Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS16110

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
3,487,567	+		DZA65_RS16100	0.47	+2.0
3,487,608	+		DZA65_RS16100	0.60	-1.0
3,487,608	+		DZA65_RS16100	0.60	-0.6
3,487,608	+		DZA65_RS16100	0.60	+0.9
3,487,608	+		DZA65_RS16100	0.60	+0.0
3,487,608	+		DZA65_RS16100	0.60	+0.5
3,487,608	+		DZA65_RS16100	0.60	-1.4
3,487,608	+		DZA65_RS16100	0.60	+0.6
3,487,609	-		DZA65_RS16100	0.60	-1.4
3,487,609	-		DZA65_RS16100	0.60	+0.7
3,487,609	-		DZA65_RS16100	0.60	-2.0
3,487,609	-		DZA65_RS16100	0.60	+1.5
3,487,609	-		DZA65_RS16100	0.60	-1.0
3,487,609	-		DZA65_RS16100	0.60	+0.8
3,487,612	+		DZA65_RS16100	0.61	+0.6
3,487,613	-		DZA65_RS16100	0.61	+0.1
3,487,738	+				-0.1
3,487,738	+				-0.1
3,487,738	+				+1.0
3,487,738	+				+0.1
3,487,738	+				-1.2
3,487,738	+				+1.2
3,487,738	+				+0.2
3,487,739	-				-0.2
3,487,739	-				-0.8
3,487,739	-				+0.3
3,487,739	-				+1.5
3,487,739	-				-0.6
3,487,739	-				-0.2
3,487,739	-				-0.5
3,487,789	+				-1.0
3,487,789	+				-0.2
3,487,812	+				+0.8
3,487,812	+				+0.3
3,487,812	+				-1.4
3,487,812	+				+0.4
3,487,813	-				+0.1
3,487,813	-				-2.7
3,487,813	-				-0.4
3,487,983	-		DZA65_RS16105	0.33	-0.6
3,487,983	-		DZA65_RS16105	0.33	-1.2
3,487,986	+		DZA65_RS16105	0.34	-1.2
3,487,986	+		DZA65_RS16105	0.34	+0.4
3,487,986	+		DZA65_RS16105	0.34	-0.5
3,488,042	+		DZA65_RS16105	0.48	-0.2
3,488,155	+		DZA65_RS16105	0.75	-0.2
3,488,155	+		DZA65_RS16105	0.75	+0.6
3,488,240	+				-1.1
3,488,243	+				-0.4
3,488,244	-				-2.3
3,488,351	+				-0.3
3,488,351	+				-0.8
3,488,351	+				-0.7
3,488,351	+				+0.0
3,488,351	+				-0.7
3,488,351	+				-0.0
3,488,352	-				+0.6
3,488,430	-				-0.6
3,488,439	+				-0.4
3,488,440	-				-0.3
3,488,440	-				-0.4
3,488,440	-				-0.5
3,488,450	+				+0.1
3,488,451	-				+0.7
3,488,451	-				-1.1
3,488,479	+				-0.9
3,488,486	+				-1.2
3,488,487	-				-0.4
3,488,496	+				+0.1
3,488,496	+				-2.1
3,488,497	-				+0.4
3,488,497	-				+0.9
3,488,525	+				+1.2
3,488,525	+				-0.9
3,488,525	+				-0.5
3,488,525	+				-0.3
3,488,525	+				-0.0
3,488,525	+				-0.6
3,488,525	+				-0.5
3,488,525	+				+0.1
3,488,525	+				-0.7
3,488,525	+				-1.6
3,488,525	+				-0.6
3,488,525	+				-0.2
3,488,525	+				-0.3
3,488,525	+				+0.4
3,488,525	+				-0.4
3,488,525	+				-1.8
3,488,526	-				-0.6
3,488,526	-				+0.9
3,488,526	-				+0.3
3,488,526	-				-1.6
3,488,526	-				-0.4
3,488,526	-				-2.0
