Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS04525 and DZA65_RS04530 are separated by 121 nucleotides DZA65_RS04530 and DZA65_RS04535 overlap by 26 nucleotides DZA65_RS04535 and DZA65_RS04540 are separated by 5 nucleotides
DZA65_RS04525: DZA65_RS04525 - tartrate dehydrogenase, at 942,897 to 943,982
_RS04525
DZA65_RS04530: DZA65_RS04530 - LysR family transcriptional regulator, at 944,104 to 945,060
_RS04530
DZA65_RS04535: DZA65_RS04535 - NADPH-dependent 7-cyano-7-deazaguanine reductase QueF, at 945,035 to 945,877
_RS04535
DZA65_RS04540: DZA65_RS04540 - queuosine precursor transporter, at 945,883 to 946,758
_RS04540
Position (kb) 944
945
946 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 943.307 kb on + strand, within DZA65_RS04525 at 943.313 kb on + strand, within DZA65_RS04525 at 943.314 kb on - strand, within DZA65_RS04525 at 943.318 kb on + strand, within DZA65_RS04525 at 943.318 kb on + strand, within DZA65_RS04525 at 943.318 kb on + strand, within DZA65_RS04525 at 943.318 kb on + strand, within DZA65_RS04525 at 943.318 kb on + strand, within DZA65_RS04525 at 943.318 kb on + strand, within DZA65_RS04525 at 943.318 kb on + strand, within DZA65_RS04525 at 943.318 kb on + strand, within DZA65_RS04525 at 943.318 kb on + strand, within DZA65_RS04525 at 943.319 kb on - strand, within DZA65_RS04525 at 943.319 kb on - strand, within DZA65_RS04525 at 943.319 kb on - strand at 943.319 kb on - strand, within DZA65_RS04525 at 943.319 kb on - strand, within DZA65_RS04525 at 943.319 kb on - strand, within DZA65_RS04525 at 943.319 kb on - strand, within DZA65_RS04525 at 943.379 kb on - strand, within DZA65_RS04525 at 943.561 kb on + strand, within DZA65_RS04525 at 943.591 kb on + strand, within DZA65_RS04525 at 943.591 kb on + strand, within DZA65_RS04525 at 943.672 kb on + strand, within DZA65_RS04525 at 943.672 kb on + strand, within DZA65_RS04525 at 943.673 kb on - strand, within DZA65_RS04525 at 943.673 kb on - strand, within DZA65_RS04525 at 943.673 kb on - strand, within DZA65_RS04525 at 943.762 kb on + strand, within DZA65_RS04525 at 943.762 kb on + strand, within DZA65_RS04525 at 943.762 kb on + strand, within DZA65_RS04525 at 943.762 kb on + strand, within DZA65_RS04525 at 943.763 kb on - strand, within DZA65_RS04525 at 943.763 kb on - strand, within DZA65_RS04525 at 943.763 kb on - strand, within DZA65_RS04525 at 943.763 kb on - strand, within DZA65_RS04525 at 943.763 kb on - strand, within DZA65_RS04525 at 943.828 kb on + strand, within DZA65_RS04525 at 943.828 kb on + strand, within DZA65_RS04525 at 943.829 kb on - strand, within DZA65_RS04525 at 943.829 kb on - strand, within DZA65_RS04525 at 943.831 kb on + strand, within DZA65_RS04525 at 943.831 kb on + strand, within DZA65_RS04525 at 943.832 kb on - strand, within DZA65_RS04525 at 943.832 kb on - strand, within DZA65_RS04525 at 943.908 kb on + strand at 943.909 kb on - strand at 944.035 