Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS19960 and DZA65_RS19965 are separated by 11 nucleotides DZA65_RS19965 and DZA65_RS19970 are separated by 31 nucleotides
DZA65_RS19960: DZA65_RS19960 - homocitrate synthase, at 4,317,884 to 4,319,032
_RS19960
DZA65_RS19965: DZA65_RS19965 - cysteine desulfurase NifS, at 4,319,044 to 4,320,306
_RS19965
DZA65_RS19970: DZA65_RS19970 - Fe-S cluster assembly protein NifU, at 4,320,338 to 4,321,183
_RS19970
Position (kb) 4319
4320
4321 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4318.137 kb on + strand, within DZA65_RS19960 at 4318.137 kb on + strand, within DZA65_RS19960 at 4318.137 kb on + strand, within DZA65_RS19960 at 4318.137 kb on + strand, within DZA65_RS19960 at 4318.138 kb on - strand, within DZA65_RS19960 at 4318.220 kb on + strand, within DZA65_RS19960 at 4318.220 kb on + strand, within DZA65_RS19960 at 4318.220 kb on + strand, within DZA65_RS19960 at 4318.220 kb on + strand, within DZA65_RS19960 at 4318.220 kb on + strand, within DZA65_RS19960 at 4318.220 kb on + strand, within DZA65_RS19960 at 4318.220 kb on + strand, within DZA65_RS19960 at 4318.221 kb on - strand, within DZA65_RS19960 at 4318.221 kb on - strand, within DZA65_RS19960 at 4318.221 kb on - strand, within DZA65_RS19960 at 4318.221 kb on - strand, within DZA65_RS19960 at 4318.221 kb on - strand, within DZA65_RS19960 at 4318.221 kb on - strand, within DZA65_RS19960 at 4318.221 kb on - strand, within DZA65_RS19960 at 4318.221 kb on - strand, within DZA65_RS19960 at 4318.221 kb on - strand, within DZA65_RS19960 at 4318.221 kb on - strand, within DZA65_RS19960 at 4318.221 kb on - strand, within DZA65_RS19960 at 4318.537 kb on + strand, within DZA65_RS19960 at 4318.537 kb on + strand, within DZA65_RS19960 at 4318.756 kb on + strand, within DZA65_RS19960 at 4319.051 kb on + strand at 4319.051 kb on + strand at 4319.051 kb on + strand at 4319.051 kb on + strand at 4319.051 kb on + strand at 4319.051 kb on + strand at 4319.052 kb on - strand at 4319.052 kb on - strand at 4319.052 kb on - strand at 4319.052 kb on - strand at 4319.106 kb on - strand at 4319.123 kb on - strand at 4319.159 kb on + strand at 4319.160 kb on - strand at 4319.160 kb on - strand at 4319.160 kb on - strand at 4319.182 kb on - strand, within DZA65_RS19965 at 4319.184 kb on - strand, within DZA65_RS19965 at 4319.184 kb on - strand, within DZA65_RS19965 at 4319.225 kb on + strand, within DZA65_RS19965 at 4319.225 kb on + strand, within DZA65_RS19965 at 4319.225 kb on + strand, within DZA65_RS19965 at 4319.225 kb on + strand, within DZA65_RS19965 at 4319.225 kb on + strand, within DZA65_RS19965 at 4319.361 kb on + strand, within DZA65_RS19965 at 4319.362 kb on - strand, within DZA65_RS19965 at 4319.362 kb on - strand, within DZA65_RS19965 at 4319.370 kb on + strand, within DZA65_RS19965 at 4319.370 kb on + strand, within DZA65_RS19965 at 4319.371 kb on - strand, within DZA65_RS19965 at 4319.488 kb on + strand, within DZA65_RS19965 at 4319.488 kb on + strand, within DZA65_RS19965 at 4319.488 kb on + strand, within DZA65_RS19965 at 4319.488 kb on + strand, within DZA65_RS19965 at 4319.489 kb on - strand, within DZA65_RS19965 at 4319.489 kb on - strand at 4319.535 kb on + strand, within DZA65_RS19965 at 4319.615 kb on + strand, within DZA65_RS19965 at 4319.615 kb on + strand, within DZA65_RS19965 at 4319.615 kb on + strand, within DZA65_RS19965 at 4319.615 kb on + strand, within DZA65_RS19965 at 4319.615 kb on + strand, within DZA65_RS19965 at 4319.615 kb on + strand, within DZA65_RS19965 at 4319.616 kb on - strand, within DZA65_RS19965 at 4319.616 kb on - strand, within DZA65_RS19965 at 4319.616 kb on - strand, within DZA65_RS19965 at 4319.740 kb on + strand, within DZA65_RS19965 at 4319.740 kb on + strand at 4319.740 kb on + strand, within DZA65_RS19965 at 4319.740 kb on + strand, within DZA65_RS19965 at 4319.740 kb on + strand, within DZA65_RS19965 at 4319.740 kb on + strand, within DZA65_RS19965 at 4319.740 kb on + strand, within DZA65_RS19965 at 4319.740 kb on + strand, within DZA65_RS19965 at 4319.740 kb on + strand, within DZA65_RS19965 at 4319.740 kb on + strand, within DZA65_RS19965 at 4319.741 kb on - strand, within DZA65_RS19965 at 4319.741 kb on - strand, within DZA65_RS19965 at 4319.741 kb on - strand, within DZA65_RS19965 at 4319.741 kb on - strand, within DZA65_RS19965 at 4319.741 kb on - strand, within DZA65_RS19965 at 4319.741 kb on - strand, within DZA65_RS19965 at 4319.741 kb on - strand, within DZA65_RS19965 at 4319.741 kb on - strand, within DZA65_RS19965 at 4319.741 kb on - strand, within DZA65_RS19965 at 4319.855 kb on + strand, within DZA65_RS19965 at 4319.856 kb on - strand, within DZA65_RS19965 at 4319.907 kb on + strand, within DZA65_RS19965 at 4319.907 kb on + strand, within DZA65_RS19965 at 4319.907 kb on + strand, within DZA65_RS19965 at 4319.907 kb on + strand, within DZA65_RS19965 at 4319.908 kb on - strand, within DZA65_RS19965 at 4319.909 kb on + strand, within DZA65_RS19965 at 4319.909 kb on + strand, within DZA65_RS19965 at 4319.909 kb on + strand, within DZA65_RS19965 at 4319.910 kb on - strand, within DZA65_RS19965 at 4319.910 kb on - strand, within DZA65_RS19965 at 4319.910 kb on - strand, within DZA65_RS19965 at 4320.048 kb on + strand, within DZA65_RS19965 at 4320.049 kb on - strand, within DZA65_RS19965 at 4320.068 kb on + strand, within DZA65_RS19965 at 4320.069 kb on - strand, within