Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS04750 and DZA65_RS04755 overlap by 4 nucleotides DZA65_RS04755 and DZA65_RS04760 are separated by 2 nucleotides DZA65_RS04760 and DZA65_RS04765 are separated by 4 nucleotides
DZA65_RS04750: DZA65_RS04750 - Appr-1-p processing protein, at 986,840 to 987,907
_RS04750
DZA65_RS04755: DZA65_RS04755 - DUF4433 domain-containing protein, at 987,904 to 988,560
_RS04755
DZA65_RS04760: DZA65_RS04760 - DUF4433 domain-containing protein, at 988,563 to 989,138
_RS04760
DZA65_RS04765: DZA65_RS04765 - restriction endonuclease subunit S, at 989,143 to 990,492
_RS04765
Position (kb) 988
989
990 Strain fitness (log2 ratio) -2
-1
0
1
2 at 988.614 kb on - strand at 988.614 kb on - strand at 988.615 kb on + strand at 988.615 kb on + strand at 988.615 kb on + strand at 988.616 kb on - strand at 988.634 kb on + strand, within DZA65_RS04760 at 988.666 kb on + strand, within DZA65_RS04760 at 988.666 kb on + strand, within DZA65_RS04760 at 988.666 kb on + strand, within DZA65_RS04760 at 988.666 kb on + strand, within DZA65_RS04760 at 988.666 kb on + strand, within DZA65_RS04760 at 988.666 kb on + strand, within DZA65_RS04760 at 988.666 kb on + strand, within DZA65_RS04760 at 988.666 kb on + strand, within DZA65_RS04760 at 988.667 kb on - strand, within DZA65_RS04760 at 988.667 kb on - strand, within DZA65_RS04760 at 988.667 kb on - strand, within DZA65_RS04760 at 988.667 kb on - strand, within DZA65_RS04760 at 988.667 kb on - strand, within DZA65_RS04760 at 988.667 kb on - strand, within DZA65_RS04760 at 988.667 kb on - strand, within DZA65_RS04760 at 988.667 kb on - strand, within DZA65_RS04760 at 988.692 kb on + strand, within DZA65_RS04760 at 988.693 kb on - strand, within DZA65_RS04760 at 988.693 kb on - strand, within DZA65_RS04760 at 988.693 kb on - strand, within DZA65_RS04760 at 988.721 kb on + strand, within DZA65_RS04760 at 988.722 kb on - strand, within DZA65_RS04760 at 988.739 kb on + strand, within DZA65_RS04760 at 988.740 kb on - strand, within DZA65_RS04760 at 988.740 kb on - strand, within DZA65_RS04760 at 988.740 kb on - strand, within DZA65_RS04760 at 988.746 kb on - strand, within DZA65_RS04760 at 988.746 kb on - strand, within DZA65_RS04760 at 988.750 kb on + strand, within DZA65_RS04760 at 988.750 kb on + strand, within DZA65_RS04760 at 988.750 kb on + strand, within DZA65_RS04760 at 988.751 kb on - strand, within DZA65_RS04760 at 988.751 kb on - strand, within DZA65_RS04760 at 988.751 kb on - strand, within DZA65_RS04760 at 988.784 kb on + strand, within DZA65_RS04760 at 988.790 kb on + strand, within DZA65_RS04760 at 988.790 kb on + strand, within DZA65_RS04760 at 988.790 kb on + strand, within DZA65_RS04760 at 988.791 kb on - strand, within DZA65_RS04760 at 988.791 kb on - strand, within DZA65_RS04760 at 988.791 kb on - strand, within DZA65_RS04760 at 988.791 kb on - strand, within DZA65_RS04760 at 988.802 kb on - strand, within DZA65_RS04760 at 988.814 kb on + strand, within DZA65_RS04760 at 988.815 kb on - strand, within DZA65_RS04760 at 988.859 kb on + strand, within DZA65_RS04760 at 988.859 kb