kb on + strand at 944.035 kb on + strand at 944.035 kb on + strand at 944.035 kb on + strand at 944.035 kb on + strand at 944.035 kb on + strand at 944.035 kb on + strand at 944.035 kb on + strand at 944.035 kb on + strand at 944.036 kb on - strand at 944.036 kb on - strand at 944.036 kb on - strand at 944.039 kb on + strand at 944.039 kb on + strand at 944.039 kb on + strand at 944.040 kb on - strand at 944.040 kb on - strand at 944.140 kb on - strand at 944.140 kb on - strand at 944.240 kb on + strand, within DZA65_RS04530 at 944.256 kb on + strand, within DZA65_RS04530 at 944.256 kb on + strand, within DZA65_RS04530 at 944.296 kb on + strand, within DZA65_RS04530 at 944.296 kb on + strand, within DZA65_RS04530 at 944.297 kb on - strand, within DZA65_RS04530 at 944.351 kb on + strand, within DZA65_RS04530 at 944.351 kb on + strand, within DZA65_RS04530 at 944.352 kb on - strand, within DZA65_RS04530 at 944.421 kb on + strand, within DZA65_RS04530 at 944.421 kb on + strand, within DZA65_RS04530 at 944.421 kb on + strand, within DZA65_RS04530 at 944.421 kb on + strand at 944.484 kb on + strand, within DZA65_RS04530 at 944.484 kb on + strand, within DZA65_RS04530 at 944.484 kb on + strand, within DZA65_RS04530 at 944.485 kb on - strand, within DZA65_RS04530 at 944.485 kb on - strand, within DZA65_RS04530 at 944.485 kb on - strand, within DZA65_RS04530 at 944.614 kb on + strand, within DZA65_RS04530 at 944.686 kb on + strand, within DZA65_RS04530 at 944.687 kb on - strand, within DZA65_RS04530 at 944.687 kb on - strand, within DZA65_RS04530 at 944.717 kb on - strand, within DZA65_RS04530 at 944.736 kb on + strand, within DZA65_RS04530 at 944.815 kb on - strand, within DZA65_RS04530 at 944.884 kb on + strand, within DZA65_RS04530 at 944.884 kb on + strand, within DZA65_RS04530 at 944.884 kb on + strand, within DZA65_RS04530 at 944.885 kb on - strand, within DZA65_RS04530 at 944.885 kb on - strand, within DZA65_RS04530 at 944.908 kb on + strand, within DZA65_RS04530 at 944.908 kb on + strand, within DZA65_RS04530 at 944.908 kb on + strand, within DZA65_RS04530 at 944.908 kb on + strand, within DZA65_RS04530 at 944.909 kb on - strand, within DZA65_RS04530 at 944.909 kb on - strand, within DZA65_RS04530 at 944.909 kb on - strand, within DZA65_RS04530 at 944.909 kb on - strand, within DZA65_RS04530 at 944.909 kb on - strand, within DZA65_RS04530 at 944.909 kb on - strand, within DZA65_RS04530 at 944.909 kb on - strand, within DZA65_RS04530 at 944.909 kb on - strand, within DZA65_RS04530 at 944.909 kb on - strand, within DZA65_RS04530 at 944.909 kb on - strand, within DZA65_RS04530 at 944.909 kb on - strand, within DZA65_RS04530 at 944.917 kb on + strand, within DZA65_RS04530 at 944.918 kb on - strand, within DZA65_RS04530 at 944.918 kb on - strand, within DZA65_RS04530 at 945.036 kb on + strand at 945.037 kb on - strand at 945.037 kb on - strand at 945.118 kb on + strand at 945.118 kb on + strand at 945.121 kb on - strand, within DZA65_RS04535 at 945.172 kb on + strand, within DZA65_RS04535 at 945.173 kb on - strand, within DZA65_RS04535 at 945.173 kb on - strand, within DZA65_RS04535 at 945.270 kb on + strand, within DZA65_RS04535 at 945.270 kb on + strand, within DZA65_RS04535 at 945.270 kb on + strand, within DZA65_RS04535 at 945.270 kb on + strand, within DZA65_RS04535 at 945.270 kb on + strand, within DZA65_RS04535 at 945.270 kb on + strand, within DZA65_RS04535 at 945.271 kb on - strand, within DZA65_RS04535 at 945.271 kb on - strand, within DZA65_RS04535 at 945.271 kb on - strand, within DZA65_RS04535 at 945.271 kb on - strand, within DZA65_RS04535 at 945.271 kb on - strand, within DZA65_RS04535 at 945.271 kb on - strand, within DZA65_RS04535 at 945.271 kb on - strand, within DZA65_RS04535 at 945.303 kb on + strand, within DZA65_RS04535 at 945.304 kb on - strand, within DZA65_RS04535 at 945.304 kb on - strand, within DZA65_RS04535 at 945.386 kb on + strand at 945.386 kb on + strand, within DZA65_RS04535 at 945.386 kb on + strand, within DZA65_RS04535 at 945.387 kb on - strand, within DZA65_RS04535 at 945.390 kb on + strand, within DZA65_RS04535 at 945.390 kb on + strand, within DZA65_RS04535 at 945.391 kb on - strand, within DZA65_RS04535 at 945.492 kb on + strand, within DZA65_RS04535 at 945.493 kb on - strand, within DZA65_RS04535 at 945.493 kb on - strand, within DZA65_RS04535 at 945.554 kb on + strand at 945.554 kb on + strand, within DZA65_RS04535 at 945.555 kb on - strand, within DZA65_RS04535 at 945.555 kb on - strand, within DZA65_RS04535 at 945.595 kb on + strand, within DZA65_RS04535 at 945.595 kb on + strand, within DZA65_RS04535 at 945.596 kb on - strand, within DZA65_RS04535 at 945.600 kb on + strand, within DZA65_RS04535 at 945.600 kb on + strand, within DZA65_RS04535 at 945.600 kb on + strand, within DZA65_RS04535 at 945.601 kb on - strand, within DZA65_RS04535 at 945.601 kb on - strand, within DZA65_RS04535 at 945.601 kb on - strand, within DZA65_RS04535 at 945.601 kb on - strand, within DZA65_RS04535 at 945.602 kb on + strand, within DZA65_RS04535 at 945.602 kb on + strand, within DZA65_RS04535 at 945.602 kb on + strand, within DZA65_RS04535 at 945.602 kb on + strand, within DZA65_RS04535 at 945.602 kb on + strand, within DZA65_RS04535 at 945.603 kb on - strand, within DZA65_RS04535 at 945.603 kb on - strand, within DZA65_RS04535 at 945.603 kb on - strand, within DZA65_RS04535 at 945.603 kb on - strand, within DZA65_RS04535 at 945.603 kb on - strand, within DZA65_RS04535 at 945.652 kb on + strand, within DZA65_RS04535 at 945.652 kb on + strand, within DZA65_RS04535 at 945.652 kb on + strand, within DZA65_RS04535 at 945.652 kb on + strand, within DZA65_RS04535 at 945.653 kb on - strand, within DZA65_RS04535 at 945.653 kb on - strand, within DZA65_RS04535 at 945.653 kb on - strand, within