DZA65_RS19965 at 4320.294 kb on - strand at 4320.335 kb on + strand at 4320.336 kb on - strand at 4320.336 kb on - strand at 4320.339 kb on + strand at 4320.339 kb on + strand at 4320.339 kb on + strand at 4320.339 kb on + strand at 4320.339 kb on + strand at 4320.340 kb on - strand at 4320.340 kb on - strand at 4320.358 kb on + strand at 4320.358 kb on + strand at 4320.358 kb on + strand at 4320.358 kb on + strand at 4320.358 kb on + strand at 4320.358 kb on + strand at 4320.358 kb on + strand at 4320.359 kb on - strand at 4320.359 kb on - strand at 4320.359 kb on - strand at 4320.359 kb on - strand at 4320.359 kb on - strand at 4320.359 kb on - strand at 4320.359 kb on - strand at 4320.359 kb on - strand at 4320.360 kb on + strand at 4320.360 kb on + strand at 4320.360 kb on + strand at 4320.360 kb on + strand at 4320.360 kb on + strand at 4320.360 kb on + strand at 4320.360 kb on + strand at 4320.360 kb on + strand at 4320.360 kb on + strand at 4320.360 kb on + strand at 4320.360 kb on + strand at 4320.360 kb on + strand at 4320.360 kb on + strand at 4320.360 kb on + strand at 4320.361 kb on - strand at 4320.361 kb on - strand at 4320.361 kb on - strand at 4320.361 kb on - strand at 4320.361 kb on - strand at 4320.361 kb on - strand at 4320.361 kb on - strand at 4320.361 kb on - strand at 4320.361 kb on - strand at 4320.361 kb on - strand at 4320.361 kb on - strand at 4320.487 kb on + strand, within DZA65_RS19970 at 4320.487 kb on + strand, within DZA65_RS19970 at 4320.487 kb on + strand, within DZA65_RS19970 at 4320.487 kb on + strand, within DZA65_RS19970 at 4320.488 kb on - strand, within DZA65_RS19970 at 4320.488 kb on - strand, within DZA65_RS19970 at 4320.690 kb on + strand, within DZA65_RS19970 at 4320.690 kb on + strand, within DZA65_RS19970 at 4320.691 kb on - strand, within DZA65_RS19970 at 4320.772 kb on + strand, within DZA65_RS19970 at 4320.772 kb on + strand, within DZA65_RS19970 at 4320.773 kb on - strand, within DZA65_RS19970 at 4320.773 kb on - strand, within DZA65_RS19970 at 4320.773 kb on - strand, within DZA65_RS19970 at 4320.773 kb on - strand, within DZA65_RS19970 at 4320.822 kb on + strand, within DZA65_RS19970 at 4320.822 kb on + strand, within DZA65_RS19970 at 4320.822 kb on + strand, within DZA65_RS19970 at 4320.822 kb on + strand, within DZA65_RS19970 at 4320.823 kb on - strand, within DZA65_RS19970 at 4321.145 kb on - strand at 4321.173 kb on + strand at 4321.173 kb on + strand at 4321.173 kb on + strand at 4321.173 kb on + strand at 4321.173 kb on + strand at 4321.174 kb on - strand at 4321.174 kb on - strand at 4321.174 kb on - strand at 4321.174 kb on - strand at 4321.174 kb on - strand at 4321.198 