Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS08300

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS08295 and DZA65_RS08300 are separated by 64 nucleotidesDZA65_RS08300 and DZA65_RS08305 overlap by 14 nucleotides DZA65_RS08295: DZA65_RS08295 - Tat pathway signal sequence domain protein, at 1,746,974 to 1,749,754 _RS08295 DZA65_RS08300: DZA65_RS08300 - hypothetical protein, at 1,749,819 to 1,750,517 _RS08300 DZA65_RS08305: DZA65_RS08305 - LysR family transcriptional regulator, at 1,750,504 to 1,751,445 _RS08305 Position (kb) 1749 1750 1751Strain fitness (log2 ratio) -2 -1 0 1at 1748.939 kb on + strand, within DZA65_RS08295at 1748.940 kb on - strand, within DZA65_RS08295at 1748.942 kb on + strand, within DZA65_RS08295at 1748.942 kb on + strand, within DZA65_RS08295at 1748.943 kb on - strand, within DZA65_RS08295at 1748.943 kb on - strandat 1748.943 kb on - strand, within DZA65_RS08295at 1748.989 kb on - strand, within DZA65_RS08295at 1749.006 kb on + strand, within DZA65_RS08295at 1749.007 kb on - strand, within DZA65_RS08295at 1749.007 kb on - strand, within DZA65_RS08295at 1749.007 kb on - strand, within DZA65_RS08295at 1749.074 kb on + strand, within DZA65_RS08295at 1749.075 kb on - strand, within DZA65_RS08295at 1749.159 kb on + strand, within DZA65_RS08295at 1749.166 kb on + strand, within DZA65_RS08295at 1749.166 kb on + strand, within DZA65_RS08295at 1749.166 kb on + strand, within DZA65_RS08295at 1749.167 kb on - strand, within DZA65_RS08295at 1749.167 kb on - strand, within DZA65_RS08295at 1749.167 kb on - strand, within DZA65_RS08295at 1749.167 kb on - strand, within DZA65_RS08295at 1749.167 kb on - strand, within DZA65_RS08295at 1749.167 kb on - strand, within DZA65_RS08295at 1749.167 kb on - strand, within DZA65_RS08295at 1749.241 kb on - strand, within DZA65_RS08295at 1749.241 kb on - strand, within DZA65_RS08295at 1749.271 kb on + strand, within DZA65_RS08295at 1749.271 kb on + strand, within DZA65_RS08295at 1749.271 kb on + strand, within DZA65_RS08295at 1749.272 kb on - strand, within DZA65_RS08295at 1749.272 kb on - strand, within DZA65_RS08295at 1749.368 kb on + strand, within DZA65_RS08295at 1749.368 kb on + strand, within DZA65_RS08295at 1749.368 kb on + strand, within DZA65_RS08295at 1749.368 kb on + strand, within DZA65_RS08295at 1749.369 kb on - strand, within DZA65_RS08295at 1749.369 kb on - strand, within DZA65_RS08295at 1749.369 kb on - strandat 1749.369 kb on - strand, within DZA65_RS08295at 1749.369 kb on - strand, within DZA65_RS08295at 1749.369 kb on - strand, within DZA65_RS08295at 1749.380 kb on + strand, within DZA65_RS08295at 1749.381 kb on - strand, within DZA65_RS08295at 1749.381 kb on - strand, within DZA65_RS08295at 1749.381 kb on - strand, within DZA65_RS08295at 1749.381 kb on - strand, within DZA65_RS08295at 1749.381 kb on - strand, within DZA65_RS08295at 1749.615 kb on + strandat 1749.615 kb on + strandat 1749.616 kb on - strandat 1749.616 kb on - strandat 1749.616 kb on - strandat 1749.616 kb on - strandat 1749.616 kb on - strandat 1749.616 kb on - strandat 1749.707 kb on - strandat 1749.771 kb on + strandat 1749.771 kb on + strandat 1749.772 kb on - strandat 