Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS12015

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
2,555,313	+				+1.6
2,555,319	-		DZA65_RS22895	0.37	-2.0
2,555,335	+		DZA65_RS22895	0.41	-1.5
2,555,369	-		DZA65_RS22895	0.48	-0.2
2,555,449	-		DZA65_RS22895	0.67	-1.3
2,555,461	-		DZA65_RS22895	0.70	-0.8
2,555,619	-				-1.2
2,555,740	-				-0.2
2,555,755	-				-2.7
2,555,810	-				-0.0
2,555,810	-				+0.4
2,555,871	+				-0.1
2,555,871	+				-0.0
2,555,871	+				-0.0
2,555,905	+				+0.3
2,555,905	+				-0.5
2,555,905	+				-0.4
2,555,905	+				+0.7
2,555,906	-				-0.3
2,555,910	-				+1.2
2,555,966	+				+1.3
2,555,977	-				-0.3
2,555,995	-				+0.1
2,556,012	+				-0.2
2,556,062	+				-0.6
2,556,066	+				-0.2
2,556,066	+				+0.8
2,556,066	+				-2.2
2,556,066	+				-0.1
2,556,066	+				+0.6
2,556,066	+				-0.4
2,556,067	-				-1.0
2,556,067	-				-1.0
2,556,067	-				+1.4
2,556,067	-				-0.6
2,556,067	-				-0.8
2,556,169	+				-1.3
2,556,169	+				-0.2
2,556,170	-				+0.1
2,556,170	-				+0.3
2,556,216	+				-1.1
2,556,232	+				-0.4
2,556,252	+				-1.0
2,556,252	+				-1.2
2,556,253	-				-1.2
2,556,350	+				-0.0
2,556,351	-				-0.4
2,556,351	-				-0.2
2,556,351	-				-1.1
2,556,351	-				+0.3
2,556,351	-				-0.8
2,556,354	+				+0.7
2,556,354	+				-0.0
2,556,354	+				-1.0
2,556,354	+				-1.4
2,556,354	+				-0.7
2,556,354	+				-0.3
2,556,354	+				-0.2
2,556,354	+				-0.9
2,556,354	+				+0.0
2,556,354	+				-1.0
2,556,355	-				+1.0
2,556,355	-				-1.9
2,556,355	-				-0.3
2,556,355	-				-1.2
2,556,355	-				-0.0
2,556,355	-				-0.8
2,556,452	+		DZA65_RS12015	0.14	-0.8
2,556,452	+		DZA65_RS12015	0.14	-1.0
2,556,453	-		DZA65_RS12015	0.14	-0.3
2,556,453	-		DZA65_RS12015	0.14	-0.5
2,556,453	-		DZA65_RS12015	0.14	-0.1
2,556,794	-		DZA65_RS12015	0.39	-1.3
2,557,622	+				+0.5
2,557,641	+				+0.5
2,557,642	-				+0.7
2,557,642	-				-0.5
2,557,660	+				-0.2
2,557,660	+				-0.8
2,557,660	+				-0.0
2,557,660	+				-0.7
2,557,661	-				+0.1
2,557,661	-				-0.7
2,557,661	-				-0.6
2,557,661	-				+0.2
2,557,661	-				+0.2
2,557,661	-				+0.6
2,557,661	-				-0.6
2,557,665	+				+0.2
2,557,665	+				-0.6
2,557,665	+				+0.5
2,557,665	+				+0.5
2,557,666	-				-2.4
2,557,666	-				-0.8
2,557,666	-				+0.4
2,557,666	-				-0.7
2,557,666	-				-0.0
2,557,666	-				+1.6
2,557,674	+				+0.2
2,557,674	+				+0.5
2,557,674	+				-0.2
2,557,674	+				-0.1
2,557,674	+				+0.7
2,557,675	-				-1.6
2,557,675	-				-0.6
2,557,678	-				+0.1
2,557,678	-				-0.2
2,557,686	+				-0.6
2,557,686	+				+0.1
2,557,687	-				+0.6
2,557,700	+				-0.0
2,557,732	-				+1.0
2,557,757	+				+0.2
2,557,758	-				-0.5
2,557,765	+				+0.6
2,557,765	+				+1.6
2,557,766	-				-0.9
2,557,808	+				+1.2
2,557,808	+				+0.7
2,557,808	+				-0.6
2,557,808	+				-0.2
2,557,808	+				-0.0
2,557,808	+				-1.3
2,557,809	-				-0.0
2,557,809	-				+0.5
2,557,809	-				-0.6
2,557,809	-				-0.6
2,557,809	-				-0.7
2,557,809	-				+0.1
2,557,809	-				+0.2
2,557,809	-				-1.0
2,557,809	-				-0.6
2,557,809	-				+0.2
2,557,809	-				-2.3
2,557,810	+				-0.0
2,557,811	-				-0.5
2,557,811	-				-0.4
2,557,825	+				+0.4
2,557,828	+				+0.1
2,557,828	+				+0.2
2,557,828	+				-0.0
2,557,828	+				-0.7
2,557,829	-				-0.2
2,557,841	+				-0.6
2,557,857	+				+0.2
2,557,857	+				-1.0
2,557,858	-				+0.5
2,557,888	-				-0.9
2,557,888	-				-0.2
2,557,888	-				+0.3
2,558,186	+				-0.2
2,558,186	+				+0.1
2,558,187	-				+0.2
2,558,187	-				+1.7
2,558,236	+				-1.8
2,558,237	-				-0.2
2,558,360	-		DZA65_RS12020	0.18	-0.0
2,558,482	+		DZA65_RS12020	0.51	-0.0
2,558,482	+		DZA65_RS12020	0.51	+0.4
2,558,483	-		DZA65_RS12020	0.51	+0.4
2,558,483	-		DZA65_RS12020	0.51	-0.2
2,558,486	+		DZA65_RS12020	0.52	-0.0
2,558,532	-		DZA65_RS12020	0.65	-0.6
2,558,537	+		DZA65_RS12020	0.66	-2.0
2,558,546	+		DZA65_RS12020	0.69	-0.2
2,558,549	-		DZA65_RS12020	0.69	-1.2
2,558,585	+		DZA65_RS12020	0.79	-1.2
2,558,586	-		DZA65_RS12020	0.80	-0.7
2,558,586	-		DZA65_RS12020	0.80	-1.8
2,558,608	-		DZA65_RS12020	0.86	-0.3