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 4,318,137 + DZA65_RS19960 0.22 +0.3 4,318,137 + DZA65_RS19960 0.22 -1.0 4,318,137 + DZA65_RS19960 0.22 +0.5 4,318,137 + DZA65_RS19960 0.22 -1.3 4,318,138 - DZA65_RS19960 0.22 -0.7 4,318,220 + DZA65_RS19960 0.29 -0.5 4,318,220 + DZA65_RS19960 0.29 -2.1 4,318,220 + DZA65_RS19960 0.29 -0.7 4,318,220 + DZA65_RS19960 0.29 -0.8 4,318,220 + DZA65_RS19960 0.29 +0.5 4,318,220 + DZA65_RS19960 0.29 -0.4 4,318,220 + DZA65_RS19960 0.29 +1.5 4,318,221 - DZA65_RS19960 0.29 -0.8 4,318,221 - DZA65_RS19960 0.29 +0.5 4,318,221 - DZA65_RS19960 0.29 -0.4 4,318,221 - DZA65_RS19960 0.29 -2.0 4,318,221 - DZA65_RS19960 0.29 +0.9 4,318,221 - DZA65_RS19960 0.29 +0.5 4,318,221 - DZA65_RS19960 0.29 +0.5 4,318,221 - DZA65_RS19960 0.29 +0.3 4,318,221 - DZA65_RS19960 0.29 -0.7 4,318,221 - DZA65_RS19960 0.29 +1.1 4,318,221 - DZA65_RS19960 0.29 -1.2 4,318,537 + DZA65_RS19960 0.57 -0.3 4,318,537 + DZA65_RS19960 0.57 +0.1 4,318,756 + DZA65_RS19960 0.76 -1.7 4,319,051 + -0.7 4,319,051 + +0.8 4,319,051 + +2.2 4,319,051 + -1.2 4,319,051 + -0.8 4,319,051 + -0.5 4,319,052 - -0.3 4,319,052 - +1.5 4,319,052 - -1.8 4,319,052 - +0.8 4,319,106 - +0.7 4,319,123 - -0.4 4,319,159 + -0.5 4,319,160 - -0.2 4,319,160 - +0.1 4,319,160 - +0.3 4,319,182 - DZA65_RS19965 0.11 -0.5 4,319,184 - DZA65_RS19965 0.11 +0.1 4,319,184 - DZA65_RS19965 0.11 -0.2 4,319,225 + DZA65_RS19965 0.14 +1.0 4,319,225 + DZA65_RS19965 0.14 +0.2 4,319,225 + DZA65_RS19965 0.14 -2.4 4,319,225 + DZA65_RS19965 0.14 -0.2 4,319,225 + DZA65_RS19965 0.14 -0.3 4,319,361 + DZA65_RS19965 0.25 -0.2 4,319,362 - DZA65_RS19965 0.25 -0.7 4,319,362 - DZA65_RS19965 0.25 -1.0 4,319,370 + DZA65_RS19965 0.26 +0.2 4,319,370 + DZA65_RS19965 0.26 -1.4 4,319,371 - DZA65_RS19965 0.26 +0.4 4,319,488 + DZA65_RS19965 0.35 -0.3 4,319,488 + DZA65_RS19965 0.35 -0.7 4,319,488 + DZA65_RS19965 0.35 -0.1 4,319,488 + DZA65_RS19965 0.35 -0.1 4,319,489 - DZA65_RS19965 0.35 -0.9 4,319,489 - -0.5 4,319,535 + DZA65_RS19965 0.39 +0.6 4,319,615 + DZA65_RS19965 0.45 -0.6 4,319,615 + DZA65_RS19965 0.45 -0.1 4,319,615 + DZA65_RS19965 0.45 -0.5 4,319,615 + DZA65_RS19965 0.45 -0.7 4,319,615 + DZA65_RS19965 0.45 +0.4 4,319,615 + DZA65_RS19965 0.45 -0.1 4,319,616 - DZA65_RS19965 0.45 +0.7 4,319,616 - DZA65_RS19965 0.45 -1.8 4,319,616 - DZA65_RS19965 0.45 -0.7 4,319,740 + DZA65_RS19965 0.55 +0.5 4,319,740 + +0.9 4,319,740 + DZA65_RS19965 0.55 +0.3 4,319,740 + DZA65_RS19965 0.55 -0.1 4,319,740 + DZA65_RS19965 0.55 -0.3 4,319,740 + DZA65_RS19965 0.55 +0.3 4,319,740 + DZA65_RS19965 0.55 +1.7 4,319,740 + DZA65_RS19965 0.55 -0.5 4,319,740 + DZA65_RS19965 0.55 -0.5 4,319,740 + DZA65_RS19965 0.55 -0.7 4,319,741 - DZA65_RS19965 0.55 -0.7 4,319,741 - DZA65_RS19965 