1749.772 kb on - strandat 1749.772 kb on - strandat 1749.834 kb on + strandat 1749.834 kb on + strandat 1749.835 kb on - strandat 1749.835 kb on - strandat 1749.836 kb on + strandat 1749.837 kb on - strandat 1750.070 kb on + strand, within DZA65_RS08300at 1750.074 kb on + strand, within DZA65_RS08300at 1750.074 kb on + strand, within DZA65_RS08300at 1750.074 kb on + strand, within DZA65_RS08300at 1750.074 kb on + strand, within DZA65_RS08300at 1750.075 kb on - strand, within DZA65_RS08300at 1750.075 kb on - strand, within DZA65_RS08300at 1750.075 kb on - strand, within DZA65_RS08300at 1750.075 kb on - strand, within DZA65_RS08300at 1750.086 kb on + strand, within DZA65_RS08300at 1750.087 kb on - strand, within DZA65_RS08300at 1750.087 kb on - strand, within DZA65_RS08300at 1750.087 kb on - strand, within DZA65_RS08300at 1750.087 kb on - strand, within DZA65_RS08300at 1750.087 kb on - strand, within DZA65_RS08300at 1750.139 kb on + strand, within DZA65_RS08300at 1750.139 kb on + strand, within DZA65_RS08300at 1750.139 kb on + strand, within DZA65_RS08300at 1750.140 kb on - strand, within DZA65_RS08300at 1750.140 kb on - strand, within DZA65_RS08300at 1750.209 kb on + strand, within DZA65_RS08300at 1750.227 kb on + strand, within DZA65_RS08300at 1750.227 kb on + strand, within DZA65_RS08300at 1750.227 kb on + strand, within DZA65_RS08300at 1750.227 kb on + strand, within DZA65_RS08300at 1750.227 kb on + strand, within DZA65_RS08300at 1750.228 kb on - strand, within DZA65_RS08300at 1750.228 kb on - strand, within DZA65_RS08300at 1750.228 kb on - strand, within DZA65_RS08300at 1750.228 kb on - strand, within DZA65_RS08300at 1750.230 kb on + strand, within DZA65_RS08300at 1750.230 kb on + strand, within DZA65_RS08300at 1750.230 kb on + strand, within DZA65_RS08300at 1750.231 kb on - strand, within DZA65_RS08300at 1750.231 kb on - strand, within DZA65_RS08300at 1750.231 kb on - strand, within DZA65_RS08300at 1750.231 kb on - strand, within DZA65_RS08300at 1750.231 kb on - strand, within DZA65_RS08300at 1750.231 kb on - strand, within DZA65_RS08300at 1750.231 kb on - strand, within DZA65_RS08300at 1750.231 kb on - strand, within DZA65_RS08300at 1750.278 kb on + strand, within DZA65_RS08300at 1750.278 kb on + strand, within DZA65_RS08300at 1750.278 kb on + strand, within DZA65_RS08300at 1750.278 kb on + strand, within DZA65_RS08300at 1750.279 kb on - strand, within DZA65_RS08300at 1750.279 kb on - strand, within DZA65_RS08300at 1750.279 kb on - strand, within DZA65_RS08300at 1750.413 kb on + strand, within DZA65_RS08300at 1750.413 kb on + strand, within DZA65_RS08300at 1750.413 kb on + strand, within DZA65_RS08300at 1750.413 kb on + strand, within DZA65_RS08300at 1750.414 kb on - strand, within DZA65_RS08300at 1750.414 kb on - strand, within DZA65_RS08300at 1750.414 kb on - strand, within DZA65_RS08300at 1750.414 kb on - strand, within DZA65_RS08300at 1750.452 kb on + strandat 1750.515 kb on + strandat 1750.515 kb on + strandat 1750.516 kb on - strandat 1750.516 kb on - strandat 1750.634 kb on + strand, within DZA65_RS08305at 1750.634 kb on + strandat 1750.635 kb on - strand, within DZA65_RS08305at 1750.871 kb on + strand, within