.225 kb on - strand, within DZA65_RS20015at 4329.225 kb on - strand, within DZA65_RS20015at 4329.225 kb on - strand, within DZA65_RS20015at 4329.225 kb on - strand, within DZA65_RS20015at 4329.225 kb on - strand, within DZA65_RS20015at 4329.230 kb on + strand, within DZA65_RS20015at 4329.230 kb on + strand, within DZA65_RS20015at 4329.230 kb on + strand, within DZA65_RS20015at 4329.231 kb on - strand, within DZA65_RS20015at 4329.231 kb on - strand, within DZA65_RS20015at 4329.231 kb on - strand, within DZA65_RS20015at 4329.323 kb on - strandat 4329.394 kb on + strandat 4329.394 kb on + strandat 4329.394 kb on + strandat 4329.394 kb on + strandat 4329.394 kb on + strandat 4329.484 kb on + strandat 4329.485 kb on - strandat 4329.604 kb on + strand, within DZA65_RS20020at 4329.679 kb on + strand, within DZA65_RS20020at 4329.679 kb on + strand, within DZA65_RS20020at 4329.679 kb on + strand, within DZA65_RS20020at 4329.679 kb on + strand, within DZA65_RS20020at 4329.679 kb on + strand, within DZA65_RS20020at 4329.679 kb on + strand, within DZA65_RS20020at 4329.679 kb on + strand, within DZA65_RS20020at 4329.679 kb on + strand, within DZA65_RS20020at 4329.680 kb on - strand, within DZA65_RS20020at 4329.680 kb on - strand, within DZA65_RS20020at 4329.680 kb on - strand, within DZA65_RS20020at 4329.680 kb on - strand, within DZA65_RS20020at 4329.680 kb on - strand, within DZA65_RS20020at 4329.680 kb on - strand, within DZA65_RS20020at 4329.680 kb on - strand, within DZA65_RS20020at 4329.680 kb on - strand, within DZA65_RS20020at 4329.680 kb on - strand, within DZA65_RS20020at 4330.129 kb on + strand, within DZA65_RS20020at 4330.129 kb on + strand, within DZA65_RS20020at 4330.129 kb on + strand, within DZA65_RS20020at 4330.130 kb on - strand, within DZA65_RS20020at 4330.130 kb on - strand, within DZA65_RS20020at 4330.130 kb on - strand, within DZA65_RS20020at 4330.130 kb on - strand, within DZA65_RS20020at 4330.130 kb on - strand, within DZA65_RS20020at 4330.130 kb on - strand, within DZA65_RS20020at 4330.133 kb on + strand, within DZA65_RS20020at 4330.133 kb on + strand, within DZA65_RS20020at 4330.133 kb on + strand, within DZA65_RS20020at 4330.133 kb on + strand, within DZA65_RS20020at 4330.133 kb on + strand, within DZA65_RS20020at 4330.133 kb on + strandat 4330.133 kb on + strand, within DZA65_RS20020at 4330.133 kb on + strand, within DZA65_RS20020at 4330.133 kb on + strand, within DZA65_RS20020at 4330.133 kb on + strand, within DZA65_RS20020at 4330.133 kb on + strand, within DZA65_RS20020at 4330.133 kb on + strand, within DZA65_RS20020at 4330.134 kb on - strand, within DZA65_RS20020at 4330.134 kb on - strand, within DZA65_RS20020at 4330.134 kb on - strand, within DZA65_RS20020at 4330.134 kb on - strand, within DZA65_RS20020at 4330.134 kb on - strand, within DZA65_RS20020at 4330.134 kb on - strand, within DZA65_RS20020at 4330.134 kb