Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS11970

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS11965 and DZA65_RS11970 are separated by 95 nucleotidesDZA65_RS11970 and DZA65_RS11980 are separated by 955 nucleotides DZA65_RS11965: DZA65_RS11965 - IS630 family transposase, at 2,549,836 to 2,550,873 _RS11965 DZA65_RS11970: DZA65_RS11970 - hypothetical protein, at 2,550,969 to 2,551,307 _RS11970 DZA65_RS11980: DZA65_RS11980 - type II toxin-antitoxin system RelE/ParE family toxin, at 2,552,263 to 2,552,574 _RS11980 Position (kb) 2550 2551 2552Strain fitness (log2 ratio) -3 -2 -1 0 1at 2550.970 kb on + strandat 2550.970 kb on + strandat 2550.970 kb on + strandat 2550.970 kb on + strandat 2550.974 kb on + strandat 2550.988 kb on - strandat 2551.031 kb on + strand, within DZA65_RS11970at 2551.031 kb on + strand, within DZA65_RS11970at 2551.032 kb on - strand, within DZA65_RS11970at 2551.032 kb on - strand, within DZA65_RS11970at 2551.032 kb on - strand, within DZA65_RS11970at 2551.040 kb on + strand, within DZA65_RS11970at 2551.040 kb on + strand, within DZA65_RS11970at 2551.041 kb on - strand, within DZA65_RS11970at 2551.041 kb on - strand, within DZA65_RS11970at 2551.299 kb on + strandat 2551.300 kb on - strandat 2551.300 kb on - strandat 2551.338 kb on - strandat 2551.526 kb on + strandat 2551.526 kb on + strandat 2551.527 kb on - strandat 2551.527 kb on - strandat 2551.527 kb on - strandat 2551.527 kb on - strandat 2551.856 kb on + strandat 2551.857 kb on - strandat 2551.857 kb on - strandat 2552.087 kb on + strandat 2552.087 kb on + strandat 2552.087 kb on + strandat 2552.087 kb on + strandat 2552.087 kb on + strandat 2552.087 kb on + strandat 2552.087 kb on + strandat 2552.087 kb on + strandat 2552.102 kb on + strandat 2552.102 kb on + strandat 2552.102 kb on + strandat 2552.264 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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2,550,970 + +0.2
2,550,970 + -0.0
2,550,970 + -0.8
2,550,970 + -0.3
2,550,974 + -0.7
2,550,988 - +0.5
2,551,031 + DZA65_RS11970 0.18 -1.3
2,551,031 + DZA65_RS11970 0.18 -0.6
2,551,032 - DZA65_RS11970 0.19 -3.1
2,551,032 - DZA65_RS11970 0.19 -2.5
2,551,032 - DZA65_RS11970 0.19 -2.2
2,551,040 + DZA65_RS11970 0.21 +0.1
2,551,040 + DZA65_RS11970 0.21 -0.4
2,551,041 - DZA65_RS11970 0.21 -0.5
2,551,041 - DZA65_RS11970 0.21 -0.0
2,551,299 + -0.0
2,551,300 - -0.0
2,551,300 - -0.9
2,551,338 - +1.0
2,551,526 + -0.4
2,551,526 + +0.8
2,551,527 - -1.3
2,551,527 - +1.0
2,551,527 - -0.6
2,551,527 - -0.4
2,551,856 + +0.1
2,551,857 - -0.4
2,551,857 - -0.2
2,552,087 + -0.8
2,552,087 + +0.3
2,552,087 + +1.6
2,552,087 + -0.9
2,552,087 + +0.2
2,552,087 + -0.2
2,552,087 + +0.6
2,552,087 + +0.5
2,552,102 + +1.6
2,552,102 + -0.5
2,552,102 + -0.7
2,552,264 + -0.6

Or see this region's nucleotide sequence