Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS07245

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS07240 and DZA65_RS07245 overlap by 4 nucleotidesDZA65_RS07245 and DZA65_RS07250 overlap by 4 nucleotides DZA65_RS07240: DZA65_RS07240 - ABC transporter permease, at 1,505,100 to 1,506,038 _RS07240 DZA65_RS07245: DZA65_RS07245 - ABC transporter permease, at 1,506,035 to 1,506,889 _RS07245 DZA65_RS07250: DZA65_RS07250 - ABC transporter ATP-binding protein, at 1,506,886 to 1,507,905 _RS07250 Position (kb) 1506 1507Strain fitness (log2 ratio) -2 -1 0 1at 1505.096 kb on + strandat 1505.096 kb on + strandat 1505.096 kb on + strandat 1505.096 kb on + strandat 1505.096 kb on + strandat 1505.096 kb on + strandat 1505.097 kb on - strandat 1505.097 kb on - strandat 1505.097 kb on - strandat 1505.119 kb on + strandat 1505.298 kb on + strand, within DZA65_RS07240at 1505.298 kb on + strand, within DZA65_RS07240at 1505.298 kb on + strand, within DZA65_RS07240at 1505.299 kb on - strand, within DZA65_RS07240at 1505.299 kb on - strand, within DZA65_RS07240at 1505.299 kb on - strand, within DZA65_RS07240at 1505.345 kb on + strand, within DZA65_RS07240at 1505.345 kb on + strand, within DZA65_RS07240at 1505.345 kb on + strand, within DZA65_RS07240at 1505.352 kb on + strand, within DZA65_RS07240at 1505.353 kb on - strand, within DZA65_RS07240at 1505.353 kb on - strand, within DZA65_RS07240at 1505.360 kb on - strand, within DZA65_RS07240at 1505.360 kb on - strand, within DZA65_RS07240at 1505.360 kb on - strand, within DZA65_RS07240at 1505.360 kb on - strand, within DZA65_RS07240at 1505.360 kb on - strand, within DZA65_RS07240at 1505.498 kb on + strand, within DZA65_RS07240at 1505.499 kb on - strandat 1505.499 kb on - strand, within DZA65_RS07240at 1505.730 kb on + strand, within DZA65_RS07240at 1505.730 kb on + strand, within DZA65_RS07240at 1505.730 kb on + strand, within DZA65_RS07240at 1505.730 kb on + strand, within DZA65_RS07240at 1505.730 kb on + strand, within DZA65_RS07240at 1505.731 kb on - strand, within DZA65_RS07240at 1505.731 kb on - strand, within DZA65_RS07240at 1505.731 kb on - strand, within DZA65_RS07240at 1505.731 kb on - strand, within DZA65_RS07240at 1505.731 kb on - strand, within DZA65_RS07240at 1505.731 kb on - strand, within DZA65_RS07240at 1505.731 kb on - strand, within DZA65_RS07240at 1505.816 kb on + strand, within DZA65_RS07240at 1505.817 kb on - strand, within DZA65_RS07240at 1505.931 kb on + strand, within DZA65_RS07240at 1505.931 kb on + strand, within DZA65_RS07240at 1505.932 kb on - strand, within DZA65_RS07240at 1506.034 kb on + strandat 1506.035 kb on - strandat 1506.244 kb on + strand, within DZA65_RS07245at 1506.244 kb on + strand, within DZA65_RS07245at 1506.245 kb on - strand, within DZA65_RS07245at 1506.248 kb on + strand, within DZA65_RS07245at 1506.248 kb on + strand, within DZA65_RS07245at 1506.248 kb on + strand, within DZA65_RS07245at 1506.249 kb on - strand, within DZA65_RS07245at 1506.249 kb on - strand, within DZA65_RS07245at 1506.249 kb on - strand, within DZA65_RS07245at 1506.273 kb on + strand, within DZA65_RS07245at 1506.274 kb on - strand, within DZA65_RS07245at 1506.365 kb on + strand, within DZA65_RS07245at 1506.448 kb on + strand, within DZA65_RS07245at 1506.448 kb on + strand, within DZA65_RS07245at 1506.448 kb on + strand, within DZA65_RS07245at 1506.448 kb on + strand, within DZA65_RS07245at 1506.449 kb on - strand, within DZA65_RS07245at 1506.449 kb on - strand, within DZA65_RS07245at 