Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS06410

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
1,334,936	+		DZA65_RS06400	0.45	+0.4
1,334,936	+		DZA65_RS06400	0.45	+0.0
1,334,936	+		DZA65_RS06400	0.45	-2.0
1,334,936	+		DZA65_RS06400	0.45	+0.2
1,334,936	+		DZA65_RS06400	0.45	+1.2
1,334,936	+		DZA65_RS06400	0.45	+0.0
1,334,936	+		DZA65_RS06400	0.45	+1.6
1,334,937	-		DZA65_RS06400	0.45	+1.0
1,334,937	-		DZA65_RS06400	0.45	-0.2
1,334,937	-		DZA65_RS06400	0.45	-0.4
1,334,937	-		DZA65_RS06400	0.45	-1.5
1,334,937	-		DZA65_RS06400	0.45	+0.5
1,334,937	-		DZA65_RS06400	0.45	-0.3
1,334,937	-		DZA65_RS06400	0.45	-0.3
1,335,082	-		DZA65_RS06400	0.59	-0.3
1,335,098	+				-1.1
1,335,098	+		DZA65_RS06400	0.61	-0.4
1,335,098	+		DZA65_RS06400	0.61	-0.4
1,335,098	+		DZA65_RS06400	0.61	-0.1
1,335,098	+		DZA65_RS06400	0.61	-0.1
1,335,098	+		DZA65_RS06400	0.61	-1.7
1,335,098	+		DZA65_RS06400	0.61	+0.5
1,335,099	-		DZA65_RS06400	0.61	-0.2
1,335,099	-		DZA65_RS06400	0.61	-0.6
1,335,102	-		DZA65_RS06400	0.61	-0.3
1,335,114	-		DZA65_RS06400	0.63	-0.5
1,335,114	-		DZA65_RS06400	0.63	+1.0
1,335,114	-		DZA65_RS06400	0.63	-0.2
1,335,147	+		DZA65_RS06400	0.66	+2.2
1,335,147	+		DZA65_RS06400	0.66	+0.2
1,335,148	-		DZA65_RS06400	0.66	+1.3
1,335,247	-		DZA65_RS06400	0.76	-1.8
1,335,262	+		DZA65_RS06400	0.77	+0.9
1,335,348	+		DZA65_RS06400	0.86	-1.6
1,335,369	+		DZA65_RS06400	0.88	+0.1
1,335,369	+		DZA65_RS06400	0.88	-0.1
1,335,369	+		DZA65_RS06400	0.88	-1.6
1,335,369	+		DZA65_RS06400	0.88	+0.1
1,335,369	+		DZA65_RS06400	0.88	-0.4
1,335,369	+		DZA65_RS06400	0.88	-0.1
1,335,369	+		DZA65_RS06400	0.88	-1.2
1,335,370	-		DZA65_RS06400	0.88	+0.6
1,335,370	-		DZA65_RS06400	0.88	-0.5
1,335,370	-		DZA65_RS06400	0.88	-0.2
1,335,370	-		DZA65_RS06400	0.88	+0.2
1,335,370	-		DZA65_RS06400	0.88	-0.5
1,335,383	+		DZA65_RS06400	0.90	+0.5
1,335,384	-		DZA65_RS06400	0.90	-0.0
1,335,384	-		DZA65_RS06400	0.90	+0.3
1,335,389	+				-0.3
1,335,389	+				+0.5
1,335,390	-				+1.2
1,335,390	-				-0.2
1,335,390	-				+0.8
1,335,390	-				-0.2
1,335,480	+				+0.5
1,335,480	+				+0.9
1,335,480	+				-0.1
1,335,481	-				-0.2
1,335,481	-				-1.2
1,335,481	-				+1.2
1,335,481	-				-0.0
1,335,481	-				-0.6
1,335,481	-				-0.4
1,335,490	-				+0.7
1,335,490	-				+1.0
1,335,501	+				-0.0
1,335,501	+				-0.7
1,335,502	-				+0.0
1,335,502	-				-1.8
1,335,502	-				-1.6
1,335,510	+				-1.2
1,335,511	-				+0.1
1,335,541	-				-1.1
1,335,541	-				+0.9
1,335,546	+				+0.4
1,335,546	+				+0.9
1,335,546	+				+0.9
1,335,546	+				-0.2
1,335,546	+				-0.9
1,335,546	+				-0.7
