Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS04410 and DZA65_RS04415 are separated by 162 nucleotides DZA65_RS04415 and DZA65_RS04420 are separated by 45 nucleotides
DZA65_RS04410: DZA65_RS04410 - anaerobic nitric oxide reductase flavorubredoxin, at 919,379 to 920,878
_RS04410
DZA65_RS04415: DZA65_RS04415 - nitric oxide reductase transcriptional regulator NorR, at 921,041 to 922,567
_RS04415
DZA65_RS04420: DZA65_RS04420 - fumarate hydratase, at 922,613 to 924,256
_RS04420
Position (kb) 921
922
923 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 920.106 kb on + strand, within DZA65_RS04410 at 920.107 kb on - strand, within DZA65_RS04410 at 920.107 kb on - strand, within DZA65_RS04410 at 920.133 kb on + strand, within DZA65_RS04410 at 920.133 kb on + strand, within DZA65_RS04410 at 920.133 kb on + strand, within DZA65_RS04410 at 920.133 kb on + strand, within DZA65_RS04410 at 920.133 kb on + strand, within DZA65_RS04410 at 920.133 kb on + strand, within DZA65_RS04410 at 920.134 kb on - strand, within DZA65_RS04410 at 920.134 kb on - strand, within DZA65_RS04410 at 920.155 kb on - strand, within DZA65_RS04410 at 920.155 kb on - strand, within DZA65_RS04410 at 920.155 kb on - strand, within DZA65_RS04410 at 920.155 kb on - strand, within DZA65_RS04410 at 920.155 kb on - strand, within DZA65_RS04410 at 920.155 kb on - strand, within DZA65_RS04410 at 920.164 kb on + strand, within DZA65_RS04410 at 920.165 kb on - strand, within DZA65_RS04410 at 920.165 kb on - strand, within DZA65_RS04410 at 920.165 kb on - strand, within DZA65_RS04410 at 920.165 kb on - strand, within DZA65_RS04410 at 920.165 kb on - strand, within DZA65_RS04410 at 920.231 kb on - strand, within DZA65_RS04410 at 920.287 kb on + strand, within DZA65_RS04410 at 920.288 kb on - strand, within DZA65_RS04410 at 920.288 kb on - strand, within DZA65_RS04410 at 920.299 kb on - strand, within DZA65_RS04410 at 920.299 kb on - strand, within DZA65_RS04410 at 920.364 kb on + strand, within DZA65_RS04410 at 920.364 kb on + strand, within DZA65_RS04410 at 920.365 kb on - strand, within DZA65_RS04410 at 920.365 kb on - strand, within DZA65_RS04410 at 920.365 kb on - strand, within DZA65_RS04410 at 920.413 kb on + strand, within DZA65_RS04410 at 920.413 kb on + strand, within DZA65_RS04410 at 920.413 kb on + strand, within DZA65_RS04410 at 920.413 kb on + strand, within DZA65_RS04410 at 920.413 kb on + strand, within DZA65_RS04410 at 920.413 kb on + strand, within DZA65_RS04410 at 920.414 kb on - strand, within DZA65_RS04410 at 920.414 kb on - strand, within DZA65_RS04410 at 920.414 kb on - strand, within DZA65_RS04410 at 920.414 kb on - strand, within DZA65_RS04410 at 920.414 kb on - strand, within DZA65_RS04410 at 920.414 kb on - strand, within DZA65_RS04410 at 920.415 kb on + strand, within DZA65_RS04410 at 920.415 kb on + strand, within DZA65_RS04410 at 920.415 kb on + strand, within DZA65_RS04410 at 920.415 kb on + strand, within DZA65_RS04410 at 920.415 kb on + strand, within DZA65_RS04410 at 920.415 kb on + strand, within DZA65_RS04410 at 920.415 kb on + strand, within DZA65_RS04410 at 920.415 kb on + strand, within DZA65_RS04410 at 920.415 kb on + strand, within DZA65_RS04410 at 920.415 kb on + strand, within DZA65_RS04410 at 920.415 kb on + strand, within DZA65_RS04410 at 920.415 kb on + strand, within DZA65_RS04410 at 920.415 kb on + strand, within DZA65_RS04410 at 920.415 kb on + strand, within DZA65_RS04410 at 920.415 kb on + strand, within DZA65_RS04410 at 920.415 kb on + strand, within DZA65_RS04410 at 920.415 kb on + strand, within DZA65_RS04410 at 920.415 kb on + strand, within DZA65_RS04410 at 920.415 kb on + strand, within DZA65_RS04410 at 920.415 kb on + strand, within DZA65_RS04410 at 920.415 kb on + strand, within DZA65_RS04410 at 920.416 kb on - strand, within DZA65_RS04410 at 920.416 kb on - strand, within DZA65_RS04410 at 920.416 kb on - strand, within DZA65_RS04410 at 920.416 kb on - strand, within DZA65_RS04410 at 920.416 kb on - strand, within DZA65_RS04410 at 920.416 kb on - strand, within DZA65_RS04410 at 920.416 kb on - strand, within DZA65_RS04410 at 920.416 kb on - strand, within DZA65_RS04410 at 920.416 kb on - strand, within DZA65_RS04410 at 920.416 kb on - strand, within DZA65_RS04410 at 920.416 kb on - strand, within DZA65_RS04410 at 920.416 kb on - strand, within DZA65_RS04410 at 920.416 kb on - strand, within DZA65_RS04410 at 920.416 kb on - strand, within DZA65_RS04410 at 920.416 kb on - strand, within DZA65_RS04410 at 920.416 kb on - strand, within DZA65_RS04410 at 920.416 kb on - strand, within DZA65_RS04410 at 920.416 kb on - strand, within DZA65_RS04410 at 920.416 kb on - strand, within DZA65_RS04410 at 920.416 kb on - strand, within DZA65_RS04410 at 920.416 kb on - strand, within DZA65_RS04410 at 920.416 kb on - strand, within DZA65_RS04410 at 920.416 kb on - strand, within DZA65_RS04410 at 920.416 kb on - strand, within DZA65_RS04410 at 920.416 kb on - strand, within DZA65_RS04410 at 920.416 kb on - strand, within DZA65_RS04410 at 920.577 kb on + strand, within DZA65_RS04410 at 920.577 kb on + strand, within DZA65_RS04410 at 920.658 kb on + strand, within DZA65_RS04410 at 920.658 kb on + strand, within DZA65_RS04410 at 920.658 kb on + strand, within DZA65_RS04410 at 920.659 kb on - strand, within DZA65_RS04410 at 920.699 kb on + strand, within DZA65_RS04410 at 920.699 kb on + strand, within DZA65_RS04410 at 920.700 kb on - strand, within DZA65_RS04410 at 920.767 kb on - strand at 920.767 kb on - strand at 920.773 kb on + strand at 920.773 kb on + strand at 920.773 kb on + strand