on - strand, within DZA65_RS20020at 4330.134 kb on - strand, within DZA65_RS20020at 4330.134 kb on - strandat 4330.134 kb on - strand, within DZA65_RS20020at 4330.139 kb on - strand, within DZA65_RS20020at 4330.234 kb on + strand, within DZA65_RS20020at 4330.234 kb on + strand, within DZA65_RS20020at 4330.246 kb on + strand, within DZA65_RS20020at 4330.246 kb on + strand, within DZA65_RS20020at 4330.247 kb on - strand, within DZA65_RS20020at 4330.247 kb on - strand, within DZA65_RS20020at 4330.247 kb on - strand, within DZA65_RS20020at 4330.247 kb on - strand, within DZA65_RS20020

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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4,328,123 + -0.3
4,328,123 + -2.2
4,328,123 + -0.3
4,328,124 - -1.0
4,328,183 + -0.3
4,328,199 - +0.8
4,328,199 - +0.8
4,328,204 + +0.4
4,328,205 - +0.3
4,328,206 + +0.1
4,328,206 + +1.5
4,328,207 - -0.2
4,328,207 - +0.8
4,328,210 + -0.3
4,328,222 + +0.2
4,328,222 + -0.5
4,328,244 - +0.0
4,328,252 + +1.2
4,328,348 + +0.7
4,328,348 + -1.1
4,328,348 + -0.8
4,328,349 - +1.5
4,328,349 - -0.6
4,328,349 - -0.2
4,328,349 - -0.5
4,328,349 - -2.6
4,328,349 - +0.5
4,328,362 + +1.2
4,328,363 - +0.5
4,328,363 - +0.1
4,328,370 + -0.3
4,328,370 + +0.1
4,328,370 + -0.5
4,328,371 - +0.3
4,328,371 - -0.1
4,328,388 + -0.6
4,328,388 + +0.2
4,328,389 - -0.0
4,328,389 - -0.6
4,328,389 - +1.5
4,328,389 - -1.3
4,328,533 - DZA65_RS20010 0.24 -0.8
4,328,602 + DZA65_RS20010 0.34 -0.2
4,328,602 + DZA65_RS20010 0.34 +1.8
4,328,603 - DZA65_RS20010 0.34 +0.7
4,328,603 - DZA65_RS20010 0.34 -0.3
4,328,603 - DZA65_RS20010 0.34 -0.3
4,328,684 + DZA65_RS20010 0.46 +0.3
4,328,684 + DZA65_RS20010 0.46 +0.5
4,328,685 - DZA65_RS20010 0.46 +0.2
4,328,685 - DZA65_RS20010 0.46 +0.2
4,328,685 - DZA65_RS20010 0.46 +0.2
4,328,689 - DZA65_RS20010 0.47 +0.8
4,328,722 - DZA65_RS20010 0.52 -2.0
4,329,122 + DZA65_RS20015 0.32 -1.2
4,329,122 + DZA65_RS20015 0.32 +0.0
4,329,122 + DZA65_RS20015 0.32 -0.6
4,329,122 + DZA65_RS20015 0.32 +1.0
4,329,122 + DZA65_RS20015 0.32 +2.5
4,329,122 + DZA65_RS20015 0.32 +0.4
4,329,122 + DZA65_RS20015 0.32 -0.7
4,329,122 + DZA65_RS20015 0.32 +0.3
4,329,122 + DZA65_RS20015 0.32 +0.4
4,329,122 + DZA65_RS20015 0.32 -0.3
4,329,123 - DZA65_RS20015 0.32 -0.5
4,329,123 - DZA65_RS20015 0.32 -0.5
4,329,123 - DZA65_RS20015 0.32 +0.8
4,329,123 - DZA65_RS20015 0.32 -0.0
4,329,123 - DZA65_RS20015 0.32 +0.7
4,329,123 - DZA65_RS20015 0.32 +0.6
4,329,123 - DZA65_RS20015 0.32 +0.3
4,329,123 - DZA65_RS20015 0.32 -0.2
4,329,125 + DZA65_RS20015 0.33 +0.7
4,329,125 + DZA65_RS20015 0.33 +0.2
4,329,125 + DZA65_RS20015 0.33 +0.5
4,329,125 + DZA65_RS20015 0.33 -0.6
4,329,125 + DZA65_RS20015 0.33 -0.3
4,329,125 + DZA65_RS20015 0.33 +0.7
4,329,125 + DZA65_RS20015 0.33 +1.3
4,329,164 + DZA65_RS20015 0.51 +1.5
4,329,193 + DZA65_RS20015 0.64 -1.1
4,329,193 + +0.5
4,329,194 - DZA65_RS20015 0.65 -1.9