on + strand, within DZA65_RS04760 at 988.859 kb on + strand, within DZA65_RS04760 at 988.860 kb on - strand, within DZA65_RS04760 at 988.860 kb on - strand, within DZA65_RS04760 at 988.860 kb on - strand, within DZA65_RS04760 at 988.873 kb on + strand, within DZA65_RS04760 at 988.873 kb on + strand, within DZA65_RS04760 at 988.916 kb on + strand, within DZA65_RS04760 at 988.916 kb on + strand, within DZA65_RS04760 at 988.916 kb on + strand, within DZA65_RS04760 at 988.919 kb on + strand, within DZA65_RS04760 at 988.972 kb on + strand, within DZA65_RS04760 at 988.972 kb on + strand, within DZA65_RS04760 at 988.973 kb on - strand, within DZA65_RS04760 at 988.973 kb on - strand, within DZA65_RS04760 at 989.004 kb on + strand, within DZA65_RS04760 at 989.004 kb on + strand, within DZA65_RS04760 at 989.005 kb on - strand, within DZA65_RS04760 at 989.100 kb on + strand at 989.100 kb on + strand at 989.129 kb on + strand at 989.130 kb on - strand at 989.138 kb on + strand at 989.138 kb on + strand at 989.138 kb on + strand at 989.138 kb on + strand at 989.145 kb on - strand at 989.145 kb on - strand at 989.145 kb on - strand at 989.145 kb on - strand at 989.145 kb on - strand at 989.155 kb on + strand at 989.156 kb on - strand at 989.177 kb on - strand at 989.202 kb on + strand at 989.256 kb on + strand at 989.313 kb on + strand, within DZA65_RS04765 at 989.313 kb on + strand, within DZA65_RS04765 at 989.313 kb on + strand, within DZA65_RS04765 at 989.313 kb on + strand, within DZA65_RS04765 at 989.313 kb on + strand, within DZA65_RS04765 at 989.314 kb on - strand, within DZA65_RS04765 at 989.314 kb on - strand, within DZA65_RS04765 at 989.314 kb on - strand, within DZA65_RS04765 at 989.314 kb on - strand, within DZA65_RS04765 at 989.316 kb on - strand, within DZA65_RS04765 at 989.316 kb on - strand, within DZA65_RS04765 at 989.318 kb on - strand, within DZA65_RS04765 at 989.329 kb on + strand, within DZA65_RS04765 at 989.330 kb on - strand, within DZA65_RS04765 at 989.331 kb on + strand, within DZA65_RS04765 at 989.331 kb on + strand, within DZA65_RS04765 at 989.332 kb on - strand, within DZA65_RS04765 at 989.332 kb on - strand, within DZA65_RS04765 at 989.332 kb on - strand, within DZA65_RS04765 at 989.332 kb on - strand, within DZA65_RS04765 at 989.334 kb on + strand, within DZA65_RS04765 at 989.335 kb on - strand, within DZA65_RS04765 at 989.335 kb on - strand, within DZA65_RS04765 at 989.375 kb on + strand, within DZA65_RS04765 at 989.375 kb on + strand, within DZA65_RS04765 at 989.375 kb on + strand, within DZA65_RS04765 at 989.376 kb on - strand, within DZA65_RS04765 at 989.379 kb on + strand, within DZA65_RS04765 at 989.381 kb on + strand, within DZA65_RS04765 at 989.382 kb on - strand, within DZA65_RS04765 at 989.382 kb on - strand, within DZA65_RS04765 at 989.382 kb on - strand, within DZA65_RS04765 at 989.401 kb on + strand, within DZA65_RS04765 at 989.419 kb on - strand, within DZA65_RS04765 at 989.477 kb on - strand, within DZA65_RS04765 at 989.580 kb on + strand, within DZA65_RS04765 at 989.584 kb on + strand, within DZA65_RS04765 at 989.624 