Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS17735

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
3,817,042	+		DZA65_RS17730	0.58	-0.3
3,817,043	-		DZA65_RS17730	0.58	-0.8
3,817,176	+		DZA65_RS17730	0.67	-0.1
3,817,176	+		DZA65_RS17730	0.67	+0.1
3,817,176	+		DZA65_RS17730	0.67	+0.1
3,817,177	-		DZA65_RS17730	0.67	-0.0
3,817,177	-		DZA65_RS17730	0.67	-0.4
3,817,177	-		DZA65_RS17730	0.67	-0.1
3,817,177	-		DZA65_RS17730	0.67	-1.2
3,817,177	-		DZA65_RS17730	0.67	-0.0
3,817,191	+		DZA65_RS17730	0.68	-1.0
3,817,220	+		DZA65_RS17730	0.70	-1.0
3,817,221	-		DZA65_RS17730	0.70	+0.4
3,817,223	+		DZA65_RS17730	0.70	+0.3
3,817,224	-		DZA65_RS17730	0.70	-1.2
3,817,224	-		DZA65_RS17730	0.70	-0.2
3,817,318	+		DZA65_RS17730	0.77	-1.3
3,817,318	+		DZA65_RS17730	0.77	-1.5
3,817,319	-		DZA65_RS17730	0.77	+0.1
3,817,319	-		DZA65_RS17730	0.77	+1.3
3,817,319	-		DZA65_RS17730	0.77	+0.1
3,817,319	-		DZA65_RS17730	0.77	+0.3
3,817,319	-		DZA65_RS17730	0.77	+0.1
3,817,319	-		DZA65_RS17730	0.77	-0.6
3,817,441	+		DZA65_RS17730	0.85	-0.3
3,817,442	-		DZA65_RS17730	0.85	-0.9
3,817,533	+				+1.9
3,817,533	+				-0.7
3,817,534	-				-0.6
3,817,610	-				-0.4
3,817,658	-				+0.4
3,817,741	+				+0.9
3,817,741	+				+0.6
3,817,742	-				+0.3
3,817,860	+		DZA65_RS17735	0.13	+0.3
3,817,860	+		DZA65_RS17735	0.13	-0.7
3,817,861	-		DZA65_RS17735	0.13	-0.9
3,817,922	-		DZA65_RS17735	0.19	-0.9
3,817,985	+		DZA65_RS17735	0.24	-1.0
3,817,985	+		DZA65_RS17735	0.24	+0.7
3,817,985	+		DZA65_RS17735	0.24	-1.6
3,817,985	+		DZA65_RS17735	0.24	-0.1
3,817,985	+		DZA65_RS17735	0.24	-1.2
3,817,985	+		DZA65_RS17735	0.24	-1.0
3,817,985	+		DZA65_RS17735	0.24	-0.9
3,817,986	-		DZA65_RS17735	0.25	+0.2
3,817,986	-		DZA65_RS17735	0.25	-0.0
3,817,986	-		DZA65_RS17735	0.25	+0.2
3,817,986	-		DZA65_RS17735	0.25	+0.3
3,817,986	-		DZA65_RS17735	0.25	-0.2
3,817,986	-		DZA65_RS17735	0.25	+2.3
3,818,028	+		DZA65_RS17735	0.29	-0.5
3,818,028	+		DZA65_RS17735	0.29	-2.0
3,818,064	+		DZA65_RS17735	0.32	+0.1
3,818,064	+		DZA65_RS17735	0.32	-1.3
3,818,064	+		DZA65_RS17735	0.32	-1.3
3,818,065	-		DZA65_RS17735	0.32	-0.1
3,818,065	-				+0.9
3,818,065	-		DZA65_RS17735	0.32	-0.1
3,818,065	-		DZA65_RS17735	0.32	-0.2
3,818,101	-		DZA65_RS17735	0.35	+1.3
3,818,168	+		DZA65_RS17735	0.42	+0.3
3,818,300	+		DZA65_RS17735	0.54	-1.8
3,818,300	+		DZA65_RS17735	0.54	-0.6
3,818,300	+		DZA65_RS17735	0.54	+0.9
3,818,300	+		DZA65_RS17735	0.54	+0.0
3,818,300	+		DZA65_RS17735	0.54	+0.4
3,818,300	+		DZA65_RS17735	0.54	-0.5
3,818,300	+		DZA65_RS17735	0.54	+0.2
3,818,300	+		DZA65_RS17735	0.54	-0.5
3,818,300	+		DZA65_RS17735	0.54	-1.2
3,818,301	-		DZA65_RS17735	0.54	-0.9
3,818,301	-		DZA65_RS17735	0.54	+0.6
3,818,301	-		DZA65_RS17735	0.54	-0.1
3,818,301	-		DZA65_RS17735	0.54	-0.9
3,818,301	-		DZA65_RS17735	0.54	-0.5
3,818,301	-		DZA65_RS17735	0.54	+0.2