DZA65_RS04535 at 945.653 kb on - strand, within DZA65_RS04535 at 945.653 kb on - strand, within DZA65_RS04535 at 945.653 kb on - strand, within DZA65_RS04535 at 945.653 kb on - strand, within DZA65_RS04535 at 945.653 kb on - strand, within DZA65_RS04535 at 945.813 kb on + strand at 945.813 kb on + strand at 945.850 kb on + strand at 945.857 kb on - strand at 945.857 kb on - strand at 945.868 kb on + strand at 945.868 kb on + strand at 945.868 kb on + strand at 945.869 kb on - strand at 945.871 kb on + strand at 945.871 kb on + strand at 945.871 kb on + strand at 945.871 kb on + strand at 945.871 kb on + strand at 945.871 kb on + strand at 945.871 kb on + strand at 945.872 kb on - strand at 945.872 kb on - strand at 945.872 kb on - strand at 945.872 kb on - strand at 945.872 kb on - strand at 945.872 kb on - strand at 945.895 kb on + strand at 945.896 kb on - strand at 945.896 kb on - strand at 945.896 kb on - strand at 945.896 kb on - strand at 945.898 kb on + strand at 945.898 kb on + strand at 945.898 kb on + strand at 945.899 kb on - strand at 945.918 kb on - strand at 945.918 kb on - strand at 945.918 kb on - strand at 945.944 kb on + strand at 945.944 kb on + strand at 945.945 kb on - strand at 945.945 kb on - strand at 945.945 kb on - strand at 945.945 kb on - strand at 945.945 kb on - strand at 945.945 kb on - strand at 945.971 kb on + strand, within DZA65_RS04540 at 945.972 kb on - strand, within DZA65_RS04540 at 945.972 kb on - strand, within DZA65_RS04540 at 945.972 kb on - strand, within DZA65_RS04540 at 946.035 kb on + strand, within DZA65_RS04540 at 946.035 kb on + strand, within DZA65_RS04540 at 946.035 kb on + strand, within DZA65_RS04540 at 946.035 kb on + strand, within DZA65_RS04540 at 946.036 kb on - strand, within DZA65_RS04540 at 946.036 kb on - strand, within DZA65_RS04540 at 946.038 kb on - strand, within DZA65_RS04540
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 943,307 + DZA65_RS04525 0.38 +0.9 943,313 + DZA65_RS04525 0.38 -0.7 943,314 - DZA65_RS04525 0.38 -1.0 943,318 + DZA65_RS04525 0.39 -1.4 943,318 + DZA65_RS04525 0.39 -0.6 943,318 + DZA65_RS04525 0.39 +1.2 943,318 + DZA65_RS04525 0.39 -1.8 943,318 + DZA65_RS04525 0.39 -0.3 943,318 + DZA65_RS04525 0.39 +1.0 943,318 + DZA65_RS04525 0.39 -1.5 943,318 + DZA65_RS04525 0.39 -1.5 943,318 + DZA65_RS04525 0.39 -0.4 943,319 - DZA65_RS04525 0.39 +0.5 943,319 - DZA65_RS04525 0.39 +0.7 943,319 - +0.1 943,319 - DZA65_RS04525 0.39 -0.8 943,319 - DZA65_RS04525 0.39 +1.0 943,319 - DZA65_RS04525 0.39 -0.6 943,319 - DZA65_RS04525 0.39 +0.2 943,379 - DZA65_RS04525 0.44 +0.2 943,561 + DZA65_RS04525 0.61 -0.2 943,591 + DZA65_RS04525 0.64 +2.5 943,591 + DZA65_RS04525 0.64 +0.9 943,672 + DZA65_RS04525 0.71 -0.5 943,672 + DZA65_RS04525 0.71 -0.5 943,673 - DZA65_RS04525 0.71 +0.5 943,673 - DZA65_RS04525 0.71 -1.0 943,673 - DZA65_RS04525 0.71 -0.7 943,762 + DZA65_RS04525 0.80 -1.2 943,762 + DZA65_RS04525 0.80 -1.6 943,762 + DZA65_RS04525 0.80 +0.7 943,762 + DZA65_RS04525 0.80 +0.6 943,763 - DZA65_RS04525 0.80 -0.4 943,763 - DZA65_RS04525 0.80 +0.3 943,763 - DZA65_RS04525 0.80 -0.5 943,763 - DZA65_RS04525 0.80 +0.1 943,763 - DZA65_RS04525 0.80 +0.1 943,828 + DZA65_RS04525 0.86 +0.0 943,828 + DZA65_RS04525 0.86 +0.7 943,829 - DZA65_RS04525 0.86 +0.0 943,829 - DZA65_RS04525 0.86 -0.4 943,831 + DZA65_RS04525 0.86 -0.1 943,831 + DZA65_RS04525 0.86 +1.5 943,832 - DZA65_RS04525 0.86 +0.2 943,832 - DZA65_RS04525 0.86 -2.1 943,908 + -0.1 943,909 - +0.7 944,035 + -0.5 944,035 + +1.0 944,035 + +0.0 944,035 + -1.7 944,035 + +0.1 944,035 + +0.6 944,035 + -0.1 944,035 + +1.3 944,035 + -2.3 944,036 - +0.4 944,036 - -1.1 944,036 - -1.2 944,039 + -0.1 944,039 + -0.8 944,039 + -0.7 944,040 - +0.6 944,040 - -0.0 944,140 - -1.2 944,140 - -2.1 944,240 + DZA65_RS04530 0.14 -0.5 944,256 + DZA65_RS04530 0.16 +0.4 944,256 + DZA65_RS04530 0.16 -0.4 944,296 + DZA65_RS04530 0.20 -0.1 944,296 + DZA65_RS04530 0.20 -0.4 944,297 - DZA65_RS04530 0.20 -2.6 944,351 + DZA65_RS04530 0.26 -0.1 944,351 + DZA65_RS04530 0.26 -1.8 944,352 - DZA65_RS04530 0.26 -1.5 944,421 + DZA65_RS04530 0.33 +0.8 944,421 + DZA65_RS04530 0.33 -0.2 944,421 + DZA65_RS04530 0.33 -0.1 944,421 + -0.3 944,484 + DZA65_RS04530 0.40 +0.4 944,484 + DZA65_RS04530 0.40 -0.8 944,484 + DZA65_RS04530 0.40 +1.3 944,485 - DZA65_RS04530 0.40 -1.0 944,485 - DZA65_RS04530 0.40 +0.3 944,485 - DZA65_RS04530 0.40 +0.3 944,614 + DZA65_RS04530 0.53 -1.4 944,686 + DZA65_RS04530 0.61 -0.4 944,687 - DZA65_RS04530 0.61 -0.6 944,687 - DZA65_RS04530 0.61 -1.0 944,717 - DZA65_RS04530 0.64 -0.8 944,736 + DZA65_RS04530 0.66 -0.3 944,815 - DZA65_RS04530 0.74 +0.9 944,884 + DZA65_RS04530 0.82 -0.7 944,884 + DZA65_RS04530 0.82 -0.1 944,884 + DZA65_RS04530 0.82 +1.3 944,885 - DZA65_RS04530 0.82 -0.7 944,885 - DZA65_RS04530 0.82 -0.1 944,908 + DZA65_RS04530 0.84 -0.8 944,908 + DZA65_RS04530 0.84 +0.0 944,908 + DZA65_RS04530 0.84 -0.6 944,908 + DZA65_RS04530 0.84 -1.4 944,909 - DZA65_RS04530 0.84 -1.7 944,909 - DZA65_RS04530 0.84 -0.0 944,909 - DZA65_RS04530 0.84 -0.1 944,909 - DZA65_RS04530 0.84 -1.3 944,909 - DZA65_RS04530 0.84 +0.6 944,909 - DZA65_RS04530 0.84 -0.8 944,909 - DZA65_RS04530 0.84 +0.5 944,909 - DZA65_RS04530 0.84 +0.5 944,909 - DZA65_RS04530 0.84 -0.4 944,909 - DZA65_RS04530 0.84 -1.4 944,909 - DZA65_RS04530 0.84 +0.1 944,917 + DZA65_RS04530 0.85 -0.4 944,918 - DZA65_RS04530 0.85 -0.2 944,918 - DZA65_RS04530 0.85 -1.4 945,036 + -1.2 945,037 - -1.0 945,037 - -0.3 945,118 + +0.0 945,118 + -0.8 945,121 - DZA65_RS04535 0.10 -1.4 945,172 + DZA65_RS04535 0.16 -0.7 945,173 - DZA65_RS04535 0.16 -1.2 945,173 - DZA65_RS04535 0.16 +0.9 945,270 + DZA65_RS04535 0.28 +0.0 945,270 + DZA65_RS04535 0.28 -0.7 945,270 + DZA65_RS04535 0.28 -0.9 945,270 + DZA65_RS04535 0.28 +0.6 945,270 + DZA65_RS04535 0.28 -1.1 945,270 + DZA65_RS04535 0.28 +1.3 