3,488,526	-				-0.4
3,488,526	-				-0.3
3,488,526	-				-0.1
3,488,600	-		DZA65_RS16110	0.11	-0.5
3,488,600	-		DZA65_RS16110	0.11	-0.4
3,488,760	+				+2.2
3,488,761	-		DZA65_RS16110	0.36	+0.5
3,488,761	-		DZA65_RS16110	0.36	-0.5
3,488,877	+		DZA65_RS16110	0.54	-0.7
3,488,877	+		DZA65_RS16110	0.54	-1.7
3,488,877	+		DZA65_RS16110	0.54	-1.8
3,488,982	+		DZA65_RS16110	0.70	-0.7
3,488,982	+		DZA65_RS16110	0.70	-0.6
3,488,983	-		DZA65_RS16110	0.71	+0.2
3,488,983	-		DZA65_RS16110	0.71	-0.7
3,489,068	+		DZA65_RS16110	0.84	+0.4
3,489,068	+		DZA65_RS16110	0.84	+0.2
3,489,068	+		DZA65_RS16110	0.84	-1.0
3,489,100	-		DZA65_RS16110	0.89	-0.1
3,489,171	+				+0.0
3,489,172	-				-0.2
3,489,175	+				+0.2
3,489,175	+				+1.5
3,489,175	+				-0.3
3,489,175	+				-1.4
3,489,278	+				-1.6
3,489,279	-				-0.4
3,489,279	-				-0.1
3,489,279	-				+0.2
3,489,279	-				+2.1
3,489,280	+				-0.5
3,489,280	+				+1.2
3,489,280	+				-0.5
3,489,280	+				+0.1
3,489,280	+				-0.3
3,489,280	+				+1.1
3,489,280	+				-0.2
3,489,280	+				-0.5
3,489,280	+				-0.8
3,489,280	+				-0.4
3,489,280	+				-0.3
3,489,281	-				-0.0
3,489,281	-				-0.2
3,489,281	-				+0.2
3,489,281	-				-0.7
3,489,281	-				-0.4
3,489,281	-				+0.2
3,489,307	+				-1.4
3,489,307	+				-0.1
3,489,308	-				-0.3
3,489,308	-				+1.2
3,489,308	-				-0.8
3,489,333	+				+1.2
3,489,334	-				+0.6
3,489,366	+		DZA65_RS16115	0.14	+0.6
3,489,366	+		DZA65_RS16115	0.14	+0.8
3,489,425	+		DZA65_RS16115	0.27	-1.1
3,489,425	+		DZA65_RS16115	0.27	+0.1
3,489,425	+		DZA65_RS16115	0.27	-0.1
3,489,425	+		DZA65_RS16115	0.27	+0.5
3,489,425	+		DZA65_RS16115	0.27	+0.5
3,489,425	+		DZA65_RS16115	0.27	-0.7
3,489,425	+		DZA65_RS16115	0.27	-0.4
3,489,425	+		DZA65_RS16115	0.27	-0.7
3,489,425	+		DZA65_RS16115	0.27	-0.6
3,489,425	+		DZA65_RS16115	0.27	+1.0
3,489,426	-		DZA65_RS16115	0.27	-0.3
3,489,426	-		DZA65_RS16115	0.27	-0.4
3,489,426	-		DZA65_RS16115	0.27	-1.0
3,489,426	-		DZA65_RS16115	0.27	-0.1
3,489,426	-		DZA65_RS16115	0.27	-0.8
3,489,426	-		DZA65_RS16115	0.27	+0.2
3,489,426	-		DZA65_RS16115	0.27	+0.8
3,489,426	-		DZA65_RS16115	0.27	+0.0
3,489,426	-		DZA65_RS16115	0.27	+1.2
3,489,427	+		DZA65_RS16115	0.27	-0.4
3,489,427	+		DZA65_RS16115	0.27	-1.0
3,489,427	+		DZA65_RS16115	0.27	-0.1
3,489,427	+		DZA65_RS16115	0.27	-0.1
3,489,427	+		DZA65_RS16115	0.27	-0.8
3,489,428	-		DZA65_RS16115	0.28	+0.5
3,489,428	-		DZA65_RS16115	0.28	+0.0
3,489,428	-		DZA65_RS16115	0.28	-0.2
