Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS19075

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS19065 and DZA65_RS19070 are separated by 31 nucleotidesDZA65_RS19070 and DZA65_RS19075 are separated by 84 nucleotidesDZA65_RS19075 and DZA65_RS19080 are separated by 69 nucleotides DZA65_RS19065: DZA65_RS19065 - cell division protein ZapD, at 4,121,737 to 4,122,486 _RS19065 DZA65_RS19070: DZA65_RS19070 - DNA gyrase inhibitor YacG, at 4,122,518 to 4,122,715 _RS19070 DZA65_RS19075: DZA65_RS19075 - 8-oxo-dGTP diphosphatase MutT, at 4,122,800 to 4,123,201 _RS19075 DZA65_RS19080: DZA65_RS19080 - preprotein translocase subunit SecA, at 4,123,271 to 4,125,964 _RS19080 Position (kb) 4122 4123 4124Strain fitness (log2 ratio) -2 -1 0 1 2at 4121.830 kb on + strand, within DZA65_RS19065at 4121.830 kb on + strand, within DZA65_RS19065at 4121.853 kb on + strand, within DZA65_RS19065at 4121.901 kb on + strand, within DZA65_RS19065at 4122.009 kb on + strand, within DZA65_RS19065at 4122.009 kb on + strand, within DZA65_RS19065at 4122.010 kb on - strand, within DZA65_RS19065at 4122.010 kb on - strand, within DZA65_RS19065at 4122.010 kb on - strand, within DZA65_RS19065at 4122.010 kb on - strand, within DZA65_RS19065at 4122.012 kb on + strand, within DZA65_RS19065at 4122.012 kb on + strand, within DZA65_RS19065at 4122.012 kb on + strand, within DZA65_RS19065at 4122.012 kb on + strand, within DZA65_RS19065at 4122.012 kb on + strand, within DZA65_RS19065at 4122.012 kb on + strand, within DZA65_RS19065at 4122.012 kb on + strand, within DZA65_RS19065at 4122.013 kb on - strand, within DZA65_RS19065at 4122.013 kb on - strand, within DZA65_RS19065at 4122.013 kb on - strandat 4122.013 kb on - strand, within DZA65_RS19065at 4122.033 kb on + strand, within DZA65_RS19065at 4122.033 kb on + strand, within DZA65_RS19065at 4122.081 kb on - strand, within DZA65_RS19065at 4122.095 kb on + strand, within DZA65_RS19065at 4122.095 kb on + strand, within DZA65_RS19065at 4122.095 kb on + strand, within DZA65_RS19065at 4122.095 kb on + strand, within DZA65_RS19065at 4122.095 kb on + strand, within DZA65_RS19065at 4122.095 kb on + strand, within DZA65_RS19065at 4122.096 kb on - strand, within DZA65_RS19065at 4122.102 kb on + strand, within DZA65_RS19065at 4122.102 kb on + strand, within DZA65_RS19065at 4122.102 kb on + strand, within DZA65_RS19065at 4122.102 kb on + strand, within DZA65_RS19065at 4122.107 kb on + strand, within DZA65_RS19065at 4122.107 kb on + strand, within DZA65_RS19065at 4122.107 kb on + strand, within DZA65_RS19065at 4122.107 kb on + strand, within DZA65_RS19065at 4122.107 kb on + strand, within DZA65_RS19065at 4122.107 kb on + strand, within DZA65_RS19065at 4122.107 kb on + strand, within DZA65_RS19065at 4122.107 kb on + strand, within DZA65_RS19065at 4122.107 kb on + strand, within DZA65_RS19065at 4122.107 kb on + strand, within DZA65_RS19065at 4122.107 kb on + strand, within DZA65_RS19065at 4122.107 kb on + strand, within DZA65_RS19065at 4122.108 kb on - strand, within DZA65_RS19065at 4122.108 kb on - strand, within DZA65_RS19065at 4122.108 kb on - strand, within DZA65_RS19065at 4122.108 kb on - strand, within DZA65_RS19065at 4122.108 kb on - strand, within DZA65_RS19065at 4122.108 kb on - strand, within DZA65_RS19065at 4122.108 kb on - strand, within DZA65_RS19065at 4122.165 kb on + strand, within DZA65_RS19065at 4122.165 kb on + strand, within DZA65_RS19065at 4122.165 kb on + strand, within DZA65_RS19065at 4122.166 kb on - strand, within DZA65_RS19065at 4122.173 kb on + strand, within DZA65_RS19065at 4122.173 kb on + strand, within DZA65_RS19065at 4122.173 kb on + strand, within DZA65_RS19065at 4122.173 kb on + strand, within DZA65_RS19065at 4122.174 kb on - strand, within DZA65_RS19065at 4122.174 kb on - strand, within DZA65_RS19065at 4122.174 kb on - strand, within DZA65_RS19065at 4122.257 kb on + strand, within DZA65_RS19065at 4122.257 kb on + strand, within DZA65_RS19065at 4122.258 kb on - strand, within DZA65_RS19065at 4122.258 kb on - strand, within DZA65_RS19065at 4122.258 kb on - strand, within DZA65_RS19065at 4122.258 kb on - strand, within DZA65_RS19065at 4122.258 kb on - strand, within DZA65_RS19065at 4122.316 kb on + strand, within DZA65_RS19065at 4122.316 kb on + strand, within DZA65_RS19065at 4122.317 kb on - strand, within DZA65_RS19065at 4122.317 kb on - strand, within DZA65_RS19065at 4122.324 kb on + strand, within DZA65_RS19065at 4122.325 kb on - strand, within DZA65_RS19065at 4122.325 kb on - strand, within DZA65_RS19065at 4122.347 kb on + strand, within DZA65_RS19065at 4122.347 kb on + strand, within DZA65_RS19065at 4122.347 kb on + strand, within DZA65_RS19065at 4122.347 kb on + strand, within DZA65_RS19065at 4122.347 kb on + strand, within DZA65_RS19065at 4122.347 kb on + strand, within DZA65_RS19065at 4122.347 kb on + strand, within DZA65_RS19065at 4122.347 kb on + strand, within DZA65_RS19065at 4122.348 kb on - strand, within DZA65_RS19065at 4122.348 kb on - strand, within DZA65_RS19065at 4122.348 kb on - strand, within DZA65_RS19065at 4122.348 kb on - strand, within DZA65_RS19065at 4122.348 kb on - strand, within DZA65_RS19065at 4122.379 kb on + strand, within DZA65_RS19065at 4122.390 kb on - strand, within DZA65_RS19065at 4122.399 kb on + strand, within DZA65_RS19065at 4122.399 kb on + strand, within DZA65_RS19065at 4122.399 