Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS17410

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
3,751,162	-		DZA65_RS17400	0.68	-0.3
3,751,204	-		DZA65_RS17400	0.71	-0.2
3,751,221	+		DZA65_RS17400	0.72	-0.0
3,751,347	+		DZA65_RS17400	0.80	+0.3
3,751,348	-		DZA65_RS17400	0.80	-0.7
3,751,348	-		DZA65_RS17400	0.80	-0.5
3,751,348	-		DZA65_RS17400	0.80	-0.3
3,751,375	+		DZA65_RS17400	0.82	-0.1
3,751,376	-		DZA65_RS17400	0.82	-0.5
3,751,376	-		DZA65_RS17400	0.82	-2.9
3,751,401	+		DZA65_RS17400	0.84	-0.0
3,751,582	-				+0.6
3,751,582	-				-0.3
3,751,680	+				-0.4
3,751,680	+				-0.6
3,751,681	-				-0.1
3,751,681	-				+1.0
3,751,681	-				-0.6
3,751,681	-				-0.2
3,751,681	-				+0.4
3,751,681	-				-1.3
3,751,690	-				+0.5
3,751,690	-				+0.3
3,751,692	+				-1.7
3,751,693	-				-0.8
3,751,699	-				-0.2
3,751,699	-				+0.0
3,751,699	-				+0.3
3,751,699	-				-0.1
3,751,708	+				-0.9
3,751,708	+				-0.0
3,751,708	+				+0.6
3,751,708	+				-0.3
3,751,708	+				-0.1
3,751,708	+				+0.2
3,751,708	+				+0.7
3,751,708	+				-1.3
3,751,708	+				+0.5
3,751,708	+				-0.0
3,751,708	+				-0.2
3,751,709	-				-0.3
3,751,709	-				-0.0
3,751,709	-				+0.4
3,751,709	-				+0.8
3,751,709	-				+0.5
3,751,709	-				+0.6
3,751,731	+				+0.4
3,751,731	+				-0.7
3,751,731	+				-1.3
3,751,731	+				-0.3
3,751,731	+				-0.2
3,751,779	+				+0.3
3,751,786	+		DZA65_RS17405	0.11	-0.5
3,751,811	+		DZA65_RS17405	0.17	-0.7
3,751,811	+		DZA65_RS17405	0.17	-0.1
3,751,811	+		DZA65_RS17405	0.17	-0.5
3,751,812	-		DZA65_RS17405	0.17	-0.2
3,751,812	-		DZA65_RS17405	0.17	+0.1
3,751,815	+		DZA65_RS17405	0.18	-0.2
3,751,815	+		DZA65_RS17405	0.18	+0.2
3,751,815	+		DZA65_RS17405	0.18	+0.1
3,751,815	+		DZA65_RS17405	0.18	-1.3
3,751,815	+		DZA65_RS17405	0.18	-0.2
3,751,815	+		DZA65_RS17405	0.18	+0.1
3,751,815	+		DZA65_RS17405	0.18	+0.0
3,751,815	+		DZA65_RS17405	0.18	+2.3
3,751,816	-		DZA65_RS17405	0.18	+0.3
3,751,816	-		DZA65_RS17405	0.18	+1.3
3,751,816	-		DZA65_RS17405	0.18	+0.0
3,751,816	-		DZA65_RS17405	0.18	+0.6
3,751,816	-		DZA65_RS17405	0.18	-1.7
3,751,818	+		DZA65_RS17405	0.19	-0.2
3,751,819	-		DZA65_RS17405	0.19	-1.2
3,751,866	+		DZA65_RS17405	0.30	-0.4
3,751,866	+		DZA65_RS17405	0.30	+0.1
3,751,866	+		DZA65_RS17405	0.30	-1.2
3,751,866	+		DZA65_RS17405	0.30	-2.0
3,751,866	+		DZA65_RS17405	0.30	-0.3
3,751,866	+		DZA65_RS17405	0.30	-0.3
3,751,866	+		DZA65_RS17405	0.30	-0.7
3,751,866	+		DZA65_RS17405	0.30	-0.4
3,751,867	-				-0.3
3,751,867	-		DZA65_RS17405	0.30	-1.0
3,751,867	-		DZA65_RS17405	0.30	-0.5
3,751,867	-		DZA65_RS17405	0.30	-1.2
3,751,868	+		DZA65_RS17405	0.31	-0.1
3,751,892	+		DZA65_RS17405	0.36	+0.1
3,751,892	+		DZA65_RS17405	0.36	-0.1
3,751,892	+		DZA65_RS17405	0.36	-0.4
3,751,892	+		DZA65_RS17405	0.36	-1.7
3,751,893	-		DZA65_RS17405	0.36	-1.0