at 920.773 kb on + strand at 920.773 kb on + strand at 920.773 kb on + strand at 920.773 kb on + strand at 920.774 kb on - strand at 920.774 kb on - strand at 920.774 kb on - strand at 920.775 kb on + strand at 920.775 kb on + strand at 920.775 kb on + strand at 920.775 kb on + strand at 920.775 kb on + strand at 920.775 kb on + strand at 920.776 kb on - strand at 920.776 kb on - strand at 920.776 kb on - strand at 920.776 kb on - strand at 920.776 kb on - strand at 920.776 kb on - strand at 920.776 kb on - strand at 920.776 kb on - strand at 920.776 kb on - strand at 920.776 kb on - strand at 920.776 kb on - strand at 920.776 kb on - strand at 920.799 kb on + strand at 920.800 kb on - strand at 920.854 kb on + strand at 920.855 kb on - strand at 920.864 kb on - strand at 920.864 kb on - strand at 920.872 kb on + strand at 920.872 kb on + strand at 920.873 kb on - strand at 920.881 kb on + strand at 920.882 kb on - strand at 920.898 kb on + strand at 920.902 kb on - strand at 920.911 kb on + strand at 920.911 kb on + strand at 920.911 kb on + strand at 920.911 kb on + strand at 920.911 kb on + strand at 920.911 kb on + strand at 920.911 kb on + strand at 920.911 kb on + strand at 920.911 kb on + strand at 920.912 kb on - strand at 920.912 kb on - strand at 920.912 kb on - strand at 920.912 kb on - strand at 920.912 kb on - strand at 920.912 kb on - strand at 921.020 kb on + strand at 921.021 kb on - strand at 921.021 kb on - strand at 921.021 kb on - strand at 921.021 kb on - strand at 921.054 kb on + strand at 921.054 kb on + strand at 921.054 kb on + strand at 921.055 kb on - strand at 921.055 kb on - strand at 921.055 kb on - strand at 921.055 kb on - strand at 921.147 kb on + strand at 921.147 kb on + strand at 921.147 kb on + strand at 921.147 kb on + strand at 921.147 kb on + strand at 921.147 kb on + strand at 921.148 kb on - strand at 921.148 kb on - strand at 921.177 kb on - strand at 921.332 kb on + strand, within DZA65_RS04415 at 921.333 kb on - strand, within DZA65_RS04415 at 921.333 kb on - strand, within DZA65_RS04415 at 921.670 kb on + strand, within DZA65_RS04415 at 921.670 kb on + strand, within DZA65_RS04415 at 921.670 kb on + strand, within DZA65_RS04415 at 921.670 kb on + strand, within DZA65_RS04415 at 921.670 kb on + strand, within DZA65_RS04415 at 921.764 kb on + strand, within DZA65_RS04415 at 921.764 kb on + strand, within DZA65_RS04415 at 921.844 kb on + strand, within DZA65_RS04415 at 921.886 kb on + strand, within DZA65_RS04415 at 921.886 kb on + strand, within DZA65_RS04415 at 921.887 kb on - strand, within DZA65_RS04415 at 921.988 kb on + strand, within DZA65_RS04415 at 922.035 kb on + strand, within DZA65_RS04415 at 922.035 kb on + strand, within DZA65_RS04415 at 922.035 kb on + strand, within DZA65_RS04415 at 922.035 