Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS15285

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
3,314,367	+		DZA65_RS15280	0.39	+0.2
3,314,368	-		DZA65_RS15280	0.39	+0.5
3,314,384	-		DZA65_RS15280	0.40	-1.4
3,314,384	-		DZA65_RS15280	0.40	-1.7
3,314,408	+		DZA65_RS15280	0.42	-0.5
3,314,408	+		DZA65_RS15280	0.42	-1.3
3,314,408	+		DZA65_RS15280	0.42	+0.7
3,314,409	-		DZA65_RS15280	0.42	+1.2
3,314,679	+		DZA65_RS15280	0.65	-0.4
3,314,679	+		DZA65_RS15280	0.65	-1.1
3,314,679	+		DZA65_RS15280	0.65	-0.8
3,314,688	-		DZA65_RS15280	0.66	-1.2
3,314,695	-		DZA65_RS15280	0.66	-0.5
3,314,766	-		DZA65_RS15280	0.72	-1.3
3,314,837	-		DZA65_RS15280	0.78	-1.2
3,314,849	-		DZA65_RS15280	0.79	-0.9
3,315,103	+				+0.4
3,315,103	+				-0.0
3,315,103	+				-0.4
3,315,104	-				+0.1
3,315,104	-				+0.3
3,315,145	+				+0.3
3,315,145	+				-0.6
3,315,145	+				-0.3
3,315,145	+				-0.1
3,315,202	+				-1.5
3,315,410	+		DZA65_RS15285	0.10	+1.6
3,315,410	+		DZA65_RS15285	0.10	-1.4
3,315,410	+		DZA65_RS15285	0.10	-0.8
3,315,410	+		DZA65_RS15285	0.10	-1.2
3,315,411	-		DZA65_RS15285	0.10	-0.3
3,315,411	-		DZA65_RS15285	0.10	-0.8
3,315,411	-		DZA65_RS15285	0.10	-0.1
3,315,411	-		DZA65_RS15285	0.10	-1.1
3,315,560	+		DZA65_RS15285	0.17	-0.9
3,315,561	-		DZA65_RS15285	0.17	+0.5
3,315,700	+		DZA65_RS15285	0.24	-0.8
3,316,115	+		DZA65_RS15285	0.43	+0.5
3,316,176	+				-0.8
3,316,280	+		DZA65_RS15285	0.51	+0.5
3,316,488	+		DZA65_RS15285	0.60	-1.7
3,316,564	-		DZA65_RS15285	0.64	-0.3
3,316,593	-				+0.2
3,316,596	+				+0.2
3,316,597	-		DZA65_RS15285	0.65	-2.0
3,316,630	+		DZA65_RS15285	0.67	+0.0
3,316,630	+		DZA65_RS15285	0.67	-2.4
3,316,631	-		DZA65_RS15285	0.67	-0.7
3,316,739	-		DZA65_RS15285	0.72	-1.8
3,316,845	-		DZA65_RS15285	0.77	-2.0
3,317,070	-		DZA65_RS15285	0.88	-0.2
3,317,181	-				-0.2
3,317,191	-				-0.4
3,317,242	+				-0.2
3,317,291	+				+0.5
3,317,374	+				-0.2
3,317,375	-				+0.2
3,317,375	-				-0.3
3,317,375	-				-0.3
3,317,375	-				+2.7
3,317,425	+				+0.2
3,317,436	+				-0.4
3,317,437	-				-0.1
3,317,539	-		DZA65_RS15290	0.15	+0.2
3,317,690	+		DZA65_RS15290	0.40	-0.2
3,317,690	+		DZA65_RS15290	0.40	-0.4
3,317,690	+		DZA65_RS15290	0.40	+0.2
3,317,690	+		DZA65_RS15290	0.40	-0.2
3,317,691	-		DZA65_RS15290	0.40	-0.3
3,317,691	-		DZA65_RS15290	0.40	-0.1
3,317,691	-		DZA65_RS15290	0.40	-1.4
3,317,691	-		DZA65_RS15290	0.40	-2.4
3,317,691	-		DZA65_RS15290	0.40	-0.8
3,317,736	+		DZA65_RS15290	0.47	-1.0
3,317,739	+		DZA65_RS15290	0.47	+1.2
3,317,927	+		DZA65_RS15290	0.78	-1.3
