Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS16190

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
3,511,295	-				+0.9
3,511,322	+				+0.9
3,511,322	+				-0.2
3,511,322	+				+0.6
3,511,322	+				-1.6
3,511,323	-				+0.5
3,511,323	-				+0.6
3,511,323	-				-0.0
3,511,323	-				-1.6
3,511,323	-				+1.1
3,511,323	-				-0.3
3,511,380	+				+0.2
3,511,380	+				+0.9
3,511,380	+				-0.2
3,511,381	-				-0.3
3,511,381	-				+0.1
3,511,381	-				+0.4
3,511,494	+		DZA65_RS16185	0.13	+1.2
3,511,494	+		DZA65_RS16185	0.13	+0.6
3,511,495	-		DZA65_RS16185	0.13	+0.7
3,511,513	-		DZA65_RS16185	0.15	-0.1
3,511,664	+		DZA65_RS16185	0.36	-0.5
3,511,664	+		DZA65_RS16185	0.36	-0.8
3,511,664	+		DZA65_RS16185	0.36	+0.2
3,511,664	+		DZA65_RS16185	0.36	+0.2
3,511,665	-		DZA65_RS16185	0.36	-0.3
3,511,665	-		DZA65_RS16185	0.36	+0.0
3,511,728	+		DZA65_RS16185	0.45	+0.1
3,511,728	+		DZA65_RS16185	0.45	+0.6
3,511,729	-		DZA65_RS16185	0.45	-0.2
3,511,729	-		DZA65_RS16185	0.45	-0.2
3,511,729	-		DZA65_RS16185	0.45	+0.8
3,511,729	-		DZA65_RS16185	0.45	+0.0
3,511,743	+		DZA65_RS16185	0.47	+0.2
3,511,743	+		DZA65_RS16185	0.47	-0.8
3,511,743	+		DZA65_RS16185	0.47	-0.6
3,511,857	+		DZA65_RS16185	0.62	+0.3
3,511,870	-		DZA65_RS16185	0.64	+1.0
3,511,870	-		DZA65_RS16185	0.64	-0.5
3,511,870	-		DZA65_RS16185	0.64	-1.1
3,511,978	-		DZA65_RS16185	0.79	+0.6
3,511,978	-		DZA65_RS16185	0.79	-0.1
3,511,978	-		DZA65_RS16185	0.79	-1.6
3,512,024	+		DZA65_RS16185	0.85	-0.4
3,512,024	+		DZA65_RS16185	0.85	-0.9
3,512,025	-		DZA65_RS16185	0.85	-0.9
3,512,025	-		DZA65_RS16185	0.85	-0.3
3,512,085	+				-1.2
3,512,086	-				-0.7
3,512,086	-				-0.5
3,512,128	+				+0.1
3,512,128	+				-0.0
3,512,128	+				-0.8
3,512,129	-				-0.3
3,512,129	-				-0.9
3,512,129	-				+1.2
3,512,129	-				-1.4
3,512,130	+				-0.0
3,512,150	+				+0.1
3,512,150	+				-0.6
3,512,150	+				+0.6
3,512,150	+				-1.5
3,512,151	-				-0.7
3,512,151	-				-0.6
3,512,151	-				-1.1
3,512,151	-				+0.8
3,512,220	+				-0.2
3,512,220	+				-0.2
3,512,221	-				+0.7
3,512,221	-				-1.5
3,512,221	-				-0.0
3,512,221	-				-1.4
3,512,225	+				+1.1
3,512,225	+				-0.4
3,512,225	+				+0.6
3,512,226	-				-0.8
3,512,226	-				-0.1
3,512,238	+				-1.4
3,512,238	+				-1.4
3,512,238	+				-0.4
3,512,238	+				+0.2
3,512,239	-				-1.6
3,512,239	-				-1.9
3,512,239	-				+0.6
3,512,239	-				-0.6
3,512,239	-				+0.6
3,512,241	+				-0.4
3,512,241	+				+0.5
3,512,241	+				+0.2
3,512,241	+				-0.9
3,512,241	+				+0.5