3,489,428	-		DZA65_RS16115	0.28	-0.8
3,489,428	-		DZA65_RS16115	0.28	-0.8
3,489,491	+		DZA65_RS16115	0.41	+0.4
3,489,491	+		DZA65_RS16115	0.41	-0.1
3,489,491	+		DZA65_RS16115	0.41	-0.5
3,489,491	+		DZA65_RS16115	0.41	-0.3
3,489,491	+		DZA65_RS16115	0.41	+1.0
3,489,491	+		DZA65_RS16115	0.41	-1.0
3,489,491	+		DZA65_RS16115	0.41	-0.6
3,489,491	+		DZA65_RS16115	0.41	+0.3
3,489,491	+		DZA65_RS16115	0.41	-0.0
3,489,491	+		DZA65_RS16115	0.41	-0.3
3,489,491	+		DZA65_RS16115	0.41	-0.8
3,489,491	+		DZA65_RS16115	0.41	+0.2
3,489,491	+		DZA65_RS16115	0.41	-0.7
3,489,491	+		DZA65_RS16115	0.41	-0.1
3,489,491	+		DZA65_RS16115	0.41	-0.1
3,489,491	+		DZA65_RS16115	0.41	-1.1
3,489,491	+		DZA65_RS16115	0.41	+0.5
3,489,491	+		DZA65_RS16115	0.41	+0.2
3,489,491	+		DZA65_RS16115	0.41	-0.5
3,489,491	+		DZA65_RS16115	0.41	-0.7
3,489,492	-		DZA65_RS16115	0.42	+0.2
3,489,492	-		DZA65_RS16115	0.42	-0.4
3,489,492	-		DZA65_RS16115	0.42	-0.8
3,489,492	-		DZA65_RS16115	0.42	-0.4
3,489,492	-		DZA65_RS16115	0.42	+0.2
3,489,492	-		DZA65_RS16115	0.42	+1.2
3,489,492	-		DZA65_RS16115	0.42	-0.8
3,489,492	-		DZA65_RS16115	0.42	-0.3
3,489,492	-		DZA65_RS16115	0.42	-0.4
3,489,492	-		DZA65_RS16115	0.42	-0.1
3,489,492	-		DZA65_RS16115	0.42	+0.1
3,489,492	-		DZA65_RS16115	0.42	+0.8
3,489,681	+		DZA65_RS16115	0.83	-0.0
3,489,682	-		DZA65_RS16115	0.83	-0.2
3,489,736	+				-1.0
3,489,736	+				+0.6
3,489,737	-				+0.2
3,489,737	-				+0.1
3,489,758	-				-0.6
3,489,824	+				-0.5
3,489,824	+				+0.1
3,489,824	+				-0.3
3,489,824	+				+0.6
3,489,824	+				-0.7
3,489,824	+				+1.2
3,489,824	+				-0.0
3,489,824	+				-0.2
3,489,824	+				-0.4
3,489,825	-				+1.2
3,489,825	-				-1.0
3,489,825	-				+0.7
3,489,825	-				+0.7
3,489,825	-				-1.1
3,489,825	-				-0.4
3,489,825	-				-1.0
3,489,825	-				-0.1
3,489,910	+				-0.3
3,489,911	-				-1.2
3,489,952	+				+1.7
3,489,952	+				-1.8
3,489,952	+				-0.5
3,489,952	+				+0.3
3,489,952	+				-2.4
3,489,953	-				-0.8
3,489,953	-				-1.1
3,489,953	-				+0.4
3,489,953	-				-1.1
3,490,081	+		DZA65_RS16120	0.12	-1.6
3,490,081	+		DZA65_RS16120	0.12	-0.5
3,490,100	+		DZA65_RS16120	0.13	-0.1
3,490,112	+		DZA65_RS16120	0.14	+0.2
3,490,112	+		DZA65_RS16120	0.14	-2.1
3,490,112	+		DZA65_RS16120	0.14	-2.1
3,490,113	-		DZA65_RS16120	0.14	-0.0
3,490,131	+		DZA65_RS16120	0.14	+0.2
3,490,131	+		DZA65_RS16120	0.14	-0.8
3,490,132	-		DZA65_RS16120	0.14	+0.6
3,490,132	-		DZA65_RS16120	0.14	-1.1