Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS09870

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
2,080,779	+		DZA65_RS09865	0.57	-0.3
2,080,779	+		DZA65_RS09865	0.57	+2.0
2,080,779	+		DZA65_RS09865	0.57	-0.5
2,080,779	+		DZA65_RS09865	0.57	-1.3
2,080,779	+		DZA65_RS09865	0.57	-0.3
2,080,780	-		DZA65_RS09865	0.57	+0.7
2,080,780	-		DZA65_RS09865	0.57	+0.0
2,080,780	-		DZA65_RS09865	0.57	+0.7
2,080,780	-		DZA65_RS09865	0.57	-0.7
2,080,780	-		DZA65_RS09865	0.57	-0.7
2,080,780	-		DZA65_RS09865	0.57	+0.6
2,080,928	+		DZA65_RS09865	0.66	+0.8
2,080,928	+		DZA65_RS09865	0.66	-2.0
2,080,929	-		DZA65_RS09865	0.66	+0.0
2,080,939	+		DZA65_RS09865	0.67	-0.8
2,080,939	+		DZA65_RS09865	0.67	+1.5
2,080,940	-		DZA65_RS09865	0.67	-0.7
2,080,948	+		DZA65_RS09865	0.67	+0.7
2,080,948	+		DZA65_RS09865	0.67	+2.0
2,080,948	+		DZA65_RS09865	0.67	+0.3
2,080,948	+		DZA65_RS09865	0.67	+0.3
2,080,948	+		DZA65_RS09865	0.67	+0.2
2,080,948	+		DZA65_RS09865	0.67	-0.7
2,080,949	-		DZA65_RS09865	0.67	-0.5
2,080,950	+		DZA65_RS09865	0.68	-1.1
2,080,950	+		DZA65_RS09865	0.68	-0.2
2,080,950	+		DZA65_RS09865	0.68	-0.7
2,080,951	-		DZA65_RS09865	0.68	-0.6
2,080,951	-		DZA65_RS09865	0.68	-1.0
2,080,951	-		DZA65_RS09865	0.68	-0.9
2,080,991	+		DZA65_RS09865	0.70	-0.2
2,080,991	+		DZA65_RS09865	0.70	-0.9
2,080,991	+		DZA65_RS09865	0.70	-0.2
2,080,991	+		DZA65_RS09865	0.70	-1.0
2,080,991	+		DZA65_RS09865	0.70	-0.1
2,080,992	-		DZA65_RS09865	0.70	+1.8
2,080,992	-		DZA65_RS09865	0.70	-0.5
2,080,992	-		DZA65_RS09865	0.70	-1.3
2,080,992	-		DZA65_RS09865	0.70	+1.0
2,080,993	+		DZA65_RS09865	0.70	+0.6
2,080,993	+		DZA65_RS09865	0.70	+0.5
2,080,993	+		DZA65_RS09865	0.70	-1.3
2,080,993	+		DZA65_RS09865	0.70	-0.4
2,080,993	+		DZA65_RS09865	0.70	-0.3
2,080,994	-		DZA65_RS09865	0.70	-1.4
2,080,994	-		DZA65_RS09865	0.70	-1.5
2,080,994	-		DZA65_RS09865	0.70	-1.0
2,080,994	-		DZA65_RS09865	0.70	-1.3
2,080,994	-		DZA65_RS09865	0.70	+1.6
2,080,994	-		DZA65_RS09865	0.70	-0.6
2,081,018	-				-1.5
2,081,018	-		DZA65_RS09865	0.72	-0.1
2,081,030	+		DZA65_RS09865	0.72	+0.7
2,081,030	+		DZA65_RS09865	0.72	+0.0
2,081,030	+		DZA65_RS09865	0.72	-0.9
2,081,030	+		DZA65_RS09865	0.72	-0.4
2,081,031	-		DZA65_RS09865	0.72	-0.3
2,081,031	-		DZA65_RS09865	0.72	-1.0
2,081,066	+		DZA65_RS09865	0.75	+0.1
2,081,073	-		DZA65_RS09865	0.75	-0.5
2,081,073	-		DZA65_RS09865	0.75	-0.4
2,081,256	-		DZA65_RS09865	0.86	-1.8
2,081,364	+				-0.6
2,081,365	-				+1.0
2,081,428	+				-0.4
2,081,482	+				+1.6
2,081,482	+				-1.8
2,081,482	+				-0.7
2,081,482	+				+0.9
2,081,482	+				-0.4
2,081,482	+				+0.4
2,081,482	+				-1.3