3,512,241	+				-0.3
3,512,242	-				+0.2
3,512,242	-				-0.2
3,512,242	-				+0.2
3,512,242	-				+0.0
3,512,271	+				-0.8
3,512,301	+				-0.4
3,512,301	+				-0.2
3,512,405	+		DZA65_RS16190	0.15	-0.4
3,512,434	+		DZA65_RS16190	0.18	-0.8
3,512,434	+		DZA65_RS16190	0.18	+1.4
3,512,434	+		DZA65_RS16190	0.18	+0.1
3,512,435	-		DZA65_RS16190	0.18	+0.5
3,512,435	-		DZA65_RS16190	0.18	+0.0
3,512,438	+		DZA65_RS16190	0.18	+0.2
3,512,438	+		DZA65_RS16190	0.18	-1.0
3,512,439	-		DZA65_RS16190	0.18	+0.7
3,512,439	-		DZA65_RS16190	0.18	+0.3
3,512,443	+		DZA65_RS16190	0.19	-0.6
3,512,443	+		DZA65_RS16190	0.19	+0.6
3,512,547	+		DZA65_RS16190	0.30	+0.8
3,512,562	-		DZA65_RS16190	0.31	+0.7
3,512,576	+		DZA65_RS16190	0.33	+0.6
3,512,577	-		DZA65_RS16190	0.33	-1.6
3,512,597	+		DZA65_RS16190	0.35	+1.8
3,512,598	-		DZA65_RS16190	0.35	-0.6
3,512,598	-		DZA65_RS16190	0.35	-0.5
3,512,598	-		DZA65_RS16190	0.35	+0.2
3,512,802	-		DZA65_RS16190	0.56	+0.1
3,512,802	-		DZA65_RS16190	0.56	-0.6
3,512,802	-		DZA65_RS16190	0.56	+0.2
3,512,835	-		DZA65_RS16190	0.60	-0.4
3,512,835	-		DZA65_RS16190	0.60	+0.2
3,512,950	+		DZA65_RS16190	0.72	+0.1
3,512,951	-				+1.2
3,512,951	-		DZA65_RS16190	0.72	+0.2
3,513,035	+		DZA65_RS16190	0.80	-0.7
3,513,036	-		DZA65_RS16190	0.80	-0.3
3,513,050	+				-1.1
3,513,050	+		DZA65_RS16190	0.82	-0.8
3,513,050	+		DZA65_RS16190	0.82	+0.3
3,513,051	-		DZA65_RS16190	0.82	-0.4
3,513,051	-		DZA65_RS16190	0.82	-0.4
3,513,051	-		DZA65_RS16190	0.82	-0.5
3,513,051	-		DZA65_RS16190	0.82	-0.6
3,513,104	+		DZA65_RS16190	0.88	+1.2
3,513,104	+		DZA65_RS16190	0.88	+0.8
3,513,107	+		DZA65_RS16190	0.88	+0.1
3,513,107	+		DZA65_RS16190	0.88	-0.2
3,513,107	+		DZA65_RS16190	0.88	+0.6
3,513,107	+		DZA65_RS16190	0.88	-0.4
3,513,107	+		DZA65_RS16190	0.88	+0.5
3,513,107	+		DZA65_RS16190	0.88	+0.4
3,513,108	-		DZA65_RS16190	0.88	-0.2
3,513,108	-		DZA65_RS16190	0.88	-0.5
3,513,108	-		DZA65_RS16190	0.88	-1.1
3,513,108	-		DZA65_RS16190	0.88	+0.1
3,513,108	-		DZA65_RS16190	0.88	-0.4
3,513,108	-		DZA65_RS16190	0.88	-0.5
3,513,108	-		DZA65_RS16190	0.88	+0.2
3,513,108	-		DZA65_RS16190	0.88	-1.0
3,513,108	-		DZA65_RS16190	0.88	+0.6
3,513,275	+				+0.2
3,513,275	+				+0.2
3,513,276	-				-1.1
3,513,276	-				-0.6
3,513,276	-				-1.4
3,513,276	-				+0.2
3,513,281	+				-0.1
3,513,282	-				+1.2
3,513,282	-				-0.6
3,513,282	-				+0.4
3,513,336	+				+0.9
3,513,353	-				+0.0
3,513,421	+				+1.6
3,513,421	+				-0.9
3,513,421	+				-1.9
3,513,421	+				-1.2
3,513,421	+				-0.4