3,818,301	-		DZA65_RS17735	0.54	-0.6
3,818,468	+		DZA65_RS17735	0.70	+0.3
3,818,468	+		DZA65_RS17735	0.70	-1.5
3,818,468	+		DZA65_RS17735	0.70	-0.7
3,818,468	+		DZA65_RS17735	0.70	-0.5
3,818,468	+		DZA65_RS17735	0.70	+0.3
3,818,469	-		DZA65_RS17735	0.70	-0.3
3,818,505	+		DZA65_RS17735	0.74	+0.7
3,818,505	+		DZA65_RS17735	0.74	-0.7
3,818,505	+		DZA65_RS17735	0.74	+1.3
3,818,505	+		DZA65_RS17735	0.74	+0.4
3,818,505	+		DZA65_RS17735	0.74	-1.0
3,818,506	-		DZA65_RS17735	0.74	-0.8
3,818,506	-		DZA65_RS17735	0.74	-0.5
3,818,506	-		DZA65_RS17735	0.74	-0.3
3,818,506	-		DZA65_RS17735	0.74	+0.3
3,818,507	+		DZA65_RS17735	0.74	-1.1
3,818,508	-		DZA65_RS17735	0.74	-0.9
3,818,549	+		DZA65_RS17735	0.78	+0.3
3,818,549	+		DZA65_RS17735	0.78	+0.3
3,818,549	+		DZA65_RS17735	0.78	+0.3
3,818,549	+		DZA65_RS17735	0.78	-0.2
3,818,549	+		DZA65_RS17735	0.78	-1.9
3,818,549	+		DZA65_RS17735	0.78	-0.4
3,818,549	+		DZA65_RS17735	0.78	-1.3
3,818,550	-		DZA65_RS17735	0.78	-1.5
3,818,550	-		DZA65_RS17735	0.78	-1.4
3,818,550	-		DZA65_RS17735	0.78	-0.1
3,818,550	-		DZA65_RS17735	0.78	+0.1
3,818,550	-		DZA65_RS17735	0.78	+0.1
3,818,550	-		DZA65_RS17735	0.78	-0.4
3,818,550	-		DZA65_RS17735	0.78	-0.0
3,818,616	+		DZA65_RS17735	0.84	-0.3
3,818,627	-				+2.0
3,818,649	-		DZA65_RS17735	0.87	+0.3
3,818,706	+				+0.3
3,818,707	-				-0.2
3,818,747	+				-0.0
3,818,806	-				-0.1
3,818,825	-				+0.2
3,818,894	+				-0.1
3,818,928	+				-1.0
3,818,929	-				-0.1
3,818,929	-				+0.6
3,818,937	+				+0.0
3,818,937	+				+0.7
3,818,937	+				+0.3
3,818,937	+				-1.3
3,818,938	-				-0.5
3,818,938	-				-1.4
3,818,938	-				-1.7
3,818,945	+				+0.0
3,818,945	+				+1.1
3,818,945	+				+0.3
3,818,945	+				+2.9
3,818,945	+				+0.7
3,818,974	+				+0.5
3,818,993	+				-0.3
3,818,998	+				-0.0
3,818,998	+				-0.4
3,818,998	+				+0.1
3,818,999	-				-0.1
3,818,999	-				+0.0
3,819,057	-				-1.0
3,819,063	+				-1.5
3,819,064	-				-0.1
3,819,064	-				-0.5
3,819,068	+				+0.3
3,819,068	+				-1.4
3,819,068	+				+0.3
3,819,068	+				+1.2
3,819,069	-				+1.6
3,819,098	+				-1.0
3,819,098	+				-0.3
3,819,098	+				-0.5
3,819,098	+				+0.3
3,819,099	-				-1.7
3,819,099	-				+1.6
3,819,099	-				+0.3
3,819,099	-				+0.7
3,819,099	-				-2.8
3,819,099	-				+0.2
3,819,099	-				-0.1
3,819,099	-				+0.4
3,819,099	-				-1.9
3,819,161	+				-1.7
3,819,162	-				-0.0
3,819,162	-				-0.3
3,819,224	+		DZA65_RS17740	0.18	+0.3
3,819,224	+		DZA65_RS17740	0.18	+0.3
3,819,224	+		DZA65_RS17740	0.18	+0.4
3,819,224	+		DZA65_RS17740	0.18	-0.2
3,819,225	-		DZA65_RS17740	0.18	+0.8
3,819,225	-		DZA65_RS17740	0.18	+0.1
3,819,225	-		DZA65_RS17740	0.18	+0.3
3,819,225	-		DZA65_RS17740	0.18	-0.9
3,819,226	+		DZA65_RS17740	0.18	-0.0
3,819,226	+		DZA65_RS17740	0.18	+0.8
3,819,227	-		DZA65_RS17740	0.18	+0.4
3,819,264	-		DZA65_RS17740	0.23	-0.9
3,819,284	+		DZA65_RS17740	0.26	+0.2
3,819,284	+		DZA65_RS17740	0.26	-0.0