0.55 -2.1 4,319,741 - DZA65_RS19965 0.55 -0.5 4,319,741 - DZA65_RS19965 0.55 -0.2 4,319,741 - DZA65_RS19965 0.55 -0.3 4,319,741 - DZA65_RS19965 0.55 -0.9 4,319,741 - DZA65_RS19965 0.55 +0.2 4,319,741 - DZA65_RS19965 0.55 -1.5 4,319,741 - DZA65_RS19965 0.55 -2.1 4,319,855 + DZA65_RS19965 0.64 +1.1 4,319,856 - DZA65_RS19965 0.64 -2.9 4,319,907 + DZA65_RS19965 0.68 +0.5 4,319,907 + DZA65_RS19965 0.68 +0.2 4,319,907 + DZA65_RS19965 0.68 +0.1 4,319,907 + DZA65_RS19965 0.68 -1.6 4,319,908 - DZA65_RS19965 0.68 -1.1 4,319,909 + DZA65_RS19965 0.68 +0.3 4,319,909 + DZA65_RS19965 0.68 +0.5 4,319,909 + DZA65_RS19965 0.68 -0.5 4,319,910 - DZA65_RS19965 0.69 +0.1 4,319,910 - DZA65_RS19965 0.69 +0.7 4,319,910 - DZA65_RS19965 0.69 -0.0 4,320,048 + DZA65_RS19965 0.79 -1.3 4,320,049 - DZA65_RS19965 0.80 -0.2 4,320,068 + DZA65_RS19965 0.81 -0.4 4,320,069 - DZA65_RS19965 0.81 +0.1 4,320,294 - -0.2 4,320,335 + -1.1 4,320,336 - -1.2 4,320,336 - +0.1 4,320,339 + +1.2 4,320,339 + -0.8 4,320,339 + -0.5 4,320,339 + -0.5 4,320,339 + -0.8 4,320,340 - +0.2 4,320,340 - -0.4 4,320,358 + -0.1 4,320,358 + +1.5 4,320,358 + +1.6 4,320,358 + -0.2 4,320,358 + -0.5 4,320,358 + -2.2 4,320,358 + -1.7 4,320,359 - +0.1 4,320,359 - +0.1 4,320,359 - -2.1 4,320,359 - -1.3 4,320,359 - -0.5 4,320,359 - -0.1 4,320,359 - +0.1 4,320,359 - +0.9 4,320,360 + +0.8 4,320,360 + +0.9 4,320,360 + -0.3 4,320,360 + +0.4 4,320,360 + -1.0 4,320,360 + -1.5 4,320,360 + -1.7 4,320,360 + -0.5 4,320,360 + -1.2 4,320,360 + -0.1 4,320,360 + +0.3 4,320,360 + +0.7 4,320,360 + -0.9 4,320,360 + +0.1 4,320,361 - -0.6 4,320,361 - +0.1 4,320,361 - -0.7 4,320,361 - +0.2 4,320,361 - +0.7 4,320,361 - +1.0 4,320,361 - -0.3 4,320,361 - +0.0 4,320,361 - -0.3 4,320,361 - -0.8 4,320,361 - -0.8 4,320,487 + DZA65_RS19970 0.18 +0.3 4,320,487 + DZA65_RS19970 0.18 +0.2 4,320,487 + DZA65_RS19970 0.18 +1.1 4,320,487 + DZA65_RS19970 0.18 +1.2 4,320,488 - DZA65_RS19970 0.18 -0.7 4,320,488 - DZA65_RS19970 0.18 +0.9 4,320,690 + DZA65_RS19970 0.42 -0.6 4,320,690 + DZA65_RS19970 0.42 -0.9 4,320,691 - DZA65_RS19970 0.42 +0.6 4,320,772 + DZA65_RS19970 0.51 -0.1 4,320,772 + DZA65_RS19970 0.51 -2.3 4,320,773 - DZA65_RS19970 0.51 -0.3 4,320,773 - DZA65_RS19970 0.51 +1.2 4,320,773 - DZA65_RS19970 0.51 -2.2 4,320,773 - DZA65_RS19970 0.51 +0.3 4,320,822 + DZA65_RS19970 0.57 -0.8 4,320,822 + DZA65_RS19970 0.57 -1.5 4,320,822 + DZA65_RS19970 0.57 +1.5 4,320,822 + DZA65_RS19970 0.57 +0.1 4,320,823 - DZA65_RS19970 0.57 +0.5 4,321,145 - -0.3 4,321,173 + -0.7 4,321,173 + -0.6 4,321,173 + -0.7 4,321,173 + -1.5 4,321,173 + -0.5 4,321,174 - -1.3 4,321,174 - +0.0 4,321,174 - +1.5 4,321,174 - -1.2 4,321,174 - -0.1 4,321,198 - -0.3
Or see this region's nucleotide sequence