DZA65_RS08305at 1750.872 kb on - strand, within DZA65_RS08305at 1750.879 kb on + strand, within DZA65_RS08305at 1750.879 kb on + strand, within DZA65_RS08305at 1750.880 kb on - strand, within DZA65_RS08305at 1750.880 kb on - strand, within DZA65_RS08305at 1750.880 kb on - strand, within DZA65_RS08305at 1750.880 kb on - strand, within DZA65_RS08305at 1750.880 kb on - strand, within DZA65_RS08305at 1750.880 kb on - strand, within DZA65_RS08305at 1750.973 kb on + strand, within DZA65_RS08305at 1750.974 kb on - strand, within DZA65_RS08305at 1751.013 kb on + strand, within DZA65_RS08305at 1751.013 kb on + strand, within DZA65_RS08305at 1751.020 kb on - strand, within DZA65_RS08305at 1751.020 kb on - strand, within DZA65_RS08305at 1751.094 kb on - strand, within DZA65_RS08305at 1751.412 kb on + strandat 1751.412 kb on + strandat 1751.412 kb on + strandat 1751.412 kb on + strandat 1751.413 kb on - strandat 1751.413 kb on - strandat 1751.422 kb on + strandat 1751.422 kb on + strandat 1751.423 kb on - strandat 1751.423 kb on - strandat 1751.423 kb on - strandat 1751.457 kb on + strandat 1751.457 kb on + strandat 1751.492 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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1,748,939 + DZA65_RS08295 0.71 -1.2
1,748,940 - DZA65_RS08295 0.71 -1.0
1,748,942 + DZA65_RS08295 0.71 +0.4
1,748,942 + DZA65_RS08295 0.71 +1.5
1,748,943 - DZA65_RS08295 0.71 +0.2
1,748,943 - +0.5
1,748,943 - DZA65_RS08295 0.71 -0.2
1,748,989 - DZA65_RS08295 0.72 +0.1
1,749,006 + DZA65_RS08295 0.73 +1.3
1,749,007 - DZA65_RS08295 0.73 -0.6
1,749,007 - DZA65_RS08295 0.73 -1.5
1,749,007 - DZA65_RS08295 0.73 +0.2
1,749,074 + DZA65_RS08295 0.76 -0.2
1,749,075 - DZA65_RS08295 0.76 -0.1
1,749,159 + DZA65_RS08295 0.79 +0.4
1,749,166 + DZA65_RS08295 0.79 -1.1
1,749,166 + DZA65_RS08295 0.79 -0.0
1,749,166 + DZA65_RS08295 0.79 -0.6
1,749,167 - DZA65_RS08295 0.79 +0.8
1,749,167 - DZA65_RS08295 0.79 +0.3
1,749,167 - DZA65_RS08295 0.79 +0.7
1,749,167 - DZA65_RS08295 0.79 -0.4
1,749,167 - DZA65_RS08295 0.79 +0.4
1,749,167 - DZA65_RS08295 0.79 -1.5
1,749,167 - DZA65_RS08295 0.79 -1.2
1,749,241 - DZA65_RS08295 0.82 -0.5
1,749,241 - DZA65_RS08295 0.82 -0.0
1,749,271 + DZA65_RS08295 0.83 +0.6
1,749,271 + DZA65_RS08295 0.83 +0.1
1,749,271 + DZA65_RS08295 0.83 -1.7
1,749,272 - DZA65_RS08295 0.83 +0.5
1,749,272 - DZA65_RS08295 0.83 +0.1
1,749,368 + DZA65_RS08295 0.86 +0.2
1,749,368 + DZA65_RS08295 0.86 +0.4
1,749,368 + DZA65_RS08295 0.86 -0.6
1,749,368 + DZA65_RS08295 0.86 +0.6
1,749,369 - DZA65_RS08295 0.86 -1.2
1,749,369 - DZA65_RS08295 0.86 -0.1
1,749,369 - +0.1
1,749,369 - DZA65_RS08295 0.86 +1.1
1,749,369 - DZA65_RS08295 0.86 -2.0
1,749,369 - DZA65_RS08295 0.86 +0.5
1,749,380 + DZA65_RS08295 0.87 +0.2
1,749,381 - DZA65_RS08295 0.87 -0.0
1,749,381 - DZA65_RS08295 0.87 -0.7
1,749,381 - DZA65_RS08295 0.87 -0.3
1,749,381 - DZA65_RS08295 0.87 -1.0
1,749,381 - DZA65_RS08295 0.87 -0.3
1,749,615 + -1.1
1,749,615 + -0.2
1,749,616 - +0.7
1,749,616 - +1.1
1,749,616 - +0.1
1,749,616 - +0.5
1,749,616 - -0.3
1,749,616 - -1.7
1,749,707 - -0.5
1,749,771 + -0.5
1,749,771 + -0.7
1,749,772 - -2.1
1,749,772 - +0.5
1,749,772 - -0.2