kb on + strand, within DZA65_RS04415 at 922.036 kb on - strand, within DZA65_RS04415 at 922.036 kb on - strand, within DZA65_RS04415 at 922.036 kb on - strand, within DZA65_RS04415 at 922.036 kb on - strand, within DZA65_RS04415 at 922.188 kb on + strand, within DZA65_RS04415 at 922.189 kb on - strand, within DZA65_RS04415 at 922.442 kb on + strand at 922.442 kb on + strand at 922.442 kb on + strand at 922.555 kb on - strand at 922.555 kb on - strand at 922.560 kb on + strand at 922.560 kb on + strand at 922.831 kb on + strand, within DZA65_RS04420 at 922.917 kb on + strand, within DZA65_RS04420 at 922.917 kb on + strand, within DZA65_RS04420 at 922.918 kb on - strand, within DZA65_RS04420 at 922.918 kb on - strand, within DZA65_RS04420 at 922.918 kb on - strand, within DZA65_RS04420 at 922.966 kb on - strand, within DZA65_RS04420 at 922.995 kb on + strand, within DZA65_RS04420 at 922.995 kb on + strand at 922.995 kb on + strand, within DZA65_RS04420 at 922.995 kb on + strand, within DZA65_RS04420 at 922.999 kb on - strand, within DZA65_RS04420 at 923.019 kb on + strand, within DZA65_RS04420 at 923.223 kb on + strand, within DZA65_RS04420 at 923.223 kb on + strand, within DZA65_RS04420 at 923.223 kb on + strand, within DZA65_RS04420 at 923.223 kb on + strand, within DZA65_RS04420 at 923.224 kb on - strand at 923.224 kb on - strand at 923.224 kb on - strand, within DZA65_RS04420 at 923.224 kb on - strand, within DZA65_RS04420 at 923.224 kb on - strand, within DZA65_RS04420 at 923.224 kb on - strand, within DZA65_RS04420 at 923.379 kb on + strand, within DZA65_RS04420 at 923.380 kb on - strand, within DZA65_RS04420 at 923.500 kb on - strand, within DZA65_RS04420 at 923.502 kb on + strand, within DZA65_RS04420 at 923.503 kb on - strand, within DZA65_RS04420
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 920,106 + DZA65_RS04410 0.48 +0.5 920,107 - DZA65_RS04410 0.49 +0.0 920,107 - DZA65_RS04410 0.49 -0.1 920,133 + DZA65_RS04410 0.50 -0.3 920,133 + DZA65_RS04410 0.50 +0.8 920,133 + DZA65_RS04410 0.50 -0.3 920,133 + DZA65_RS04410 0.50 -0.7 920,133 + DZA65_RS04410 0.50 -0.6 920,133 + DZA65_RS04410 0.50 +0.3 920,134 - DZA65_RS04410 0.50 +0.3 920,134 - DZA65_RS04410 0.50 +0.7 920,155 - DZA65_RS04410 0.52 -0.3 920,155 - DZA65_RS04410 0.52 -0.7 920,155 - DZA65_RS04410 0.52 -0.7 920,155 - DZA65_RS04410 0.52 +0.2 920,155 - DZA65_RS04410 0.52 +0.2 920,155 - DZA65_RS04410 0.52 -0.3 920,164 + DZA65_RS04410 0.52 -0.1 920,165 - DZA65_RS04410 0.52 +0.5 920,165 - DZA65_RS04410 0.52 -1.1 920,165 - DZA65_RS04410 0.52 +0.3 920,165 - DZA65_RS04410 0.52 +0.5 920,165 - DZA65_RS04410 0.52 +0.9 920,231 - DZA65_RS04410 0.57 +0.5 920,287 + DZA65_RS04410 0.61 -2.3 920,288 - DZA65_RS04410 0.61 -1.4 920,288 - DZA65_RS04410 0.61 +0.6 920,299 - DZA65_RS04410 0.61 +0.0 