3,317,927	+		DZA65_RS15290	0.78	+0.3
3,317,927	+		DZA65_RS15290	0.78	-1.4
3,317,927	+		DZA65_RS15290	0.78	-0.4
3,317,927	+		DZA65_RS15290	0.78	+0.4
3,317,928	-		DZA65_RS15290	0.78	+0.5
3,317,928	-		DZA65_RS15290	0.78	-1.0
3,317,928	-		DZA65_RS15290	0.78	+0.4
3,317,928	-		DZA65_RS15290	0.78	+0.3
3,317,928	-		DZA65_RS15290	0.78	-0.1
3,317,928	-		DZA65_RS15290	0.78	-0.6
3,317,928	-		DZA65_RS15290	0.78	-0.8
3,317,937	+		DZA65_RS15290	0.80	-0.4
3,317,937	+		DZA65_RS15290	0.80	-0.7
3,317,937	+		DZA65_RS15290	0.80	-0.6
3,317,937	+		DZA65_RS15290	0.80	-1.3
3,317,937	+		DZA65_RS15290	0.80	+0.5
3,317,937	+		DZA65_RS15290	0.80	+0.5
3,317,937	+		DZA65_RS15290	0.80	+0.4
3,317,937	+		DZA65_RS15290	0.80	+0.4
3,317,938	-		DZA65_RS15290	0.80	+0.6
3,317,938	-		DZA65_RS15290	0.80	-1.0
3,317,938	-		DZA65_RS15290	0.80	+0.1
3,317,938	-		DZA65_RS15290	0.80	-0.3
3,317,941	+		DZA65_RS15290	0.80	-1.0
3,317,942	-		DZA65_RS15290	0.80	-1.7
3,317,995	+		DZA65_RS15290	0.89	-0.1
3,317,996	-		DZA65_RS15290	0.89	+0.7
3,318,123	-				-1.2
3,318,123	-				+0.9
3,318,123	-				-0.9
3,318,123	-				+0.5
3,318,130	+				+0.0
3,318,130	+				-0.1
3,318,130	+				+1.2
3,318,130	+				-0.3
3,318,130	+				+1.2
3,318,130	+				+0.3
3,318,130	+				+0.3
3,318,130	+				-0.3
3,318,130	+				+0.5
3,318,130	+				-0.5
3,318,131	-				-0.5
3,318,131	-				-0.5
3,318,131	-				-1.0
3,318,131	-				-0.2
3,318,131	-				+0.4
3,318,131	-				+2.0
3,318,131	-				-0.5
3,318,131	-				+0.2
3,318,142	-				-0.7
3,318,142	-				-0.8
3,318,142	-				-0.8
3,318,149	-				-1.3
3,318,153	+				-2.0
3,318,178	+				+0.0
3,318,288	+		DZA65_RS15295	0.25	+0.1
3,318,288	+		DZA65_RS15295	0.25	-0.4
3,318,288	+		DZA65_RS15295	0.25	-1.3
3,318,288	+		DZA65_RS15295	0.25	+1.4
3,318,288	+		DZA65_RS15295	0.25	-1.2
3,318,288	+		DZA65_RS15295	0.25	-0.4
3,318,288	+		DZA65_RS15295	0.25	-1.8
3,318,289	-		DZA65_RS15295	0.25	-0.2
3,318,289	-		DZA65_RS15295	0.25	-1.0
3,318,289	-		DZA65_RS15295	0.25	-1.3
3,318,289	-		DZA65_RS15295	0.25	-0.4
3,318,289	-		DZA65_RS15295	0.25	+0.0
3,318,289	-		DZA65_RS15295	0.25	-1.9
3,318,289	-		DZA65_RS15295	0.25	-0.8
3,318,292	+		DZA65_RS15295	0.25	-0.4
3,318,292	+		DZA65_RS15295	0.25	-0.1
3,318,292	+		DZA65_RS15295	0.25	+0.2
3,318,292	+		DZA65_RS15295	0.25	+0.0
3,318,293	-		DZA65_RS15295	0.26	+0.3
3,318,293	-		DZA65_RS15295	0.26	+0.2
3,318,293	-		DZA65_RS15295	0.26	-0.8
3,318,293	-		DZA65_RS15295	0.26	-0.4
3,318,293	-		DZA65_RS15295	0.26	-0.7
3,318,293	-		DZA65_RS15295	0.26	+0.5
3,318,293	-		DZA65_RS15295	0.26	-1.4