kb on + strand, within DZA65_RS19065at 4122.399 kb on + strand, within DZA65_RS19065at 4122.400 kb on - strand, within DZA65_RS19065at 4122.400 kb on - strand, within DZA65_RS19065at 4122.484 kb on + strandat 4122.514 kb on + strandat 4122.514 kb on + strandat 4122.514 kb on + strandat 4122.514 kb on + strandat 4122.514 kb on + strandat 4122.515 kb on - strandat 4122.515 kb on - strandat 4122.515 kb on - strandat 4122.515 kb on - strandat 4122.515 kb on - strandat 4122.515 kb on - strandat 4122.540 kb on + strand, within DZA65_RS19070at 4122.541 kb on - strand, within DZA65_RS19070at 4122.541 kb on - strand, within DZA65_RS19070at 4122.550 kb on + strand, within DZA65_RS19070at 4122.583 kb on + strand, within DZA65_RS19070at 4122.583 kb on + strand, within DZA65_RS19070at 4122.676 kb on + strand, within DZA65_RS19070at 4122.676 kb on + strand, within DZA65_RS19070at 4122.676 kb on + strand, within DZA65_RS19070at 4122.676 kb on + strand, within DZA65_RS19070at 4122.676 kb on + strand, within DZA65_RS19070at 4122.676 kb on + strand, within DZA65_RS19070at 4122.676 kb on + strand, within DZA65_RS19070at 4122.677 kb on - strand, within DZA65_RS19070at 4122.677 kb on - strand, within DZA65_RS19070at 4122.713 kb on + strandat 4122.714 kb on - strandat 4122.731 kb on + strandat 4122.732 kb on - strandat 4122.749 kb on + strandat 4122.766 kb on + strandat 4122.767 kb on - strandat 4122.767 kb on - strandat 4122.772 kb on + strandat 4122.773 kb on - strandat 4122.773 kb on - strandat 4122.773 kb on - strandat 4122.773 kb on - strandat 4122.773 kb on - strandat 4122.784 kb on + strandat 4122.784 kb on + strandat 4122.785 kb on - strandat 4122.785 kb on - strandat 4122.797 kb on + strandat 4122.797 kb on + strandat 4122.797 kb on + strandat 4122.798 kb on - strandat 4122.798 kb on - strandat 4122.798 kb on - strandat 4122.956 kb on - strand, within DZA65_RS19075at 4122.956 kb on - strand, within DZA65_RS19075at 4122.956 kb on - strand, within DZA65_RS19075at 4122.956 kb on - strand, within DZA65_RS19075at 4123.111 kb on + strand, within DZA65_RS19075at 4123.111 kb on + strand, within DZA65_RS19075at 4123.111 kb on + strand, within DZA65_RS19075at 4123.111 kb on + strand, within DZA65_RS19075at 4123.112 kb on - strandat 4123.112 kb on - strand, within DZA65_RS19075at 4123.112 kb on - strand, within DZA65_RS19075at 4123.168 kb on + strandat 4123.184 kb on + strandat 4123.202 kb on + strandat 4123.243 kb on + strandat 4123.243 kb on + strandat 4123.251 kb on - strandat 4123.258 kb on + strandat 4123.273 kb on - strandat 4123.273 kb on - strandat 4123.484 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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4,121,830 + DZA65_RS19065 0.12 +1.0
