Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS15605

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
3,391,149	-				-0.3
3,391,149	-				+0.9
3,391,271	+				-1.3
3,391,271	+				+0.4
3,391,271	+				-0.9
3,391,272	-				+1.2
3,391,272	-				-0.6
3,391,272	-				+0.4
3,391,272	-				+0.2
3,391,272	-				-0.3
3,391,282	+				-0.3
3,391,282	+				-0.2
3,391,283	-				-0.1
3,391,326	+				-1.9
3,391,342	+				+0.2
3,391,343	-				-0.9
3,391,343	-				+0.4
3,391,387	+		DZA65_RS15600	0.13	-0.2
3,391,388	-		DZA65_RS15600	0.13	+0.4
3,391,397	+		DZA65_RS15600	0.14	-1.0
3,391,397	+		DZA65_RS15600	0.14	-0.5
3,391,398	-		DZA65_RS15600	0.14	-1.0
3,391,398	-		DZA65_RS15600	0.14	-1.2
3,391,398	-		DZA65_RS15600	0.14	-0.1
3,391,398	-		DZA65_RS15600	0.14	+0.3
3,391,451	-		DZA65_RS15600	0.20	+0.3
3,391,502	+		DZA65_RS15600	0.26	-0.7
3,391,502	+		DZA65_RS15600	0.26	+0.9
3,391,502	+		DZA65_RS15600	0.26	+1.0
3,391,502	+				+1.9
3,391,502	+		DZA65_RS15600	0.26	-0.1
3,391,502	+		DZA65_RS15600	0.26	+0.5
3,391,503	-		DZA65_RS15600	0.26	-0.0
3,391,503	-		DZA65_RS15600	0.26	-0.4
3,391,503	-		DZA65_RS15600	0.26	-2.4
3,391,503	-		DZA65_RS15600	0.26	+0.7
3,391,550	-		DZA65_RS15600	0.31	-0.1
3,391,717	+		DZA65_RS15600	0.50	-1.7
3,391,717	+		DZA65_RS15600	0.50	-1.1
3,391,717	+		DZA65_RS15600	0.50	-0.7
3,391,718	-		DZA65_RS15600	0.50	+0.2
3,391,718	-		DZA65_RS15600	0.50	+0.7
3,391,718	-		DZA65_RS15600	0.50	+0.6
3,391,718	-		DZA65_RS15600	0.50	-0.2
3,391,730	+		DZA65_RS15600	0.52	+1.0
3,391,730	+		DZA65_RS15600	0.52	-1.1
3,391,731	-		DZA65_RS15600	0.52	-0.4
3,391,731	-		DZA65_RS15600	0.52	+0.4
3,391,731	-		DZA65_RS15600	0.52	-0.1
3,391,731	-		DZA65_RS15600	0.52	+0.4
3,391,771	+		DZA65_RS15600	0.56	+0.1
3,391,771	+		DZA65_RS15600	0.56	+0.8
3,391,772	-		DZA65_RS15600	0.57	+0.5
3,391,772	-		DZA65_RS15600	0.57	+0.2
3,391,772	-		DZA65_RS15600	0.57	-0.9
3,391,772	-		DZA65_RS15600	0.57	+0.2
3,391,851	-		DZA65_RS15600	0.66	-0.5
3,391,851	-		DZA65_RS15600	0.66	+0.4
3,392,006	+		DZA65_RS15600	0.83	-0.4
3,392,103	+				-0.8
3,392,103	+				+2.2
3,392,103	+				-0.0
3,392,103	+				+0.2
3,392,103	+				-0.0
3,392,104	-				-1.3
3,392,104	-				+0.9
3,392,104	-				-1.3
3,392,104	-				-0.6
3,392,104	-				-0.6
3,392,183	+				-0.4
3,392,183	+				-0.0
3,392,183	+				-0.0
3,392,183	+				+0.0
3,392,184	-				+0.6
3,392,565	-		DZA65_RS15605	0.55	-0.4
3,392,588	-		DZA65_RS15605	0.58	+0.0
3,392,588	-		DZA65_RS15605	0.58	+1.7
3,392,588	-		DZA65_RS15605	0.58	+0.4
3,392,868	+				-0.3
3,392,869	-				-0.3
3,392,903	-				+0.3
3,392,943	+				-1.9
3,392,944	-				-0.6
3,392,944	-				+0.8
3,392,944	-				-0.6
3,392,944	-				-0.8
3,392,962	-				-1.5
3,393,163	-		DZA65_RS15610	0.53	-0.9
3,393,163	-		DZA65_RS15610	0.53	-0.4
3,393,163	-		DZA65_RS15610	0.53	+0.7
3,393,163	-		DZA65_RS15610	0.53	+0.4
3,393,163	-				+1.2
3,393,290	+		DZA65_RS15610	0.83	-1.0
3,393,290	+		DZA65_RS15610	0.83	+0.7
3,393,291	-		DZA65_RS15610	0.83	+0.9
3,393,358	+				-0.8
3,393,399	-				-1.0
3,393,399	-				-0.2
3,393,425	+				-1.1
3,393,426	-				-0.9
3,393,446	+				-1.6
3,393,446	+				+0.1
3,393,446	+				-1.3
3,393,450	+				-1.6
3,393,450	+				-0.2
3,393,450	+				+1.0
3,393,450	+				-0.1
3,393,450	+				+0.4
3,393,450	+				-1.2
3,393,450	+				-0.2
3,393,450	+				-2.0
3,393,451	-				+2.4
3,393,451	-				-0.1
3,393,451	-				+0.0
3,393,451	-				+0.6
3,393,451	-				-0.4
3,393,451	-				+1.3
3,393,451	-				-0.1
3,393,451	-				-0.0
3,393,451	-				-0.1
3,393,451	-				+0.2
3,393,451	-				+3.8
3,393,451	-				+0.8
3,393,499	+				+1.2
3,393,500	-				-1.4
3,393,521	+		DZA65_RS15615	0.12	-0.8
3,393,521	+		DZA65_RS15615	0.12	-0.2
3,393,521	+		DZA65_RS15615	0.12	-0.2
3,393,522	-		DZA65_RS15615	0.12	-0.7
3,393,522	-		DZA65_RS15615	0.12	-0.6
3,393,522	-		DZA65_RS15615	0.12	+0.7
3,393,522	-				-0.8
3,393,673	+		DZA65_RS15615	0.26	-0.3
3,393,673	+		DZA65_RS15615	0.26	-0.4
3,393,673	+		DZA65_RS15615	0.26	+0.5
3,393,674	-		DZA65_RS15615	0.26	+0.6
3,393,681	+		DZA65_RS15615	0.27	-0.7
3,393,682	-		DZA65_RS15615	0.27	-0.2
3,393,719	+		DZA65_RS15615	0.30	-2.0
3,393,719	+		DZA65_RS15615	0.30	-0.2
3,393,785	-		DZA65_RS15615	0.37	+0.3
3,393,872	+		DZA65_RS15615	0.45	-0.6