3,751,893	-		DZA65_RS17405	0.36	+1.0
3,751,893	-		DZA65_RS17405	0.36	-0.2
3,751,896	+		DZA65_RS17405	0.37	-1.3
3,751,896	+		DZA65_RS17405	0.37	-1.2
3,751,896	+		DZA65_RS17405	0.37	-0.6
3,751,896	+		DZA65_RS17405	0.37	+0.3
3,751,896	+		DZA65_RS17405	0.37	-3.0
3,751,896	+		DZA65_RS17405	0.37	+0.2
3,751,896	+		DZA65_RS17405	0.37	-1.0
3,751,897	-		DZA65_RS17405	0.37	-0.9
3,751,897	-		DZA65_RS17405	0.37	-1.0
3,751,897	-		DZA65_RS17405	0.37	-0.2
3,751,897	-		DZA65_RS17405	0.37	-0.2
3,751,897	-		DZA65_RS17405	0.37	+0.9
3,751,897	-		DZA65_RS17405	0.37	-0.0
3,751,899	+		DZA65_RS17405	0.38	-1.3
3,751,899	+		DZA65_RS17405	0.38	-0.3
3,751,899	+		DZA65_RS17405	0.38	+1.0
3,751,899	+		DZA65_RS17405	0.38	-0.5
3,751,899	+		DZA65_RS17405	0.38	+0.1
3,751,900	-		DZA65_RS17405	0.38	-0.8
3,751,900	-		DZA65_RS17405	0.38	+0.2
3,751,900	-		DZA65_RS17405	0.38	-0.3
3,751,900	-		DZA65_RS17405	0.38	-0.3
3,751,910	+		DZA65_RS17405	0.40	-0.2
3,751,911	-		DZA65_RS17405	0.41	-1.9
3,751,961	+				+0.3
3,751,961	+		DZA65_RS17405	0.52	-0.9
3,751,961	+		DZA65_RS17405	0.52	+0.7
3,751,962	-		DZA65_RS17405	0.52	-1.1
3,751,988	+		DZA65_RS17405	0.59	-0.6
3,751,988	+		DZA65_RS17405	0.59	-0.8
3,751,989	-				+1.3
3,751,992	-		DZA65_RS17405	0.59	-1.3
3,752,012	+		DZA65_RS17405	0.64	-0.0
3,752,012	+		DZA65_RS17405	0.64	-0.7
3,752,012	+		DZA65_RS17405	0.64	-0.9
3,752,012	+		DZA65_RS17405	0.64	-0.7
3,752,012	+		DZA65_RS17405	0.64	-1.1
3,752,013	-		DZA65_RS17405	0.64	-1.1
3,752,013	-		DZA65_RS17405	0.64	-0.8
3,752,013	-		DZA65_RS17405	0.64	-0.4
3,752,013	-		DZA65_RS17405	0.64	+0.6
3,752,013	-		DZA65_RS17405	0.64	+0.3
3,752,013	-		DZA65_RS17405	0.64	-0.3
3,752,015	+		DZA65_RS17405	0.65	-0.4
3,752,030	+		DZA65_RS17405	0.68	-2.9
3,752,031	-		DZA65_RS17405	0.69	+0.9
3,752,031	-		DZA65_RS17405	0.69	+0.1
3,752,064	+		DZA65_RS17405	0.76	-0.1
3,752,064	+		DZA65_RS17405	0.76	-0.6
3,752,076	+		DZA65_RS17405	0.79	-0.4
3,752,077	-		DZA65_RS17405	0.79	-1.9
3,752,096	+				-1.7
3,752,096	+		DZA65_RS17405	0.84	-0.3
3,752,174	+				-0.9
3,752,174	+				+0.6
3,752,174	+				-0.3
3,752,174	+				+0.0
3,752,174	+				-1.8
3,752,175	-				-0.3
3,752,175	-				-0.5
3,752,175	-				+0.6
3,752,175	-				-0.3
3,752,175	-				-0.1
3,752,185	+				-0.8
3,752,185	+				+1.0
3,752,185	+				-0.2
3,752,186	-				+0.4
3,752,186	-				+0.9
3,752,191	+				-0.1
3,752,192	-				-0.0
3,752,192	-				+0.2
3,752,192	-				+1.0
3,752,267	+		DZA65_RS17410	0.19	-0.9
3,752,268	-		DZA65_RS17410	0.19	-0.5
3,752,268	-		DZA65_RS17410	0.19	+0.1
3,752,305	+		DZA65_RS17410	0.25	-0.5
3,752,306	-		DZA65_RS17410	0.25	-1.7
3,752,347	-		DZA65_RS17410	0.33	-1.2
3,752,347	-		DZA65_RS17410	0.33	-0.1
3,752,434	-		DZA65_RS17410	0.48	-1.3
3,752,434	-		DZA65_RS17410	0.48	+0.3
3,752,440	+		DZA65_RS17410	0.49	-0.5
3,752,468	+		DZA65_RS17410	0.54	-0.9
3,752,469	-		DZA65_RS17410	0.54	-1.5