4,329,224 + DZA65_RS20015 0.79 -2.4
4,329,224 + DZA65_RS20015 0.79 +1.5
4,329,224 + DZA65_RS20015 0.79 -0.5
4,329,224 + DZA65_RS20015 0.79 -0.8
4,329,225 - DZA65_RS20015 0.79 +0.5
4,329,225 - DZA65_RS20015 0.79 -0.1
4,329,225 - DZA65_RS20015 0.79 -0.6
4,329,225 - DZA65_RS20015 0.79 -0.1
4,329,225 - DZA65_RS20015 0.79 -1.1
4,329,225 - DZA65_RS20015 0.79 -1.3
4,329,225 - DZA65_RS20015 0.79 -0.7
4,329,225 - DZA65_RS20015 0.79 +0.9
4,329,230 + DZA65_RS20015 0.81 +0.9
4,329,230 + DZA65_RS20015 0.81 -0.5
4,329,230 + DZA65_RS20015 0.81 +0.5
4,329,231 - DZA65_RS20015 0.82 +0.3
4,329,231 - DZA65_RS20015 0.82 +0.4
4,329,231 - DZA65_RS20015 0.82 +0.2
4,329,323 - -0.0
4,329,394 + -2.0
4,329,394 + -0.5
4,329,394 + +0.4
4,329,394 + +0.2
4,329,394 + -0.8
4,329,484 + +0.7
4,329,485 - +0.0
4,329,604 + DZA65_RS20020 0.15 -0.8
4,329,679 + DZA65_RS20020 0.20 -1.3
4,329,679 + DZA65_RS20020 0.20 -2.1
4,329,679 + DZA65_RS20020 0.20 -0.8
4,329,679 + DZA65_RS20020 0.20 +1.1
4,329,679 + DZA65_RS20020 0.20 +0.0
4,329,679 + DZA65_RS20020 0.20 +0.4
4,329,679 + DZA65_RS20020 0.20 +0.4
4,329,679 + DZA65_RS20020 0.20 -0.4
4,329,680 - DZA65_RS20020 0.20 -0.0
4,329,680 - DZA65_RS20020 0.20 -1.5
4,329,680 - DZA65_RS20020 0.20 +0.3
4,329,680 - DZA65_RS20020 0.20 -0.1
4,329,680 - DZA65_RS20020 0.20 +0.5
4,329,680 - DZA65_RS20020 0.20 +0.6
4,329,680 - DZA65_RS20020 0.20 +0.3
4,329,680 - DZA65_RS20020 0.20 +0.1
4,329,680 - DZA65_RS20020 0.20 +0.1
4,330,129 + DZA65_RS20020 0.48 +0.3
4,330,129 + DZA65_RS20020 0.48 +1.1
4,330,129 + DZA65_RS20020 0.48 +0.8
4,330,130 - DZA65_RS20020 0.48 -0.3
4,330,130 - DZA65_RS20020 0.48 -1.2
4,330,130 - DZA65_RS20020 0.48 +1.5
4,330,130 - DZA65_RS20020 0.48 -0.4
4,330,130 - DZA65_RS20020 0.48 +0.2
4,330,130 - DZA65_RS20020 0.48 -0.3
4,330,133 + DZA65_RS20020 0.49 -0.0
4,330,133 + DZA65_RS20020 0.49 +0.7
4,330,133 + DZA65_RS20020 0.49 -2.0
4,330,133 + DZA65_RS20020 0.49 +0.6
4,330,133 + DZA65_RS20020 0.49 -0.7
4,330,133 + -0.1
4,330,133 + DZA65_RS20020 0.49 -0.2
4,330,133 + DZA65_RS20020 0.49 -1.5
4,330,133 + DZA65_RS20020 0.49 -0.2
4,330,133 + DZA65_RS20020 0.49 +0.1
4,330,133 + DZA65_RS20020 0.49 -0.1
4,330,133 + DZA65_RS20020 0.49 +0.5
4,330,134 - DZA65_RS20020 0.49 +0.7
4,330,134 - DZA65_RS20020 0.49 -0.5
4,330,134 - DZA65_RS20020 0.49 +0.5
4,330,134 - DZA65_RS20020 0.49 -2.1
4,330,134 - DZA65_RS20020 0.49 +0.2
4,330,134 - DZA65_RS20020 0.49 -1.0
4,330,134 - DZA65_RS20020 0.49 +0.3
4,330,134 - DZA65_RS20020 0.49 -1.5
4,330,134 - -0.5
4,330,134 - DZA65_RS20020 0.49 -0.2
4,330,139 - DZA65_RS20020 0.49 -0.9
4,330,234 + DZA65_RS20020 0.55 -0.9
4,330,234 + DZA65_RS20020 0.55 +0.2
4,330,246 + DZA65_RS20020 0.56 -1.1
4,330,246 + DZA65_RS20020 0.56 +0.5
4,330,247 - DZA65_RS20020 0.56 +0.1
4,330,247 - DZA65_RS20020 0.56 +0.1
4,330,247 - DZA65_RS20020 0.56 +0.5
4,330,247 - DZA65_RS20020 0.56 -1.0

Or see this region's nucleotide sequence