1,749,834 + +0.1
1,749,834 + +0.8
1,749,835 - -0.5
1,749,835 - -0.2
1,749,836 + -0.2
1,749,837 - +0.2
1,750,070 + DZA65_RS08300 0.36 -0.1
1,750,074 + DZA65_RS08300 0.36 +0.4
1,750,074 + DZA65_RS08300 0.36 +0.1
1,750,074 + DZA65_RS08300 0.36 +1.1
1,750,074 + DZA65_RS08300 0.36 +0.3
1,750,075 - DZA65_RS08300 0.37 -0.4
1,750,075 - DZA65_RS08300 0.37 -0.3
1,750,075 - DZA65_RS08300 0.37 -0.3
1,750,075 - DZA65_RS08300 0.37 -1.7
1,750,086 + DZA65_RS08300 0.38 -2.1
1,750,087 - DZA65_RS08300 0.38 -2.0
1,750,087 - DZA65_RS08300 0.38 -0.2
1,750,087 - DZA65_RS08300 0.38 +1.3
1,750,087 - DZA65_RS08300 0.38 -1.8
1,750,087 - DZA65_RS08300 0.38 -0.7
1,750,139 + DZA65_RS08300 0.46 -0.3
1,750,139 + DZA65_RS08300 0.46 -0.9
1,750,139 + DZA65_RS08300 0.46 +0.8
1,750,140 - DZA65_RS08300 0.46 -0.2
1,750,140 - DZA65_RS08300 0.46 -0.1
1,750,209 + DZA65_RS08300 0.56 -0.7
1,750,227 + DZA65_RS08300 0.58 -1.6
1,750,227 + DZA65_RS08300 0.58 -1.1
1,750,227 + DZA65_RS08300 0.58 -0.2
1,750,227 + DZA65_RS08300 0.58 -0.5
1,750,227 + DZA65_RS08300 0.58 +0.4
1,750,228 - DZA65_RS08300 0.59 -2.7
1,750,228 - DZA65_RS08300 0.59 +0.6
1,750,228 - DZA65_RS08300 0.59 -0.3
1,750,228 - DZA65_RS08300 0.59 -0.8
1,750,230 + DZA65_RS08300 0.59 -0.9
1,750,230 + DZA65_RS08300 0.59 -0.5
1,750,230 + DZA65_RS08300 0.59 -0.3
1,750,231 - DZA65_RS08300 0.59 -0.9
1,750,231 - DZA65_RS08300 0.59 -0.5
1,750,231 - DZA65_RS08300 0.59 -1.2
1,750,231 - DZA65_RS08300 0.59 +0.4
1,750,231 - DZA65_RS08300 0.59 +0.5
1,750,231 - DZA65_RS08300 0.59 -1.2
1,750,231 - DZA65_RS08300 0.59 +1.1
1,750,231 - DZA65_RS08300 0.59 +0.9
1,750,278 + DZA65_RS08300 0.66 -1.5
1,750,278 + DZA65_RS08300 0.66 +0.7
1,750,278 + DZA65_RS08300 0.66 -0.8
1,750,278 + DZA65_RS08300 0.66 +0.8
1,750,279 - DZA65_RS08300 0.66 -1.2
1,750,279 - DZA65_RS08300 0.66 -0.2
1,750,279 - DZA65_RS08300 0.66 -0.1
1,750,413 + DZA65_RS08300 0.85 -0.3
1,750,413 + DZA65_RS08300 0.85 +0.5
1,750,413 + DZA65_RS08300 0.85 -1.1
1,750,413 + DZA65_RS08300 0.85 +0.3
1,750,414 - DZA65_RS08300 0.85 -1.5
1,750,414 - DZA65_RS08300 0.85 +0.8
1,750,414 - DZA65_RS08300 0.85 -0.2
1,750,414 - DZA65_RS08300 0.85 +0.2
1,750,452 + +0.8
1,750,515 + -0.2
1,750,515 + -0.2
1,750,516 - +0.3
1,750,516 - -0.9
1,750,634 + DZA65_RS08305 0.14 -0.2
1,750,634 + +1.1
1,750,635 - DZA65_RS08305 0.14 +0.1
1,750,871 + DZA65_RS08305 0.39 -0.6
1,750,872 - DZA65_RS08305 0.39 -1.2
1,750,879 + DZA65_RS08305 0.40 +0.7
1,750,879 + DZA65_RS08305 0.40 -0.5
1,750,880 - DZA65_RS08305 0.40 -0.2
1,750,880 - DZA65_RS08305 0.40 +0.1
1,750,880 - DZA65_RS08305 0.40 +0.8
1,750,880 - DZA65_RS08305 0.40 +0.1
1,750,880 - DZA65_RS08305 0.40 +0.3
1,750,880 - DZA65_RS08305 0.40 +0.0
1,750,973 + DZA65_RS08305 0.50 +0.2
1,750,974 - DZA65_RS08305 0.50 -0.4
1,751,013 + DZA65_RS08305 0.54 +0.1
1,751,013 + DZA65_RS08305 0.54 -0.6
1,751,020 - DZA65_RS08305 0.55 -1.0
1,751,020 - DZA65_RS08305 0.55 -0.6
1,751,094 - DZA65_RS08305 0.63 +0.1
1,751,412 + +0.6
1,751,412 + -0.2
1,751,412 + -0.1
1,751,412 + +0.4
1,751,413 - -0.1
1,751,413 - -0.7
1,751,422 + -0.9
1,751,422 + +0.4
1,751,423 - +0.1
1,751,423 - -0.6
1,751,423 - -2.6
1,751,457 + -0.2
1,751,457 + +0.5
1,751,492 + +1.7

Or see this region's nucleotide sequence