920,299 - DZA65_RS04410 0.61 +0.1 920,364 + DZA65_RS04410 0.66 -0.4 920,364 + DZA65_RS04410 0.66 -1.7 920,365 - DZA65_RS04410 0.66 +0.3 920,365 - DZA65_RS04410 0.66 +0.3 920,365 - DZA65_RS04410 0.66 -0.8 920,413 + DZA65_RS04410 0.69 -1.3 920,413 + DZA65_RS04410 0.69 -0.1 920,413 + DZA65_RS04410 0.69 -0.9 920,413 + DZA65_RS04410 0.69 -1.1 920,413 + DZA65_RS04410 0.69 +0.9 920,413 + DZA65_RS04410 0.69 +0.6 920,414 - DZA65_RS04410 0.69 +0.5 920,414 - DZA65_RS04410 0.69 +0.4 920,414 - DZA65_RS04410 0.69 -1.1 920,414 - DZA65_RS04410 0.69 -1.0 920,414 - DZA65_RS04410 0.69 +1.2 920,414 - DZA65_RS04410 0.69 -1.5 920,415 + DZA65_RS04410 0.69 +0.1 920,415 + DZA65_RS04410 0.69 -1.0 920,415 + DZA65_RS04410 0.69 -0.3 920,415 + DZA65_RS04410 0.69 -0.0 920,415 + DZA65_RS04410 0.69 -0.3 920,415 + DZA65_RS04410 0.69 +0.1 920,415 + DZA65_RS04410 0.69 -1.0 920,415 + DZA65_RS04410 0.69 -0.1 920,415 + DZA65_RS04410 0.69 +1.0 920,415 + DZA65_RS04410 0.69 -1.0 920,415 + DZA65_RS04410 0.69 +1.6 920,415 + DZA65_RS04410 0.69 -0.9 920,415 + DZA65_RS04410 0.69 -0.4 920,415 + DZA65_RS04410 0.69 -0.7 920,415 + DZA65_RS04410 0.69 +0.1 920,415 + DZA65_RS04410 0.69 -0.2 920,415 + DZA65_RS04410 0.69 +0.3 920,415 + DZA65_RS04410 0.69 +1.3 920,415 + DZA65_RS04410 0.69 +0.1 920,415 + DZA65_RS04410 0.69 -1.3 920,415 + DZA65_RS04410 0.69 +0.2 920,416 - DZA65_RS04410 0.69 +1.0 920,416 - DZA65_RS04410 0.69 -0.0 920,416 - DZA65_RS04410 0.69 -0.3 920,416 - DZA65_RS04410 0.69 +2.3 920,416 - DZA65_RS04410 0.69 -1.1 920,416 - DZA65_RS04410 0.69 -0.3 920,416 - DZA65_RS04410 0.69 -0.7 920,416 - DZA65_RS04410 0.69 -0.1 920,416 - DZA65_RS04410 0.69 -0.0 920,416 - DZA65_RS04410 0.69 -2.4 920,416 - DZA65_RS04410 0.69 -0.9 920,416 - DZA65_RS04410 0.69 +1.3 920,416 - DZA65_RS04410 0.69 -1.3 920,416 - DZA65_RS04410 0.69 -0.9 920,416 - DZA65_RS04410 0.69 +0.6 920,416 - DZA65_RS04410 0.69 +0.4 920,416 - DZA65_RS04410 0.69 +0.9 920,416 - DZA65_RS04410 0.69 +0.8 920,416 - DZA65_RS04410 0.69 -3.1 920,416 - DZA65_RS04410 0.69 -1.5 920,416 - DZA65_RS04410 0.69 -0.7 920,416 - DZA65_RS04410 0.69 +0.4 920,416 - DZA65_RS04410 0.69 +0.3 920,416 - DZA65_RS04410 0.69 -1.8 920,416 - DZA65_RS04410 0.69 -0.7 920,416 - DZA65_RS04410 0.69 -0.3 920,577 + DZA65_RS04410 0.80 +0.5 920,577 + DZA65_RS04410 0.80 -0.3 920,658 + DZA65_RS04410 0.85 -0.8 920,658 + DZA65_RS04410 0.85 +0.3 920,658 + DZA65_RS04410 0.85 +0.2 920,659 - DZA65_RS04410 0.85 -1.0 920,699 + DZA65_RS04410 0.88 +0.2 920,699 + DZA65_RS04410 0.88 -0.3 920,700 - DZA65_RS04410 0.88 +0.7 920,767 - +0.1 920,767 - -2.0 920,773 + -0.8 920,773 + +0.9 920,773 + +0.1 920,773 + +0.2 920,773 + +1.1 920,773 + +0.2 920,773 + -0.6 920,774 - -0.0 920,774 - +0.1 920,774 - -0.3 920,775 + -0.4 920,775 + +0.7 920,775 + +0.3 920,775 + -1.5 920,775 + +0.2 920,775 + -0.8 920,776 - +0.7 920,776 - -0.7 920,776 - -0.4 920,776 - +0.3 920,776 - -1.0 920,776 - -1.3 920,776 - -0.5 920,776 - -0.3 920,776 - -0.2 920,776 - +0.5 920,776 - -0.7 920,776 - +0.3 920,799 + +0.0 920,800 - -0.3 920,854 + -0.2 920,855 - +0.5 920,864 - -0.5 920,864 - -0.9 920,872 + -0.7 920,872 + -0.3 920,873 - -0.3 920,881 + -0.1 920,882 - -0.4 920,898 + -0.2 920,902 - -0.7 920,911 + +0.1 920,911 + -0.4 920,911 + -0.5 920,911 + +1.7 920,911 + +0.9 920,911 + +1.2 920,911 + -0.6 920,911 + +0.0 920,911 + -1.7 920,912 - -1.7 920,912 - +0.6 920,912 - +0.4 920,912 - -1.2 920,912 - -0.8 920,912 - +0.4 921,020 + -0.3 921,021 - -0.1 921,021 - +0.7 921,021 - -0.6 921,021 - -0.0 921,054 + +0.2 921,054 + -2.0 921,054 + +0.6 921,055 - -0.9 921,055 - +1.0 921,055 - -0.3 921,055 - +0.5 921,147 + -0.4 921,147 + +0.2 921,147 + +0.1 921,147 + +2.2 921,147 + -0.3 921,147 + -0.7 921,148 - -0.7 921,148 - +1.3 921,177 - +0.3 921,332 + DZA65_RS04415 0.19 -0.0 921,333 - DZA65_RS04415 0.19 +1.8 921,333 - DZA65_RS04415 0.19 +0.4 921,670 + DZA65_RS04415 0.41 -0.3 921,670 + DZA65_RS04415 0.41 +0.7 921,670 + DZA65_RS04415 0.41 -0.2 921,670 + DZA65_RS04415 0.41 -0.8 921,670 + DZA65_RS04415 0.41 -0.5 921,764 + DZA65_RS04415 0.47 +0.9 921,764 + DZA65_RS04415 0.47 +1.3 921,844 + DZA65_RS04415 0.53 -0.7 921,886 + DZA65_RS04415 0.55 +0.3 921,886 + DZA65_RS04415 0.55 -0.1 921,887 - DZA65_RS04415 0.55 -0.7 921,988 + DZA65_RS04415 0.62 +1.0 922,035 + DZA65_RS04415 0.65 -1.7 922,035 + DZA65_RS04415 0.65 +0.0 922,035 + DZA65_RS04415 0.65 +1.3 922,035 + DZA65_RS04415 0.65 -0.7 922,036 - DZA65_RS04415 0.65 -0.5 922,036 - DZA65_RS04415 0.65 +0.9 922,036 - DZA65_RS04415 0.65 -1.7 922,036 - DZA65_RS04415 0.65 -1.0 922,188 + DZA65_RS04415 0.75 -1.7 922,189 - DZA65_RS04415 0.75 -0.5 922,442 + -0.3 922,442 + -1.4 922,442 + -0.0 922,555 - -0.3 922,555 - -0.7 922,560 + -0.3 922,560 + +1.2 922,831 + DZA65_RS04420 0.13 -1.0 922,917 + DZA65_RS04420 0.18 +0.1 922,917 + DZA65_RS04420 0.18 -1.5 922,918 - DZA65_RS04420 0.19 -0.4 922,918 - DZA65_RS04420 0.19 +0.4 922,918 - DZA65_RS04420 0.19 +0.9 922,966 - DZA65_RS04420 0.21 +0.3 922,995 + DZA65_RS04420 0.23 -1.0 922,995 + -1.0 922,995 + DZA65_RS04420 0.23 -1.4 922,995 + DZA65_RS04420 0.23 +0.1 922,999 - DZA65_RS04420 0.23 +0.5 923,019 + DZA65_RS04420 0.25 -0.1 923,223 + DZA65_RS04420 0.37 +0.7 923,223 + DZA65_RS04420 0.37 -0.9 923,223 + DZA65_RS04420 0.37 -2.7 923,223 + DZA65_RS04420 0.37 +0.3 923,224 - +0.0 923,224 - +1.9 923,224 - DZA65_RS04420 0.37 +0.3 923,224 - DZA65_RS04420 0.37 +0.3 923,224 - DZA65_RS04420 0.37 -1.0 923,224 - DZA65_RS04420 0.37 -0.3 923,379 + DZA65_RS04420 0.47 -0.1 923,380 - DZA65_RS04420 0.47 -0.7 923,500 - DZA65_RS04420 0.54 -0.1 923,502 + DZA65_RS04420 0.54 -0.9 923,503 - DZA65_RS04420 0.54 -1.3
Or see this region's nucleotide sequence