Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS11200

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
2,372,547	+		DZA65_RS11195	0.35	-0.4
2,372,560	+		DZA65_RS11195	0.36	+0.3
2,372,561	-		DZA65_RS11195	0.37	-1.2
2,372,561	-		DZA65_RS11195	0.37	-0.4
2,372,629	+		DZA65_RS11195	0.44	-1.0
2,372,629	+		DZA65_RS11195	0.44	+0.7
2,372,649	+		DZA65_RS11195	0.46	-0.6
2,372,812	-		DZA65_RS11195	0.63	+0.1
2,372,872	+		DZA65_RS11195	0.69	-1.8
2,372,873	-		DZA65_RS11195	0.69	+0.6
2,372,876	-		DZA65_RS11195	0.69	-0.3
2,372,893	+		DZA65_RS11195	0.71	+1.4
2,372,906	+		DZA65_RS11195	0.72	-0.1
2,372,906	+				-0.3
2,372,911	+		DZA65_RS11195	0.73	+0.8
2,372,925	-		DZA65_RS11195	0.74	-0.3
2,372,925	-		DZA65_RS11195	0.74	-1.3
2,372,929	+		DZA65_RS11195	0.75	-0.6
2,372,930	-		DZA65_RS11195	0.75	+0.4
2,372,963	+		DZA65_RS11195	0.78	+0.3
2,372,964	-		DZA65_RS11195	0.78	-2.0
2,373,052	+		DZA65_RS11195	0.88	+0.2
2,373,052	+		DZA65_RS11195	0.88	+0.1
2,373,053	-		DZA65_RS11195	0.88	-0.2
2,373,086	+				-2.2
2,373,087	-				+1.0
2,373,289	+				+0.4
2,373,451	-				-0.0
2,373,451	-				+0.2
2,373,459	+				+0.2
2,373,465	-				+0.2
2,373,571	-		DZA65_RS11200	0.14	-1.6
2,373,659	-		DZA65_RS11200	0.27	-1.0
2,373,662	+		DZA65_RS11200	0.27	+0.0
2,373,663	-		DZA65_RS11200	0.27	-2.2
2,373,680	+		DZA65_RS11200	0.30	-0.4
2,373,750	+		DZA65_RS11200	0.40	+0.3
2,373,751	-		DZA65_RS11200	0.40	-0.1
2,373,848	+		DZA65_RS11200	0.54	-0.2
2,373,895	-		DZA65_RS11200	0.61	-0.9
2,373,902	+		DZA65_RS11200	0.62	-1.3
2,373,914	+		DZA65_RS11200	0.63	-0.5
2,373,914	+		DZA65_RS11200	0.63	-1.3
2,373,915	-		DZA65_RS11200	0.64	-1.0
2,373,964	+		DZA65_RS11200	0.71	+0.1
2,373,965	-		DZA65_RS11200	0.71	-1.0
2,374,017	+		DZA65_RS11200	0.78	+0.2
2,374,017	+		DZA65_RS11200	0.78	+0.3
2,374,019	+		DZA65_RS11200	0.78	-1.3
2,374,019	+		DZA65_RS11200	0.78	-0.8
2,374,019	+		DZA65_RS11200	0.78	-2.2
2,374,071	-		DZA65_RS11200	0.86	-0.3
2,374,088	+		DZA65_RS11200	0.88	-1.5
2,374,088	+		DZA65_RS11200	0.88	+0.9
2,374,089	-		DZA65_RS11200	0.88	+0.0
2,374,090	+				+0.0
2,374,091	-		DZA65_RS11200	0.89	-0.8
2,374,091	-		DZA65_RS11200	0.89	-0.4
2,374,091	-		DZA65_RS11200	0.89	-0.6
2,374,091	-		DZA65_RS11200	0.89	+0.4
2,374,167	+				+0.1
2,374,256	+				-0.2
2,374,256	+				+0.4
2,374,295	-				+0.6
2,374,295	-				+1.3
2,374,295	-				-0.5
2,374,351	+				-1.6
2,374,351	+				+1.8
2,374,352	-				-0.7
2,374,352	-				-0.2
2,374,379	-				-0.2
2,374,497	+		DZA65_RS11210	0.29	-0.4
2,374,498	-		DZA65_RS11210	0.30	-2.2
2,374,498	-		DZA65_RS11210	0.30	+0.8
2,374,727	-				+0.2
2,374,771	+				-2.5
2,374,771	+				+0.0
2,374,772	-				+0.0
2,374,772	-				-0.2
2,374,804	+				+0.3
2,374,815	+				+0.1
2,374,815	+				-2.0
2,374,816	-				-0.1
2,374,824	+				-1.3
2,374,824	+				+0.1
2,374,824	+				-0.1
2,374,824	+				-0.6
2,374,824	+				-0.0
2,374,824	+				+0.6
2,374,824	+				+0.4
2,374,824	+				-0.4
2,374,824	+				-0.4
2,374,824	+				-0.0
2,374,824	+				+0.4
2,374,825	-				+0.9
2,374,825	-				-2.6
2,374,825	-				-1.2
2,374,825	-				-0.2
2,374,850	+				+1.0
2,374,858	-				+0.2
2,374,877	+				-0.3
2,374,877	+				-1.2
2,374,877	+				-0.9
2,374,906	+				+0.9
2,374,906	+				+0.4
2,374,906	+				+0.0
2,374,909	-				+0.2
2,374,925	+				+0.0
2,374,925	+				-0.8
2,374,926	-				+1.5
2,374,959	+				+1.2
2,374,959	+				-0.3
2,374,959	+				-0.2
2,374,960	-				-0.6
2,375,017	+				+1.4
2,375,017	+		DZA65_RS11215	0.11	-0.4
2,375,017	+		DZA65_RS11215	0.11	-0.6
2,375,017	+		DZA65_RS11215	0.11	+0.5
2,375,018	-		DZA65_RS11215	0.11	+0.8
2,375,092	-		DZA65_RS11215	0.15	+0.0
2,375,119	-		DZA65_RS11215	0.16	-1.6
2,375,148	+		DZA65_RS11215	0.18	+0.5
2,375,148	+		DZA65_RS11215	0.18	-1.5
2,375,148	+		DZA65_RS11215	0.18	+0.1
2,375,149	-		DZA65_RS11215	0.18	-0.9
2,375,149	-		DZA65_RS11215	0.18	-1.0
2,375,152	+		DZA65_RS11215	0.18	+0.6