2,081,482	+				+0.6
2,081,482	+				+0.3
2,081,483	-				-0.2
2,081,483	-				+0.8
2,081,483	-				-0.3
2,081,483	-				-0.1
2,081,483	-				-1.3
2,081,483	-				-0.1
2,081,483	-				+0.0
2,081,483	-				+0.5
2,081,483	-				+0.5
2,081,483	-				+0.0
2,081,483	-				-1.0
2,081,486	+				-0.9
2,081,487	-				-0.4
2,081,487	-				+0.0
2,081,487	-				-1.1
2,081,535	+				-0.3
2,081,535	+				-1.5
2,081,535	+				+0.1
2,081,536	-				+1.0
2,081,536	-				-1.0
2,081,555	+				+0.2
2,081,556	-				+0.7
2,081,556	-				-1.3
2,081,556	-				-0.0
2,081,556	-				-0.1
2,081,569	-				+0.8
2,081,569	-				-0.6
2,081,570	+				-0.3
2,081,641	+				-0.6
2,081,642	-				+0.8
2,081,647	+				-0.5
2,081,674	+				-0.3
2,081,674	+				-0.1
2,081,675	-				-1.8
2,081,744	-				-0.3
2,081,744	-				+1.6
2,082,165	+		DZA65_RS09870	0.26	+0.8
2,082,398	-		DZA65_RS09870	0.40	-0.8
2,082,486	+		DZA65_RS09870	0.45	+0.0
2,082,535	-		DZA65_RS09870	0.48	-1.0
2,082,783	+		DZA65_RS09870	0.63	-0.9
2,082,787	+		DZA65_RS09870	0.63	-1.1
2,082,788	-		DZA65_RS09870	0.63	+0.5
2,082,788	-		DZA65_RS09870	0.63	-0.5
2,082,822	+		DZA65_RS09870	0.65	-2.2
2,082,822	+		DZA65_RS09870	0.65	+0.4
2,082,823	-		DZA65_RS09870	0.65	-0.7
2,082,823	-		DZA65_RS09870	0.65	-0.4
2,082,834	+		DZA65_RS09870	0.66	-1.3
2,082,834	+		DZA65_RS09870	0.66	+0.0
2,082,834	+		DZA65_RS09870	0.66	-0.3
2,082,835	-		DZA65_RS09870	0.66	-1.0
2,082,869	+		DZA65_RS09870	0.68	-0.1
2,082,870	-		DZA65_RS09870	0.68	+0.5
2,083,079	-		DZA65_RS09870	0.81	-0.3
2,083,079	-		DZA65_RS09870	0.81	+0.0
2,083,170	+		DZA65_RS09870	0.86	-0.4
2,083,170	+		DZA65_RS09870	0.86	-0.4
2,083,170	+		DZA65_RS09870	0.86	-1.9
2,083,170	+		DZA65_RS09870	0.86	-0.7
2,083,170	+		DZA65_RS09870	0.86	-0.3
2,083,170	+		DZA65_RS09870	0.86	-1.8
2,083,171	-		DZA65_RS09870	0.86	+0.2
2,083,171	-		DZA65_RS09870	0.86	-0.8
2,083,171	-		DZA65_RS09870	0.86	+0.2
2,083,171	-		DZA65_RS09870	0.86	-0.3
2,083,171	-		DZA65_RS09870	0.86	-0.6
2,083,171	-		DZA65_RS09870	0.86	-0.6
2,083,171	-		DZA65_RS09870	0.86	-1.3
2,083,171	-		DZA65_RS09870	0.86	+0.5
2,083,171	-		DZA65_RS09870	0.86	-1.0
2,083,174	+		DZA65_RS09870	0.87	+0.5
2,083,175	-		DZA65_RS09870	0.87	-0.8
2,083,188	+		DZA65_RS09870	0.87	+0.3
2,083,188	+		DZA65_RS09870	0.87	+0.3
2,083,189	-		DZA65_RS09870	0.88	-0.2
2,083,350	+				-0.7
2,083,351	-				-0.3
2,083,449	+				+0.7
2,083,551	-		DZA65_RS09875	0.30	+0.4
2,083,590	+		DZA65_RS09875	0.48	-0.7
2,083,614	+		DZA65_RS09875	0.59	-0.4
2,083,627	+		DZA65_RS09875	0.64	-0.9
2,083,627	+		DZA65_RS09875	0.64	-0.5
2,083,627	+		DZA65_RS09875	0.64	-0.3
2,083,628	-		DZA65_RS09875	0.65	-2.1
2,083,654	+		DZA65_RS09875	0.77	+0.5