1506.452 kb on - strand, within DZA65_RS07245at 1506.452 kb on - strand, within DZA65_RS07245at 1506.485 kb on + strand, within DZA65_RS07245at 1506.485 kb on + strand, within DZA65_RS07245at 1506.485 kb on + strand, within DZA65_RS07245at 1506.486 kb on - strand, within DZA65_RS07245at 1506.486 kb on - strand, within DZA65_RS07245at 1506.486 kb on - strand, within DZA65_RS07245at 1506.518 kb on + strand, within DZA65_RS07245at 1506.566 kb on + strand, within DZA65_RS07245at 1506.566 kb on + strand, within DZA65_RS07245at 1506.567 kb on - strand, within DZA65_RS07245at 1506.567 kb on - strand, within DZA65_RS07245at 1506.567 kb on - strand, within DZA65_RS07245at 1506.567 kb on - strand, within DZA65_RS07245at 1506.567 kb on - strand, within DZA65_RS07245at 1506.707 kb on + strand, within DZA65_RS07245at 1506.707 kb on + strand, within DZA65_RS07245at 1506.708 kb on - strand, within DZA65_RS07245at 1506.708 kb on - strand, within DZA65_RS07245at 1506.751 kb on - strand, within DZA65_RS07245at 1506.779 kb on - strand, within DZA65_RS07245at 1506.822 kb on + strandat 1506.822 kb on + strandat 1506.823 kb on - strandat 1506.823 kb on - strandat 1506.894 kb on - strandat 1506.902 kb on + strandat 1506.903 kb on - strandat 1506.920 kb on + strandat 1506.920 kb on + strandat 1506.920 kb on + strandat 1506.920 kb on + strandat 1506.920 kb on + strandat 1506.921 kb on - strandat 1506.921 kb on - strandat 1506.938 kb on + strandat 1506.939 kb on - strandat 1507.173 kb on - strand, within DZA65_RS07250at 1507.173 kb on - strand, within DZA65_RS07250at 1507.173 kb on - strand, within DZA65_RS07250at 1507.173 kb on - strand, within DZA65_RS07250at 1507.221 kb on + strand, within DZA65_RS07250at 1507.222 kb on - strand, within DZA65_RS07250at 1507.364 kb on - strand, within DZA65_RS07250at 1507.562 kb on + strand, within DZA65_RS07250at 1507.597 kb on + strand, within DZA65_RS07250at 1507.597 kb on + strandat 1507.597 kb on + strand, within DZA65_RS07250at 1507.597 kb on + strand, within DZA65_RS07250at 1507.597 kb on + strand, within DZA65_RS07250at 1507.597 kb on + strand, within DZA65_RS07250at 1507.598 kb on - strand, within DZA65_RS07250at 1507.598 kb on - strand, within DZA65_RS07250at 1507.598 kb on - strand, within DZA65_RS07250at 1507.598 kb on - strand, within DZA65_RS07250at 1507.598 kb on - strand, within DZA65_RS07250at 1507.660 kb on + strand, within DZA65_RS07250at 1507.660 kb on + strand, within DZA65_RS07250at 1507.660 kb on + strand, within DZA65_RS07250at 1507.660 kb on + strand, within DZA65_RS07250at 1507.662 kb on + strand, within DZA65_RS07250at 1507.662 kb on + strand, within DZA65_RS07250at 1507.663 kb on - strand, within DZA65_RS07250

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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1,505,096 + -0.2
1,505,096 + +0.1
1,505,096 + -1.0
1,505,096 + +0.6
1,505,096 + +0.6
1,505,096 + +0.6
1,505,097 - -0.2
1,505,097 - +0.1
1,505,097 - +0.7
1,505,119 + -1.7
1,505,298 + DZA65_RS07240 0.21 +1.0
1,505,298 + DZA65_RS07240 0.21 -0.2
1,505,298 + DZA65_RS07240 0.21 +0.4
1,505,299 - DZA65_RS07240 0.21 -1.3
1,505,299 - DZA65_RS07240 0.21 +1.1
1,505,299 - DZA65_RS07240 0.21 -0.1
1,505,345 + DZA65_RS07240 0.26 -0.2
1,505,345 + DZA65_RS07240 0.26 +0.3
1,505,345 + DZA65_RS07240 0.26 +1.5
1,505,352 + DZA65_RS07240 0.27 +0.8
1,505,353 - DZA65_RS07240 0.27 -0.2
1,505,353 - DZA65_RS07240 0.27 -0.4
1,505,360 - DZA65_RS07240 0.28 +0.3
1,505,360 - DZA65_RS07240 0.28 +0.3