4,121,830 + DZA65_RS19065 0.12 -0.7
4,121,853 + DZA65_RS19065 0.15 +0.0
4,121,901 + DZA65_RS19065 0.22 -0.4
4,122,009 + DZA65_RS19065 0.36 -0.8
4,122,009 + DZA65_RS19065 0.36 +1.2
4,122,010 - DZA65_RS19065 0.36 +0.7
4,122,010 - DZA65_RS19065 0.36 -0.5
4,122,010 - DZA65_RS19065 0.36 -0.8
4,122,010 - DZA65_RS19065 0.36 +1.9
4,122,012 + DZA65_RS19065 0.37 +1.0
4,122,012 + DZA65_RS19065 0.37 +0.8
4,122,012 + DZA65_RS19065 0.37 +0.4
4,122,012 + DZA65_RS19065 0.37 +0.3
4,122,012 + DZA65_RS19065 0.37 +1.0
4,122,012 + DZA65_RS19065 0.37 -0.2
4,122,012 + DZA65_RS19065 0.37 -0.2
4,122,013 - DZA65_RS19065 0.37 +0.1
4,122,013 - DZA65_RS19065 0.37 -0.3
4,122,013 - -0.2
4,122,013 - DZA65_RS19065 0.37 +0.2
4,122,033 + DZA65_RS19065 0.39 -0.9
4,122,033 + DZA65_RS19065 0.39 +0.2
4,122,081 - DZA65_RS19065 0.46 -0.8
4,122,095 + DZA65_RS19065 0.48 -0.8
4,122,095 + DZA65_RS19065 0.48 -1.2
4,122,095 + DZA65_RS19065 0.48 +0.6
4,122,095 + DZA65_RS19065 0.48 -1.8
4,122,095 + DZA65_RS19065 0.48 +0.2
4,122,095 + DZA65_RS19065 0.48 -0.7
4,122,096 - DZA65_RS19065 0.48 -1.2
4,122,102 + DZA65_RS19065 0.49 -0.7
4,122,102 + DZA65_RS19065 0.49 -0.6
4,122,102 + DZA65_RS19065 0.49 -0.5
4,122,102 + DZA65_RS19065 0.49 +0.3
4,122,107 + DZA65_RS19065 0.49 -0.6
4,122,107 + DZA65_RS19065 0.49 +1.4
4,122,107 + DZA65_RS19065 0.49 -0.7
4,122,107 + DZA65_RS19065 0.49 +0.9
4,122,107 + DZA65_RS19065 0.49 +1.1
4,122,107 + DZA65_RS19065 0.49 -0.1
4,122,107 + DZA65_RS19065 0.49 -0.9
4,122,107 + DZA65_RS19065 0.49 -0.3
4,122,107 + DZA65_RS19065 0.49 -0.7
4,122,107 + DZA65_RS19065 0.49 -1.8
4,122,107 + DZA65_RS19065 0.49 +0.1
4,122,107 + DZA65_RS19065 0.49 -1.1
4,122,108 - DZA65_RS19065 0.49 -2.2
4,122,108 - DZA65_RS19065 0.49 +0.2
4,122,108 - DZA65_RS19065 0.49 -2.2
4,122,108 - DZA65_RS19065 0.49 -1.1
4,122,108 - DZA65_RS19065 0.49 +0.4
4,122,108 - DZA65_RS19065 0.49 +0.4
4,122,108 - DZA65_RS19065 0.49 +0.8
4,122,165 + DZA65_RS19065 0.57 -0.8
4,122,165 + DZA65_RS19065 0.57 -0.0
4,122,165 + DZA65_RS19065 0.57 +0.5
4,122,166 - DZA65_RS19065 0.57 -0.7
4,122,173 + DZA65_RS19065 0.58 +0.2
4,122,173 + DZA65_RS19065 0.58 +0.1
4,122,173 + DZA65_RS19065 0.58 -0.2
4,122,173 + DZA65_RS19065 0.58 +1.7
4,122,174 - DZA65_RS19065 0.58 -0.9
4,122,174 - DZA65_RS19065 0.58 -0.9
4,122,174 - DZA65_RS19065 0.58 +0.2
4,122,257 + DZA65_RS19065 0.69 +0.8
4,122,257 + DZA65_RS19065 0.69 +1.0
4,122,258 - DZA65_RS19065 0.69 +0.8
4,122,258 - DZA65_RS19065 0.69 -1.1
4,122,258 - DZA65_RS19065 0.69 +0.2
4,122,258 - DZA65_RS19065 0.69 -0.2
4,122,258 - DZA65_RS19065 0.69 -0.2
4,122,316 + DZA65_RS19065 0.77 -1.3
4,122,316 + DZA65_RS19065 0.77 +0.1
