Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS11965 and DZA65_RS11970 are separated by 95 nucleotides DZA65_RS11970 and DZA65_RS11980 are separated by 955 nucleotides
DZA65_RS11965: DZA65_RS11965 - IS630 family transposase, at 2,549,836 to 2,550,873
_RS11965
DZA65_RS11970: DZA65_RS11970 - hypothetical protein, at 2,550,969 to 2,551,307
_RS11970
DZA65_RS11980: DZA65_RS11980 - type II toxin-antitoxin system RelE/ParE family toxin, at 2,552,263 to 2,552,574
_RS11980
Position (kb)
2550
2551
2552 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2550.970 kb on + strand at 2550.970 kb on + strand at 2550.970 kb on + strand at 2550.970 kb on + strand at 2550.974 kb on + strand at 2550.988 kb on - strand at 2551.031 kb on + strand, within DZA65_RS11970 at 2551.031 kb on + strand, within DZA65_RS11970 at 2551.032 kb on - strand, within DZA65_RS11970 at 2551.032 kb on - strand, within DZA65_RS11970 at 2551.032 kb on - strand, within DZA65_RS11970 at 2551.040 kb on + strand, within DZA65_RS11970 at 2551.040 kb on + strand, within DZA65_RS11970 at 2551.041 kb on - strand, within DZA65_RS11970 at 2551.041 kb on - strand, within DZA65_RS11970 at 2551.299 kb on + strand at 2551.300 kb on - strand at 2551.300 kb on - strand at 2551.338 kb on - strand at 2551.526 kb on + strand at 2551.526 kb on + strand at 2551.527 kb on - strand at 2551.527 kb on - strand at 2551.527 kb on - strand at 2551.527 kb on - strand at 2551.856 kb on + strand at 2551.857 kb on - strand at 2551.857 kb on - strand at 2552.087 kb on + strand at 2552.087 kb on + strand at 2552.087 kb on + strand at 2552.087 kb on + strand at 2552.087 kb on + strand at 2552.087 kb on + strand at 2552.087 kb on + strand at 2552.087 kb on + strand at 2552.102 kb on + strand at 2552.102 kb on + strand at 2552.102 kb on + strand at 2552.264 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 2,550,970 + +0.2 2,550,970 + -0.0 2,550,970 + -0.8 2,550,970 + -0.3 2,550,974 + -0.7 2,550,988 - +0.5 2,551,031 + DZA65_RS11970 0.18 -1.3 2,551,031 + DZA65_RS11970 0.18 -0.6 2,551,032 - DZA65_RS11970 0.19 -3.1 2,551,032 - DZA65_RS11970 0.19 -2.5 2,551,032 - DZA65_RS11970 0.19 -2.2 2,551,040 + DZA65_RS11970 0.21 +0.1 2,551,040 + DZA65_RS11970 0.21 -0.4 2,551,041 - DZA65_RS11970 0.21 -0.5 2,551,041 - DZA65_RS11970 0.21 -0.0 2,551,299 + -0.0 2,551,300 - -0.0 2,551,300 - -0.9 2,551,338 - +1.0 2,551,526 + -0.4 2,551,526 + +0.8 2,551,527 - -1.3 2,551,527 - +1.0 2,551,527 - -0.6 2,551,527 - -0.4 2,551,856 + +0.1 2,551,857 - -0.4 2,551,857 - -0.2 2,552,087 + -0.8 2,552,087 + +0.3 2,552,087 + +1.6 2,552,087 + -0.9 2,552,087 + +0.2 2,552,087 + -0.2 2,552,087 + +0.6 2,552,087 + +0.5 2,552,102 + +1.6 2,552,102 + -0.5 2,552,102 + -0.7 2,552,264 + -0.6
Or see this region's nucleotide sequence