Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS10475

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
2,222,768	+		DZA65_RS10465	0.62	+0.0
2,222,768	+		DZA65_RS10465	0.62	+0.1
2,222,768	+		DZA65_RS10465	0.62	-1.1
2,222,769	-		DZA65_RS10465	0.63	+0.0
2,222,782	-		DZA65_RS10465	0.64	-0.9
2,222,782	-		DZA65_RS10465	0.64	-1.0
2,222,782	-		DZA65_RS10465	0.64	+0.5
2,222,802	+		DZA65_RS10465	0.67	-0.1
2,222,802	+		DZA65_RS10465	0.67	-0.7
2,222,802	+		DZA65_RS10465	0.67	+0.0
2,222,802	+		DZA65_RS10465	0.67	-0.2
2,222,803	-		DZA65_RS10465	0.67	+0.4
2,222,805	+		DZA65_RS10465	0.67	+0.6
2,222,805	+		DZA65_RS10465	0.67	+0.3
2,222,805	+		DZA65_RS10465	0.67	-2.9
2,222,806	-		DZA65_RS10465	0.67	+0.5
2,222,806	-		DZA65_RS10465	0.67	+1.5
2,222,806	-		DZA65_RS10465	0.67	-0.1
2,222,806	-		DZA65_RS10465	0.67	-0.5
2,222,806	-		DZA65_RS10465	0.67	-0.5
2,222,809	-		DZA65_RS10465	0.68	-1.5
2,222,863	-		DZA65_RS10465	0.75	+0.2
2,222,971	+		DZA65_RS10465	0.89	+0.7
2,222,972	-		DZA65_RS10465	0.89	-1.4
2,222,972	-		DZA65_RS10465	0.89	-1.0
2,222,972	-		DZA65_RS10465	0.89	+0.0
2,222,994	-				-0.7
2,223,053	-				+0.0
2,223,123	+				+0.6
2,223,124	-				-0.1
2,223,140	-				-1.0
2,223,182	+				+0.9
2,223,199	+				-1.8
2,223,199	+				+0.2
2,223,199	+				-1.8
2,223,199	+				+0.7
2,223,199	+				-1.0
2,223,199	+				-0.2
2,223,199	+				-0.1
2,223,200	-				-0.3
2,223,200	-				-0.4
2,223,200	-				+0.5
2,223,207	+				-1.7
2,223,208	-				-0.5
2,223,208	-				+1.4
2,223,208	-				-1.3
2,223,224	-				+0.8
2,223,244	-				-0.5
2,223,248	+				-0.2
2,223,248	+				-0.6
2,223,248	+				-1.0
2,223,248	+				-0.3
2,223,248	+				-0.3
2,223,248	+				-1.5
2,223,249	-				-0.3
2,223,249	-				-1.5
2,223,341	-				+0.0
2,223,380	-		DZA65_RS10470	0.13	-0.1
2,223,380	-		DZA65_RS10470	0.13	-0.4
2,223,476	+		DZA65_RS10470	0.45	-0.3
2,223,476	+		DZA65_RS10470	0.45	+0.2
2,223,476	+		DZA65_RS10470	0.45	+0.7
2,223,477	-		DZA65_RS10470	0.46	-0.1
2,223,477	-		DZA65_RS10470	0.46	+0.2
2,223,477	-		DZA65_RS10470	0.46	+0.3
2,223,477	-		DZA65_RS10470	0.46	-0.1
2,223,477	-		DZA65_RS10470	0.46	-1.8
2,223,477	-		DZA65_RS10470	0.46	+0.5
2,223,477	-		DZA65_RS10470	0.46	-0.5
2,223,583	+		DZA65_RS10470	0.81	+0.3
2,223,584	-		DZA65_RS10470	0.82	-0.2
2,223,622	+				+0.2
2,223,622	+				+0.9
2,223,623	-				+0.0
2,223,646	-				+0.6
2,223,649	-				-0.0
2,223,889	+		DZA65_RS10475	0.16	-1.5
2,223,889	+		DZA65_RS10475	0.16	-1.4
2,223,960	-		DZA65_RS10475	0.23	-0.8
2,224,109	+				+0.7
2,224,110	-		DZA65_RS10475	0.38	+0.0
2,224,110	-		DZA65_RS10475	0.38	-0.8
2,224,110	-		DZA65_RS10475	0.38	-0.3
2,224,110	-		DZA65_RS10475	0.38	-1.8
2,224,216	+				+1.3
2,224,576	-		DZA65_RS10475	0.86	+0.1
2,224,603	+		DZA65_RS10475	0.89	-1.1
2,224,604	-		DZA65_RS10475	0.89	-1.4
2,224,644	+				-0.3
2,224,644	+				+0.5
2,224,644	+				-0.2
2,224,644	+				-1.6
2,224,645	-				+0.0
2,224,647	+				-0.8
2,224,648	-				+0.7
2,224,648	-				+0.0
2,224,686	-				-1.1
2,224,748	+				-1.0
2,224,749	-				-0.5
2,224,749	-				-0.8
2,225,007	+		DZA65_RS10480	0.41	+1.5
2,225,007	+		DZA65_RS10480	0.41	+0.0
2,225,007	+		DZA65_RS10480	0.41	-2.3
2,225,008	-		DZA65_RS10480	0.41	+1.8
2,225,082	-		DZA65_RS10480	0.51	-0.4
2,225,267	-		DZA65_RS10480	0.76	-0.3
2,225,306	+		DZA65_RS10480	0.81	+1.6
2,225,307	-		DZA65_RS10480	0.81	+0.0
2,225,321	+		DZA65_RS10480	0.83	-1.1
2,225,322	-		DZA65_RS10480	0.83	-0.5
2,225,322	-		DZA65_RS10480	0.83	+0.5
2,225,432	+				-0.3
2,225,447	+				+0.6
2,225,448	-				-0.4
2,225,448	-				-1.3
2,225,448	-				+0.0
2,225,448	-				-1.3
2,225,448	-				-0.8
2,225,463	+				+0.5
2,225,463	+				+0.1
2,225,463	+				-1.9
2,225,463	+				+0.4
2,225,463	+				-0.8
2,225,464	-				-1.4
2,225,488	+				-0.2
2,225,489	-				+0.7
2,225,513	-				+0.9
2,225,549	+				+0.3
2,225,558	+				-0.3
2,225,572	-				+0.0
2,225,581	+				-0.7
2,225,585	+				-0.2
2,225,604	+				+2.0
2,225,605	-				-1.0
2,225,607	+				+0.5
2,225,607	+				-0.8
2,225,608	-				+0.0
2,225,608	-				-0.8
2,225,643	+		DZA65_RS10485	0.18	+0.7
2,225,643	+		DZA65_RS10485	0.18	+0.3
2,225,643	+				+0.5
2,225,643	+		DZA65_RS10485	0.18	+0.6
2,225,644	-		DZA65_RS10485	0.19	-1.1
2,225,644	-		DZA65_RS10485	0.19	-1.3
2,225,644	-		DZA65_RS10485	0.19	+0.3
2,225,644	-		DZA65_RS10485	0.19	+0.6
2,225,644	-		DZA65_RS10485	0.19	+1.3
2,225,644	-		DZA65_RS10485	0.19	+0.0
2,225,648	-		DZA65_RS10485	0.20	+1.0
2,225,697	+		DZA65_RS10485	0.32	-0.7
2,225,698	-		DZA65_RS10485	0.32	-0.3
2,225,701	-				+0.6
2,225,701	-		DZA65_RS10485	0.33	-1.8