4,122,317 - DZA65_RS19065 0.77 +1.2
4,122,317 - DZA65_RS19065 0.77 -0.8
4,122,324 + DZA65_RS19065 0.78 -1.0
4,122,325 - DZA65_RS19065 0.78 -0.9
4,122,325 - DZA65_RS19065 0.78 +0.3
4,122,347 + DZA65_RS19065 0.81 -0.5
4,122,347 + DZA65_RS19065 0.81 -0.9
4,122,347 + DZA65_RS19065 0.81 +0.6
4,122,347 + DZA65_RS19065 0.81 -0.6
4,122,347 + DZA65_RS19065 0.81 +0.5
4,122,347 + DZA65_RS19065 0.81 +0.8
4,122,347 + DZA65_RS19065 0.81 -1.2
4,122,347 + DZA65_RS19065 0.81 -0.3
4,122,348 - DZA65_RS19065 0.81 -0.1
4,122,348 - DZA65_RS19065 0.81 +0.7
4,122,348 - DZA65_RS19065 0.81 +1.2
4,122,348 - DZA65_RS19065 0.81 -0.3
4,122,348 - DZA65_RS19065 0.81 +0.1
4,122,379 + DZA65_RS19065 0.86 +0.4
4,122,390 - DZA65_RS19065 0.87 -0.9
4,122,399 + DZA65_RS19065 0.88 +0.1
4,122,399 + DZA65_RS19065 0.88 -1.6
4,122,399 + DZA65_RS19065 0.88 -0.5
4,122,399 + DZA65_RS19065 0.88 -0.1
4,122,400 - DZA65_RS19065 0.88 +0.0
4,122,400 - DZA65_RS19065 0.88 -0.6
4,122,484 + -1.2
4,122,514 + +0.8
4,122,514 + -0.8
4,122,514 + -0.4
4,122,514 + -1.1
4,122,514 + +0.0
4,122,515 - +0.8
4,122,515 - +0.7
4,122,515 - +1.1
4,122,515 - -1.3
4,122,515 - +0.1
4,122,515 - +0.1
4,122,540 + DZA65_RS19070 0.11 -0.6
4,122,541 - DZA65_RS19070 0.12 -1.8
4,122,541 - DZA65_RS19070 0.12 +0.2
4,122,550 + DZA65_RS19070 0.16 -0.6
4,122,583 + DZA65_RS19070 0.33 -0.8
4,122,583 + DZA65_RS19070 0.33 -0.0
4,122,676 + DZA65_RS19070 0.80 -0.2
4,122,676 + DZA65_RS19070 0.80 -0.8
4,122,676 + DZA65_RS19070 0.80 -0.0
4,122,676 + DZA65_RS19070 0.80 -1.2
4,122,676 + DZA65_RS19070 0.80 +0.2
4,122,676 + DZA65_RS19070 0.80 +0.7
4,122,676 + DZA65_RS19070 0.80 -0.0
4,122,677 - DZA65_RS19070 0.80 -0.9
4,122,677 - DZA65_RS19070 0.80 -0.2
4,122,713 + +0.2
4,122,714 - -0.2
4,122,731 + +0.2
4,122,732 - -0.2
4,122,749 + -0.3
4,122,766 + -0.5
4,122,767 - -0.5
4,122,767 - +0.2
4,122,772 + +0.3
4,122,773 - -0.6
4,122,773 - -1.8
4,122,773 - -1.9
4,122,773 - -0.6
4,122,773 - +0.1
4,122,784 + +0.1
4,122,784 + -0.5
4,122,785 - +0.5
4,122,785 - -0.6
4,122,797 + -2.6
4,122,797 + -1.0
4,122,797 + -0.6
4,122,798 - -0.8
4,122,798 - +1.4
4,122,798 - +0.3
4,122,956 - DZA65_RS19075 0.39 -0.4
4,122,956 - DZA65_RS19075 0.39 -0.2
4,122,956 - DZA65_RS19075 0.39 +1.0
4,122,956 - DZA65_RS19075 0.39 -0.8
4,123,111 + DZA65_RS19075 0.77 +0.2
4,123,111 + DZA65_RS19075 0.77 +0.8
4,123,111 + DZA65_RS19075 0.77 -0.9
4,123,111 + DZA65_RS19075 0.77 +0.0
4,123,112 - +1.4
4,123,112 - DZA65_RS19075 0.78 -0.3
4,123,112 - DZA65_RS19075 0.78 +0.2
4,123,168 + +0.5
4,123,184 + +0.5
4,123,202 + -0.5
4,123,243 + -0.6
4,123,243 + -0.1
4,123,251 - -0.2
4,123,258 + -1.0
4,123,273 - -0.1
4,123,273 - -0.8
4,123,484 - -1.1

Or see this region's nucleotide sequence