2,083,654	+		DZA65_RS09875	0.77	-0.6
2,083,655	-		DZA65_RS09875	0.77	+0.3
2,083,655	-		DZA65_RS09875	0.77	+0.4
2,083,687	+				+0.3
2,083,688	-				+1.8
2,083,688	-				+0.2
2,083,688	-				-0.3
2,083,688	-				+0.5
2,083,693	+				-0.8
2,083,693	+				+0.3
2,083,693	+				+0.8
2,083,705	+				+1.2
2,083,705	+				+1.7
2,083,706	-				-0.7
2,083,706	-				+0.6
2,083,706	-				-2.0
2,083,706	-				-0.6
2,083,706	-				-0.1
2,083,706	-				-2.1
2,083,706	-				-0.5
2,083,706	-				-0.1
2,083,706	-				-0.9
2,083,706	-				-0.5
2,083,706	-				-0.4
2,083,706	-				+0.6
2,083,706	-				-2.0
2,083,706	-				-0.3
2,083,706	-				+0.1
2,083,706	-				-0.1
2,083,706	-				-0.2
2,083,735	+				+1.5
2,083,736	-				-0.5
2,083,736	-				+0.5
2,083,796	+				+1.8
2,083,796	+				-0.4
2,083,796	+				+0.6
2,083,796	+				-1.3
2,083,797	-				-1.7
2,083,797	-				+0.4
2,083,797	-				-0.5
2,083,876	+				+0.4
2,083,877	-				+0.8
2,083,895	+				-0.3
2,083,908	-				+0.6
2,083,958	+				+0.6
2,083,958	+				+0.6
2,083,958	+				-1.7
2,083,959	-				+0.4
2,083,963	+				-0.5
2,083,963	+				+0.8
2,083,964	-				-0.2
2,084,001	+				-2.5
2,084,001	+				+0.0
2,084,002	-				+0.3
2,084,002	-				-0.2
2,084,006	-				-0.5
2,084,006	-				+1.2
2,084,006	-				-0.1
2,084,006	-				-0.3
2,084,023	+				+0.8
2,084,024	-				-0.2
2,084,040	+				+0.2
2,084,040	+				+0.2
2,084,041	-				+0.5
2,084,041	-				-0.9
2,084,041	-				+0.0
2,084,044	-				-0.4
2,084,071	-		DZA65_RS09880	0.13	+0.4
2,084,071	-		DZA65_RS09880	0.13	-1.3
2,084,081	-		DZA65_RS09880	0.16	-0.5
2,084,110	+		DZA65_RS09880	0.25	-0.4
2,084,110	+		DZA65_RS09880	0.25	-0.5
2,084,110	+		DZA65_RS09880	0.25	+0.6
2,084,111	-		DZA65_RS09880	0.26	-0.3
2,084,112	+		DZA65_RS09880	0.26	-0.3
2,084,112	+		DZA65_RS09880	0.26	-0.3
2,084,120	+		DZA65_RS09880	0.28	-0.0
2,084,120	+		DZA65_RS09880	0.28	-0.2
2,084,120	+		DZA65_RS09880	0.28	+0.2
2,084,124	+		DZA65_RS09880	0.30	-0.7
2,084,125	-		DZA65_RS09880	0.30	+0.5
2,084,125	-		DZA65_RS09880	0.30	-0.3
2,084,125	-		DZA65_RS09880	0.30	+2.0
2,084,138	-		DZA65_RS09880	0.34	-0.7
2,084,138	-		DZA65_RS09880	0.34	+0.3
2,084,138	-		DZA65_RS09880	0.34	+0.2
2,084,138	-		DZA65_RS09880	0.34	-0.5
2,084,138	-		DZA65_RS09880	0.34	-0.4
2,084,157	+		DZA65_RS09880	0.40	+0.3
2,084,185	+		DZA65_RS09880	0.49	-0.8
2,084,186	-				+2.6
2,084,186	-		DZA65_RS09880	0.49	+0.0
2,084,190	+		DZA65_RS09880	0.50	-0.3
2,084,191	-		DZA65_RS09880	0.50	+0.5
2,084,217	+		DZA65_RS09880	0.59	+0.9
2,084,218	-		DZA65_RS09880	0.59	-0.5
2,084,353	-				-0.1
2,084,353	-				+0.6
2,084,353	-				-0.1
2,084,357	+				+0.3
2,084,363	-				-0.0
2,084,363	-				+0.1
2,084,379	-				+1.4
2,084,379	-				-1.0