1,505,360 - DZA65_RS07240 0.28 +0.8
1,505,360 - DZA65_RS07240 0.28 +0.3
1,505,360 - DZA65_RS07240 0.28 -0.9
1,505,498 + DZA65_RS07240 0.42 +0.1
1,505,499 - +1.1
1,505,499 - DZA65_RS07240 0.42 +0.6
1,505,730 + DZA65_RS07240 0.67 +0.4
1,505,730 + DZA65_RS07240 0.67 +0.3
1,505,730 + DZA65_RS07240 0.67 +0.1
1,505,730 + DZA65_RS07240 0.67 -1.2
1,505,730 + DZA65_RS07240 0.67 +0.8
1,505,731 - DZA65_RS07240 0.67 -0.6
1,505,731 - DZA65_RS07240 0.67 -0.3
1,505,731 - DZA65_RS07240 0.67 +0.2
1,505,731 - DZA65_RS07240 0.67 +0.4
1,505,731 - DZA65_RS07240 0.67 +0.8
1,505,731 - DZA65_RS07240 0.67 +0.0
1,505,731 - DZA65_RS07240 0.67 -0.0
1,505,816 + DZA65_RS07240 0.76 -0.2
1,505,817 - DZA65_RS07240 0.76 -0.9
1,505,931 + DZA65_RS07240 0.88 -0.2
1,505,931 + DZA65_RS07240 0.88 -0.9
1,505,932 - DZA65_RS07240 0.89 -1.4
1,506,034 + +0.1
1,506,035 - -1.9
1,506,244 + DZA65_RS07245 0.24 +0.5
1,506,244 + DZA65_RS07245 0.24 +0.3
1,506,245 - DZA65_RS07245 0.25 -0.0
1,506,248 + DZA65_RS07245 0.25 -0.3
1,506,248 + DZA65_RS07245 0.25 -0.1
1,506,248 + DZA65_RS07245 0.25 +1.7
1,506,249 - DZA65_RS07245 0.25 +0.1
1,506,249 - DZA65_RS07245 0.25 +0.1
1,506,249 - DZA65_RS07245 0.25 -0.1
1,506,273 + DZA65_RS07245 0.28 -0.2
1,506,274 - DZA65_RS07245 0.28 +0.9
1,506,365 + DZA65_RS07245 0.39 -0.2
1,506,448 + DZA65_RS07245 0.48 -0.4
1,506,448 + DZA65_RS07245 0.48 -1.0
1,506,448 + DZA65_RS07245 0.48 +1.3
1,506,448 + DZA65_RS07245 0.48 +0.1
1,506,449 - DZA65_RS07245 0.48 -1.9
1,506,449 - DZA65_RS07245 0.48 +1.1
1,506,452 - DZA65_RS07245 0.49 +0.6
1,506,452 - DZA65_RS07245 0.49 +0.9
1,506,485 + DZA65_RS07245 0.53 -0.9
1,506,485 + DZA65_RS07245 0.53 +0.3
1,506,485 + DZA65_RS07245 0.53 +0.5
1,506,486 - DZA65_RS07245 0.53 +0.7
1,506,486 - DZA65_RS07245 0.53 -0.3
1,506,486 - DZA65_RS07245 0.53 -1.0
1,506,518 + DZA65_RS07245 0.56 -0.9
1,506,566 + DZA65_RS07245 0.62 +0.9
1,506,566 + DZA65_RS07245 0.62 -1.1
1,506,567 - DZA65_RS07245 0.62 +0.5
1,506,567 - DZA65_RS07245 0.62 -0.4
1,506,567 - DZA65_RS07245 0.62 +0.7
1,506,567 - DZA65_RS07245 0.62 +0.0
1,506,567 - DZA65_RS07245 0.62 -1.1
1,506,707 + DZA65_RS07245 0.79 +0.8
1,506,707 + DZA65_RS07245 0.79 +1.1
1,506,708 - DZA65_RS07245 0.79 +0.1
1,506,708 - DZA65_RS07245 0.79 -1.0
1,506,751 - DZA65_RS07245 0.84 +1.1
1,506,779 - DZA65_RS07245 0.87 +0.6
1,506,822 + +0.1
1,506,822 + -0.4
1,506,823 - -2.0
1,506,823 - +0.9
1,506,894 - +0.7
1,506,902 + -0.7
1,506,903 - -1.9
1,506,920 + +0.5
1,506,920 + +0.1
1,506,920 + -2.0
1,506,920 + +1.3
1,506,920 + +0.6
1,506,921 - -0.9
1,506,921 - -0.7
1,506,938 + -0.7
1,506,939 - -1.4
1,507,173 - DZA65_RS07250 0.28 +0.0
1,507,173 - DZA65_RS07250 0.28 -1.2
1,507,173 - DZA65_RS07250 0.28 -0.5
1,507,173 - DZA65_RS07250 0.28 +0.1
1,507,221 + DZA65_RS07250 0.33 -0.1
1,507,222 - DZA65_RS07250 0.33 -0.4
1,507,364 - DZA65_RS07250 0.47 -0.4
1,507,562 + DZA65_RS07250 0.66 +1.4
1,507,597 + DZA65_RS07250 0.70 -0.0
1,507,597 + +1.7
1,507,597 + DZA65_RS07250 0.70 +0.6
1,507,597 + DZA65_RS07250 0.70 +0.1
1,507,597 + DZA65_RS07250 0.70 +1.1
1,507,597 + DZA65_RS07250 0.70 +1.0
1,507,598 - DZA65_RS07250 0.70 -0.7
1,507,598 - DZA65_RS07250 0.70 -0.8
1,507,598 - DZA65_RS07250 0.70 -0.5
1,507,598 - DZA65_RS07250 0.70 -0.7
1,507,598 - DZA65_RS07250 0.70 -0.1
1,507,660 + DZA65_RS07250 0.76 +0.4
1,507,660 + DZA65_RS07250 0.76 +0.6
1,507,660 + DZA65_RS07250 0.76 -1.7
1,507,660 + DZA65_RS07250 0.76 -0.7
1,507,662 + DZA65_RS07250 0.76 +0.5
1,507,662 + DZA65_RS07250 0.76 -1.0
1,507,663 - DZA65_RS07250 0.76 +0.4

Or see this region's nucleotide sequence