3,819,284	+		DZA65_RS17740	0.26	-0.6
3,819,284	+		DZA65_RS17740	0.26	+1.0
3,819,285	-		DZA65_RS17740	0.26	+0.6
3,819,285	-		DZA65_RS17740	0.26	-1.0
3,819,285	-		DZA65_RS17740	0.26	-0.1
3,819,317	+		DZA65_RS17740	0.31	+0.2
3,819,318	-		DZA65_RS17740	0.31	-0.7
3,819,358	+		DZA65_RS17740	0.36	-0.3
3,819,359	-		DZA65_RS17740	0.36	+0.9
3,819,378	-		DZA65_RS17740	0.39	+0.2
3,819,378	-		DZA65_RS17740	0.39	-0.3
3,819,416	+		DZA65_RS17740	0.44	-0.3
3,819,416	+		DZA65_RS17740	0.44	-0.1
3,819,417	-		DZA65_RS17740	0.44	-0.5
3,819,417	-		DZA65_RS17740	0.44	-0.0
3,819,420	-		DZA65_RS17740	0.45	-0.6
3,819,431	-		DZA65_RS17740	0.46	-0.8
3,819,452	+				+1.3
3,819,452	+		DZA65_RS17740	0.49	-0.6
3,819,452	+		DZA65_RS17740	0.49	-0.1
3,819,453	-		DZA65_RS17740	0.49	-1.3
3,819,453	-		DZA65_RS17740	0.49	+0.1
3,819,453	-		DZA65_RS17740	0.49	-0.2
3,819,453	-		DZA65_RS17740	0.49	-0.8
3,819,511	+		DZA65_RS17740	0.57	-0.6
3,819,521	+		DZA65_RS17740	0.59	-1.0
3,819,521	+		DZA65_RS17740	0.59	+1.3
3,819,522	-		DZA65_RS17740	0.59	-0.3
3,819,522	-		DZA65_RS17740	0.59	+0.5
3,819,539	+		DZA65_RS17740	0.61	+0.8
3,819,539	+		DZA65_RS17740	0.61	+0.2
3,819,539	+		DZA65_RS17740	0.61	+1.3
3,819,539	+		DZA65_RS17740	0.61	-0.3
3,819,539	+		DZA65_RS17740	0.61	+0.2
3,819,539	+		DZA65_RS17740	0.61	-0.6
3,819,539	+		DZA65_RS17740	0.61	+0.6
3,819,539	+		DZA65_RS17740	0.61	+0.5
3,819,540	-		DZA65_RS17740	0.61	-0.4
3,819,540	-		DZA65_RS17740	0.61	+1.3
3,819,540	-		DZA65_RS17740	0.61	-0.2
3,819,540	-		DZA65_RS17740	0.61	-0.0
3,819,541	+		DZA65_RS17740	0.61	-1.1
3,819,554	+		DZA65_RS17740	0.63	-0.8
3,819,554	+		DZA65_RS17740	0.63	+0.7
3,819,555	-		DZA65_RS17740	0.63	+0.0
3,819,555	-		DZA65_RS17740	0.63	-0.2
3,819,560	+		DZA65_RS17740	0.64	+0.7
3,819,560	+		DZA65_RS17740	0.64	+0.4
3,819,560	+		DZA65_RS17740	0.64	+0.2
3,819,561	-		DZA65_RS17740	0.64	-0.7
3,819,561	-		DZA65_RS17740	0.64	-1.7
3,819,561	-		DZA65_RS17740	0.64	+0.2
3,819,561	-		DZA65_RS17740	0.64	-0.3
3,819,561	-		DZA65_RS17740	0.64	+0.6
3,819,561	-		DZA65_RS17740	0.64	-0.0
3,819,662	+		DZA65_RS17740	0.78	+0.9
3,819,662	+		DZA65_RS17740	0.78	-0.7
3,819,662	+		DZA65_RS17740	0.78	+1.5
3,819,663	-		DZA65_RS17740	0.78	-0.5
3,819,663	-		DZA65_RS17740	0.78	+0.3
3,819,663	-		DZA65_RS17740	0.78	-0.6
3,819,663	-		DZA65_RS17740	0.78	-0.7
3,819,663	-		DZA65_RS17740	0.78	-0.6
3,819,665	+		DZA65_RS17740	0.79	+0.7
3,819,701	+		DZA65_RS17740	0.83	+0.1
3,819,701	+		DZA65_RS17740	0.83	+0.1
3,819,701	+		DZA65_RS17740	0.83	-0.1
3,819,702	-		DZA65_RS17740	0.84	+0.1
3,819,702	-		DZA65_RS17740	0.84	+1.3
3,819,702	-		DZA65_RS17740	0.84	+0.9
3,819,752	+				+1.0
3,819,752	+				-0.4
3,819,752	+				+0.5
3,819,752	+				+1.1
3,819,753	-				+0.0
3,819,753	-				-0.0
3,819,753	-				+0.6
3,819,753	-				+0.8
3,819,753	-				-0.6
3,819,753	-				-0.3
3,819,753	-				-2.0
3,819,761	-				-0.3