1,335,547	-				-0.0
1,335,547	-				-1.2
1,335,547	-				+0.4
1,335,547	-				-0.6
1,335,547	-				-0.0
1,335,547	-				-0.5
1,335,547	-				+0.2
1,335,547	-				-0.7
1,335,547	-				+1.2
1,335,549	+				+0.1
1,335,549	+				+0.1
1,335,562	+				-2.2
1,335,585	+				+0.0
1,335,585	+				+0.4
1,335,623	+				-1.8
1,335,698	+				-0.6
1,335,698	+				+0.0
1,335,699	-				-1.1
1,335,699	-				+0.4
1,335,699	-				+0.8
1,335,775	-				-0.5
1,335,775	-				+0.1
1,335,775	-				-0.4
1,335,798	-				-0.8
1,335,810	+				-0.4
1,335,810	+				+0.9
1,335,829	+				+1.2
1,335,830	-				-0.8
1,335,885	-				+0.9
1,335,885	-				-0.4
1,335,991	-				+0.8
1,336,029	-		DZA65_RS06410	0.13	+0.8
1,336,171	+		DZA65_RS06410	0.27	+2.4
1,336,172	-		DZA65_RS06410	0.27	+0.3
1,336,338	+		DZA65_RS06410	0.44	+0.9
1,336,360	+		DZA65_RS06410	0.46	+0.1
1,336,394	+		DZA65_RS06410	0.49	+0.3
1,336,395	-		DZA65_RS06410	0.49	+0.6
1,336,395	-		DZA65_RS06410	0.49	+1.5
1,336,395	-		DZA65_RS06410	0.49	-2.0
1,336,395	-		DZA65_RS06410	0.49	-1.3
1,336,395	-		DZA65_RS06410	0.49	-0.9
1,336,395	-		DZA65_RS06410	0.49	-0.0
1,336,532	+		DZA65_RS06410	0.63	-2.0
1,336,532	+		DZA65_RS06410	0.63	-1.8
1,336,532	+		DZA65_RS06410	0.63	+0.5
1,336,532	+		DZA65_RS06410	0.63	-0.9
1,336,532	+		DZA65_RS06410	0.63	-0.4
1,336,533	-		DZA65_RS06410	0.63	-0.2
1,336,533	-		DZA65_RS06410	0.63	-1.6
1,336,533	-		DZA65_RS06410	0.63	+0.6
1,336,533	-		DZA65_RS06410	0.63	-1.8
1,336,533	-		DZA65_RS06410	0.63	+0.0
1,336,544	+		DZA65_RS06410	0.64	+0.3
1,336,609	+		DZA65_RS06410	0.71	+0.2
1,336,610	-		DZA65_RS06410	0.71	-1.6
1,336,673	+		DZA65_RS06410	0.77	+0.7
1,336,721	+		DZA65_RS06410	0.82	+0.5
1,336,795	-		DZA65_RS06410	0.89	-1.2
1,336,895	+				+0.6
1,336,896	-				+0.4
1,336,896	-				+0.2
1,336,905	+				+0.9
1,336,906	-				+0.0
1,336,963	+				-0.4
1,337,026	-				-0.2
1,337,108	-				+0.2
1,337,108	-				-0.4
1,337,160	-				-0.1
1,337,160	-				+0.4
1,337,165	+				-0.1
1,337,165	+				+1.2
1,337,271	-		DZA65_RS06415	0.17	-0.4
1,337,434	-		DZA65_RS06415	0.42	-0.3
1,337,434	-		DZA65_RS06415	0.42	-0.4
1,337,457	-		DZA65_RS06415	0.46	-0.1
1,337,481	+		DZA65_RS06415	0.50	-0.5
1,337,482	-		DZA65_RS06415	0.50	-0.5
1,337,493	+		DZA65_RS06415	0.51	-0.5
1,337,537	+		DZA65_RS06415	0.58	+0.1
1,337,538	-		DZA65_RS06415	0.59	+0.0
1,337,538	-		DZA65_RS06415	0.59	-1.8
1,337,538	-		DZA65_RS06415	0.59	+0.4
1,337,567	+		DZA65_RS06415	0.63	+0.6
1,337,619	-		DZA65_RS06415	0.71	-1.1
1,337,701	+		DZA65_RS06415	0.84	-1.8
1,337,701	+		DZA65_RS06415	0.84	-0.1
1,337,701	+		DZA65_RS06415	0.84	-0.2
1,337,710	-		DZA65_RS06415	0.85	+0.1