kb on - strand, within DZA65_RS04765 at 989.722 kb on + strand, within DZA65_RS04765 at 989.725 kb on - strand, within DZA65_RS04765 at 989.732 kb on - strand, within DZA65_RS04765 at 989.734 kb on + strand, within DZA65_RS04765 at 989.735 kb on - strand, within DZA65_RS04765 at 989.735 kb on - strand, within DZA65_RS04765 at 989.735 kb on - strand, within DZA65_RS04765 at 989.736 kb on + strand, within DZA65_RS04765 at 989.744 kb on - strand, within DZA65_RS04765 at 989.745 kb on + strand, within DZA65_RS04765 at 989.754 kb on + strand, within DZA65_RS04765 at 989.755 kb on - strand, within DZA65_RS04765 at 989.755 kb on - strand, within DZA65_RS04765 at 989.756 kb on + strand, within DZA65_RS04765 at 989.794 kb on - strand, within DZA65_RS04765 at 989.803 kb on - strand, within DZA65_RS04765 at 989.920 kb on - strand, within DZA65_RS04765 at 989.924 kb on - strand, within DZA65_RS04765 at 989.924 kb on - strand, within DZA65_RS04765 at 989.924 kb on - strand, within DZA65_RS04765 at 989.956 kb on - strand, within DZA65_RS04765 at 990.016 kb on - strand, within DZA65_RS04765 at 990.060 kb on - strand, within DZA65_RS04765 at 990.097 kb on - strand, within DZA65_RS04765 at 990.134 kb on + strand, within DZA65_RS04765 at 990.134 kb on + strand, within DZA65_RS04765 at 990.135 kb on - strand, within DZA65_RS04765
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 988,614 - -0.6 988,614 - -1.7 988,615 + -0.5 988,615 + -0.3 988,615 + +0.5 988,616 - +1.3 988,634 + DZA65_RS04760 0.12 -0.7 988,666 + DZA65_RS04760 0.18 -1.3 988,666 + DZA65_RS04760 0.18 +0.3 988,666 + DZA65_RS04760 0.18 -0.9 988,666 + DZA65_RS04760 0.18 -2.4 988,666 + DZA65_RS04760 0.18 -0.4 988,666 + DZA65_RS04760 0.18 -0.5 988,666 + DZA65_RS04760 0.18 -0.0 988,666 + DZA65_RS04760 0.18 +0.5 988,667 - DZA65_RS04760 0.18 +0.6 988,667 - DZA65_RS04760 0.18 -0.3 988,667 - DZA65_RS04760 0.18 -0.3 988,667 - DZA65_RS04760 0.18 -0.3 988,667 - DZA65_RS04760 0.18 +0.5 988,667 - DZA65_RS04760 0.18 -0.7 988,667 - DZA65_RS04760 0.18 -0.5 988,667 - DZA65_RS04760 0.18 -0.1 988,692 + DZA65_RS04760 0.22 -1.3 988,693 - DZA65_RS04760 0.23 -1.0 988,693 - DZA65_RS04760 0.23 +0.3 988,693 - DZA65_RS04760 0.23 -0.1 988,721 + DZA65_RS04760 0.27 +0.1 988,722 - DZA65_RS04760 0.28 -0.4 988,739 + DZA65_RS04760 0.31 +0.8 988,740 - DZA65_RS04760 0.31 -0.3 988,740 - DZA65_RS04760 0.31 +0.9 988,740 - DZA65_RS04760 0.31 +0.1 988,746 - DZA65_RS04760 0.32 +0.2 988,746 - DZA65_RS04760 0.32 -1.2 988,750 + DZA65_RS04760 0.32 -0.2 988,750 + DZA65_RS04760 0.32 -0.7 988,750 + DZA65_RS04760 0.32 +1.3 988,751 - DZA65_RS04760 0.33 -0.1 988,751 - DZA65_RS04760 0.33 -1.2 988,751 - DZA65_RS04760 0.33 -0.7 988,784 + DZA65_RS04760 0.38 +0.6 988,790 + DZA65_RS04760 0.39 -0.7 988,790 + DZA65_RS04760 0.39 -0.0 988,790 + DZA65_RS04760 0.39 +0.2 988,791 - DZA65_RS04760 0.40 -0.6 988,791 - DZA65_RS04760 0.40 -0.4 988,791 - DZA65_RS04760 0.40 +0.5 988,791 - DZA65_RS04760 0.40 +0.3 988,802 - DZA65_RS04760 0.41 -1.0 988,814 + DZA65_RS04760 0.44 -1.3 988,815 - DZA65_RS04760 0.44 +0.6 988,859 + DZA65_RS04760 0.51 -1.5 988,859 + DZA65_RS04760 0.51 -1.9 988,859 + DZA65_RS04760 0.51 -1.0 988,860 - DZA65_RS04760 0.52 -0.9 988,860 - DZA65_RS04760 0.52 +1.1 988,860 - DZA65_RS04760 0.52 -0.3 988,873 + DZA65_RS04760 0.54 -1.3 988,873 + DZA65_RS04760 0.54 -0.7 988,916 + DZA65_RS04760 0.61 -0.5 988,916 + DZA65_RS04760 0.61 +0.3 988,916 + DZA65_RS04760 0.61 +0.5 988,919 + DZA65_RS04760 0.62 -1.7 988,972 + DZA65_RS04760 0.71 -0.4 988,972 + DZA65_RS04760 0.71 -0.1 988,973 - DZA65_RS04760 0.71 +0.8 988,973 - DZA65_RS04760 0.71 -1.0 989,004 + DZA65_RS04760 0.77 +0.7 989,004 + DZA65_RS04760 0.77 +0.2 989,005 - DZA65_RS04760 0.77 -0.6 989,100 + -1.1 989,100 + +1.6 989,129 + -1.0 989,130 - +0.7 989,138 + -0.3 989,138 + -0.2 989,138 + -2.0 989,138 + -0.9 989,145 - -2.1 989,145 - -0.1 989,145 - -0.0 989,145 - +0.2 989,145 - +1.5 989,155 + +0.1 989,156 - -0.0 989,177 - +0.2 989,202 + -0.0 989,256 + -0.1 989,313 + DZA65_RS04765 0.13 +0.3 989,313 + DZA65_RS04765 0.13 -0.0 989,313 + DZA65_RS04765 0.13 -0.2 989,313 + DZA65_RS04765 0.13 -0.8 989,313 + DZA65_RS04765 0.13 -0.1 989,314 - DZA65_RS04765 0.13 -0.5 989,314 - DZA65_RS04765 0.13 -1.1 989,314 - DZA65_RS04765 0.13 -0.5 989,314 - DZA65_RS04765 0.13 +0.1 989,316 - DZA65_RS04765 0.13 -0.8 989,316 - DZA65_RS04765 0.13 -0.4 989,318 - DZA65_RS04765 0.13 +0.2 989,329 + DZA65_RS04765 0.14 -0.0 989,330 - DZA65_RS04765 0.14 -1.9 989,331 + DZA65_RS04765 0.14 +0.4 989,331 + DZA65_RS04765 0.14 +0.3 989,332 - DZA65_RS04765 0.14 -0.3 989,332 - DZA65_RS04765 0.14 -0.2 989,332 - DZA65_RS04765 0.14 +0.4 989,332 - DZA65_RS04765 0.14 +0.2 989,334 + DZA65_RS04765 0.14 +0.6 989,335 - DZA65_RS04765 0.14 -0.0 989,335 - DZA65_RS04765 0.14 +0.0 989,375 + DZA65_RS04765 0.17 +0.3 989,375 + DZA65_RS04765 0.17 +2.3 989,375 + DZA65_RS04765 0.17 -0.1 989,376 - DZA65_RS04765 0.17 -0.6 989,379 + DZA65_RS04765 0.17 -0.7 989,381 + DZA65_RS04765 0.18 -0.6 989,382 - DZA65_RS04765 0.18 -0.4 989,382 - DZA65_RS04765 0.18 -1.7 989,382 - DZA65_RS04765 0.18 -1.3 989,401 + DZA65_RS04765 0.19 -1.3 989,419 - DZA65_RS04765 0.20 -0.8 989,477 - DZA65_RS04765 0.25 +0.7 989,580 + DZA65_RS04765 0.32 -0.8 989,584 + DZA65_RS04765 0.33 -0.2 989,624 - DZA65_RS04765 0.36 -0.7 989,722 + DZA65_RS04765 0.43 -0.2 989,725 - DZA65_RS04765 0.43 +0.5 989,732 - DZA65_RS04765 0.44 +1.1 989,734 + DZA65_RS04765 0.44 -0.2 989,735 - DZA65_RS04765 0.44 -1.0 989,735 - DZA65_RS04765 0.44 +0.3 989,735 - DZA65_RS04765 0.44 -1.9 989,736 + DZA65_RS04765 0.44 -0.7 989,744 - DZA65_RS04765 0.45 +0.3 989,745 + DZA65_RS04765 0.45 -0.1 989,754 + DZA65_RS04765 0.45 -0.2 989,755 - DZA65_RS04765 0.45 +0.3 989,755 - DZA65_RS04765 0.45 -0.8 989,756 + DZA65_RS04765 0.45 -0.3 989,794 - DZA65_RS04765 0.48 +0.9 989,803 - DZA65_RS04765 0.49 -0.7 989,920 - DZA65_RS04765 0.58 +0.1 989,924 - DZA65_RS04765 0.58 -0.1 989,924 - DZA65_RS04765 0.58 -0.4 989,924 - DZA65_RS04765 0.58 +0.5 989,956 - DZA65_RS04765 0.60 -1.1 990,016 - DZA65_RS04765 0.65 +0.5 990,060 - DZA65_RS04765 0.68 -0.3 990,097 - DZA65_RS04765 0.71 -0.3 990,134 + DZA65_RS04765 0.73 +0.1 990,134 + DZA65_RS04765 0.73 -0.8 990,135 - DZA65_RS04765 0.73 -0.3
Or see this region's nucleotide sequence