3,513,421	+				+0.2
3,513,422	-				-1.5
3,513,449	+				-0.9
3,513,486	+				-0.0
3,513,487	-				+0.2
3,513,591	+		DZA65_RS16195	0.14	-0.1
3,513,602	+		DZA65_RS16195	0.14	+0.0
3,513,682	+		DZA65_RS16195	0.20	+0.9
3,513,949	-		DZA65_RS16195	0.40	+0.0
3,513,949	-		DZA65_RS16195	0.40	+0.2
3,513,949	-		DZA65_RS16195	0.40	-0.9
3,513,949	-		DZA65_RS16195	0.40	+0.5
3,513,950	+		DZA65_RS16195	0.40	+0.8
3,513,951	-		DZA65_RS16195	0.40	-0.6
3,513,951	-		DZA65_RS16195	0.40	-0.1
3,513,951	-		DZA65_RS16195	0.40	-0.2
3,513,951	-		DZA65_RS16195	0.40	-1.4
3,514,005	+		DZA65_RS16195	0.44	+0.1
3,514,005	+		DZA65_RS16195	0.44	+0.2
3,514,006	-		DZA65_RS16195	0.44	-0.2
3,514,006	-		DZA65_RS16195	0.44	-0.4
3,514,006	-		DZA65_RS16195	0.44	+0.0
3,514,006	-		DZA65_RS16195	0.44	+1.2
3,514,048	+		DZA65_RS16195	0.47	+0.2
3,514,048	+		DZA65_RS16195	0.47	+0.1
3,514,048	+		DZA65_RS16195	0.47	-0.0
3,514,049	-		DZA65_RS16195	0.47	-0.2
3,514,049	-		DZA65_RS16195	0.47	-1.5
3,514,049	-		DZA65_RS16195	0.47	-0.4
3,514,049	-				+2.2
3,514,049	-		DZA65_RS16195	0.47	-0.0
3,514,170	+		DZA65_RS16195	0.56	-0.0
3,514,170	+		DZA65_RS16195	0.56	-0.6
3,514,170	+		DZA65_RS16195	0.56	-1.7
3,514,170	+		DZA65_RS16195	0.56	+1.2
3,514,170	+		DZA65_RS16195	0.56	+0.0
3,514,170	+		DZA65_RS16195	0.56	-0.3
3,514,171	-		DZA65_RS16195	0.56	+1.0
3,514,171	-		DZA65_RS16195	0.56	-0.2
3,514,171	-		DZA65_RS16195	0.56	-0.6
3,514,171	-		DZA65_RS16195	0.56	+0.0
3,514,171	-		DZA65_RS16195	0.56	+0.5
3,514,171	-		DZA65_RS16195	0.56	-0.7
3,514,171	-		DZA65_RS16195	0.56	-1.4
3,514,171	-		DZA65_RS16195	0.56	-1.7
3,514,203	+		DZA65_RS16195	0.58	-0.4
3,514,203	+		DZA65_RS16195	0.58	-0.6
3,514,203	+		DZA65_RS16195	0.58	+1.2
3,514,203	+		DZA65_RS16195	0.58	+1.2
3,514,203	+		DZA65_RS16195	0.58	+0.5
3,514,203	+		DZA65_RS16195	0.58	+0.5
3,514,203	+		DZA65_RS16195	0.58	-0.5
3,514,203	+		DZA65_RS16195	0.58	-1.4
3,514,203	+		DZA65_RS16195	0.58	-0.4
3,514,203	+		DZA65_RS16195	0.58	-1.6
3,514,203	+		DZA65_RS16195	0.58	-0.0
3,514,203	+		DZA65_RS16195	0.58	-0.2
3,514,203	+		DZA65_RS16195	0.58	-0.6
3,514,204	-		DZA65_RS16195	0.58	-1.3
3,514,204	-		DZA65_RS16195	0.58	-0.8
3,514,204	-		DZA65_RS16195	0.58	-0.9
3,514,204	-		DZA65_RS16195	0.58	-0.4
3,514,204	-		DZA65_RS16195	0.58	+0.5
3,514,204	-		DZA65_RS16195	0.58	-0.9
3,514,204	-		DZA65_RS16195	0.58	-0.1
3,514,204	-		DZA65_RS16195	0.58	+0.4
3,514,204	-		DZA65_RS16195	0.58	-1.5
3,514,204	-		DZA65_RS16195	0.58	-1.3
3,514,204	-		DZA65_RS16195	0.58	+0.1