3,752,469	-		DZA65_RS17410	0.54	-0.4
3,752,469	-		DZA65_RS17410	0.54	+0.5
3,752,469	-		DZA65_RS17410	0.54	+0.2
3,752,469	-		DZA65_RS17410	0.54	-1.3
3,752,469	-		DZA65_RS17410	0.54	-0.9
3,752,521	+		DZA65_RS17410	0.63	-0.1
3,752,522	-		DZA65_RS17410	0.63	-0.4
3,752,522	-		DZA65_RS17410	0.63	+0.5
3,752,554	+		DZA65_RS17410	0.69	+0.9
3,752,555	-		DZA65_RS17410	0.69	-1.4
3,752,569	+		DZA65_RS17410	0.72	+0.5
3,752,570	-		DZA65_RS17410	0.72	-0.2
3,752,616	+		DZA65_RS17410	0.80	-1.7
3,752,617	-		DZA65_RS17410	0.80	+0.3
3,752,617	-		DZA65_RS17410	0.80	+1.3
3,752,617	-		DZA65_RS17410	0.80	+0.1
3,752,623	+		DZA65_RS17410	0.81	+0.5
3,752,623	+		DZA65_RS17410	0.81	+0.5
3,752,623	+		DZA65_RS17410	0.81	-0.3
3,752,623	+		DZA65_RS17410	0.81	-1.6
3,752,623	+		DZA65_RS17410	0.81	-2.2
3,752,623	+		DZA65_RS17410	0.81	-0.5
3,752,624	-		DZA65_RS17410	0.81	+0.6
3,752,624	-		DZA65_RS17410	0.81	+1.3
3,752,624	-		DZA65_RS17410	0.81	+1.3
3,752,624	-		DZA65_RS17410	0.81	-0.4
3,752,624	-		DZA65_RS17410	0.81	+0.1
3,752,624	-		DZA65_RS17410	0.81	-3.0
3,752,624	-		DZA65_RS17410	0.81	-0.5
3,752,628	+		DZA65_RS17410	0.82	-0.5
3,752,628	+		DZA65_RS17410	0.82	+0.4
3,752,628	+		DZA65_RS17410	0.82	+1.3
3,752,629	-		DZA65_RS17410	0.82	-0.5
3,752,629	-		DZA65_RS17410	0.82	+0.4
3,752,629	-		DZA65_RS17410	0.82	-1.1
3,752,629	-		DZA65_RS17410	0.82	-1.5
3,752,724	+				-0.2
3,752,724	+				+1.0
3,752,724	+				+0.2
3,752,724	+				+0.6
3,752,724	+				+0.5
3,752,724	+				-0.0
3,752,725	-				+0.6
3,752,725	-				+0.3
3,752,725	-				-0.3
3,752,725	-				-0.6
3,752,725	-				-0.4
3,752,725	-				-0.2
3,752,725	-				+0.5
3,752,725	-				+0.2
3,752,828	-				-1.7
3,752,844	-				-0.8
3,752,852	-				+0.7
3,752,888	+				-0.2
3,752,888	+				-0.4
3,752,888	+				-0.3
3,752,888	+				-0.3
3,752,888	+				-1.0
3,752,889	-				+0.4
3,752,889	-				-1.3
3,752,889	-				+0.3
3,752,889	-				+0.1
3,752,957	+		DZA65_RS17415	0.65	-0.1
3,752,957	+		DZA65_RS17415	0.65	+0.0
3,752,962	+		DZA65_RS17415	0.71	-0.2
3,752,975	+		DZA65_RS17415	0.88	-0.9
3,753,000	-				-0.4
3,753,007	+				+1.1
3,753,007	+				+0.5
3,753,008	-				-0.5
3,753,008	-				+0.3
3,753,008	-				+0.5
3,753,008	-				-1.5
3,753,032	+				-0.8
3,753,033	-				+0.3
3,753,033	-				-1.7
3,753,146	-				-0.3
3,753,146	-				-1.0
3,753,152	+				-1.0
3,753,153	-				-1.3
3,753,191	-				+0.1
3,753,191	-				-2.0
3,753,191	-				-0.4
3,753,191	-				+0.3
3,753,191	-				-0.6
3,753,516	+				-2.9
3,753,558	+				-1.7
3,753,592	+				+0.3
3,753,615	+				-0.3
3,753,626	+				-0.6
3,753,626	+				-1.0
3,753,627	-				-0.5
3,753,627	-				-1.2
3,753,627	-				-0.3
3,753,673	-				-1.2
3,753,673	-				-0.6
3,753,673	-				+0.1
3,753,680	+				-1.0
3,753,687	+				+0.8
3,753,687	+				+0.3
3,753,687	+				-2.4
3,753,712	-		DZA65_RS17435	0.19	-1.6
3,753,719	+		DZA65_RS17435	0.23	+0.3