945,271 - DZA65_RS04535 0.28 -1.0 945,271 - DZA65_RS04535 0.28 +0.1 945,271 - DZA65_RS04535 0.28 -0.4 945,271 - DZA65_RS04535 0.28 +0.3 945,271 - DZA65_RS04535 0.28 +0.1 945,271 - DZA65_RS04535 0.28 -1.1 945,271 - DZA65_RS04535 0.28 +0.3 945,303 + DZA65_RS04535 0.32 -0.4 945,304 - DZA65_RS04535 0.32 +0.3 945,304 - DZA65_RS04535 0.32 +0.0 945,386 + +1.9 945,386 + DZA65_RS04535 0.42 -0.7 945,386 + DZA65_RS04535 0.42 +0.6 945,387 - DZA65_RS04535 0.42 -0.3 945,390 + DZA65_RS04535 0.42 +0.5 945,390 + DZA65_RS04535 0.42 -0.7 945,391 - DZA65_RS04535 0.42 -0.4 945,492 + DZA65_RS04535 0.54 -2.9 945,493 - DZA65_RS04535 0.54 -0.3 945,493 - DZA65_RS04535 0.54 -0.6 945,554 + -1.0 945,554 + DZA65_RS04535 0.62 -0.6 945,555 - DZA65_RS04535 0.62 -0.9 945,555 - DZA65_RS04535 0.62 +0.3 945,595 + DZA65_RS04535 0.66 -2.1 945,595 + DZA65_RS04535 0.66 -0.5 945,596 - DZA65_RS04535 0.67 -0.3 945,600 + DZA65_RS04535 0.67 -0.2 945,600 + DZA65_RS04535 0.67 +0.6 945,600 + DZA65_RS04535 0.67 +3.9 945,601 - DZA65_RS04535 0.67 +0.6 945,601 - DZA65_RS04535 0.67 -0.5 945,601 - DZA65_RS04535 0.67 -0.8 945,601 - DZA65_RS04535 0.67 -0.6 945,602 + DZA65_RS04535 0.67 -2.1 945,602 + DZA65_RS04535 0.67 -0.3 945,602 + DZA65_RS04535 0.67 -0.3 945,602 + DZA65_RS04535 0.67 -2.1 945,602 + DZA65_RS04535 0.67 -1.1 945,603 - DZA65_RS04535 0.67 -1.0 945,603 - DZA65_RS04535 0.67 +0.7 945,603 - DZA65_RS04535 0.67 -0.6 945,603 - DZA65_RS04535 0.67 -0.4 945,603 - DZA65_RS04535 0.67 +0.0 945,652 + DZA65_RS04535 0.73 -0.4 945,652 + DZA65_RS04535 0.73 -1.2 945,652 + DZA65_RS04535 0.73 +0.3 945,652 + DZA65_RS04535 0.73 -1.8 945,653 - DZA65_RS04535 0.73 -0.6 945,653 - DZA65_RS04535 0.73 -1.5 945,653 - DZA65_RS04535 0.73 -0.8 945,653 - DZA65_RS04535 0.73 -1.3 945,653 - DZA65_RS04535 0.73 -0.8 945,653 - DZA65_RS04535 0.73 -1.1 945,653 - DZA65_RS04535 0.73 -1.1 945,653 - DZA65_RS04535 0.73 -0.3 945,813 + +0.1 945,813 + +1.3 945,850 + -0.8 945,857 - +0.1 945,857 - -0.3 945,868 + -0.2 945,868 + -0.7 945,868 + -0.6 945,869 - -2.3 945,871 + -0.7 945,871 + -1.0 945,871 + -2.1 945,871 + -1.5 945,871 + -0.4 945,871 + -1.7 945,871 + -0.3 945,872 - -0.7 945,872 - -0.1 945,872 - -0.7 945,872 - -1.2 945,872 - -1.1 945,872 - +2.1 945,895 + -0.3 945,896 - -0.7 945,896 - -0.7 945,896 - -0.5 945,896 - +0.7 945,898 + +0.2 945,898 + -1.0 945,898 + -0.3 945,899 - -0.8 945,918 - -0.6 945,918 - -0.3 945,918 - +0.5 945,944 + +0.3 945,944 + -0.3 945,945 - +0.4 945,945 - -0.3 945,945 - -1.6 945,945 - -0.6 945,945 - -2.2 945,945 - -1.3 945,971 + DZA65_RS04540 0.10 -0.5 945,972 - DZA65_RS04540 0.10 +0.2 945,972 - DZA65_RS04540 0.10 +0.2 945,972 - DZA65_RS04540 0.10 +0.3 946,035 + DZA65_RS04540 0.17 -1.0 946,035 + DZA65_RS04540 0.17 -0.2 946,035 + DZA65_RS04540 0.17 +0.1 946,035 + DZA65_RS04540 0.17 +1.6 946,036 - DZA65_RS04540 0.17 +1.9 946,036 - DZA65_RS04540 0.17 +2.1 946,038 - DZA65_RS04540 0.18 +0.2
Or see this region's nucleotide sequence